Wall clock time and date at job start Tue Mar 31 2020 18:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46902 * 111.00157 * 2 1 4 4 C 1.46898 * 110.99808 * 123.94576 * 2 1 3 5 5 C 1.50707 * 109.46933 * 66.04821 * 4 2 1 6 6 C 1.40360 * 126.64665 * 260.02090 * 5 4 2 7 7 C 1.35130 * 107.11653 * 180.02562 * 6 5 4 8 8 O 1.33929 * 108.76467 * 0.02562 * 7 6 5 9 9 C 1.34910 * 109.38631 * 359.73049 * 8 7 6 10 10 C 1.46658 * 125.98865 * 180.30758 * 9 8 7 11 11 O 1.21698 * 119.99701 * 172.85979 * 10 9 8 12 12 N 1.34770 * 120.00016 * 352.85923 * 10 9 8 13 13 C 1.46928 * 120.63311 * 3.63641 * 12 10 9 14 14 C 1.52756 * 109.01198 * 233.58608 * 13 12 10 15 15 C 1.53039 * 109.38308 * 305.58592 * 14 13 12 16 16 C 1.53004 * 109.45129 * 181.25066 * 15 14 13 17 17 N 1.46500 * 109.46564 * 64.94023 * 16 15 14 18 18 C 1.36940 * 119.99774 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00009 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99911 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99972 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00286 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47028 * 89.99569 * 22 20 18 24 24 H 1.48494 * 109.47371 * 209.99966 * 22 20 18 25 25 H 1.48504 * 109.46808 * 329.99803 * 22 20 18 26 26 C 1.53042 * 109.53975 * 61.23861 * 15 14 13 27 27 C 1.46927 * 120.63188 * 183.91710 * 12 10 9 28 28 H 1.09001 * 109.47058 * 60.00192 * 1 2 3 29 29 H 1.08999 * 109.47548 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47595 * 300.00756 * 1 2 3 31 31 H 1.08996 * 109.47367 * 63.94792 * 3 2 1 32 32 H 1.08996 * 109.47110 * 183.95652 * 3 2 1 33 33 H 1.09000 * 109.46759 * 303.94579 * 3 2 1 34 34 H 1.08999 * 109.47259 * 186.04434 * 4 2 1 35 35 H 1.09004 * 109.47685 * 306.04899 * 4 2 1 36 36 H 1.08009 * 126.44204 * 0.02740 * 6 5 4 37 37 H 1.08003 * 125.61618 * 180.02562 * 7 6 5 38 38 H 1.08999 * 109.58089 * 353.42207 * 13 12 10 39 39 H 1.09007 * 109.58700 * 113.84095 * 13 12 10 40 40 H 1.09000 * 109.56739 * 185.55158 * 14 13 12 41 41 H 1.08997 * 109.35947 * 65.49490 * 14 13 12 42 42 H 1.08996 * 109.46368 * 301.22063 * 15 14 13 43 43 H 1.08998 * 109.46715 * 184.93786 * 16 15 14 44 44 H 1.08991 * 109.47002 * 304.94122 * 16 15 14 45 45 H 0.97001 * 120.00190 * 0.02562 * 17 16 15 46 46 H 0.96996 * 120.00089 * 180.02562 * 21 20 18 47 47 H 1.08994 * 109.50353 * 178.68407 * 26 15 14 48 48 H 1.09007 * 109.49657 * 58.58494 * 26 15 14 49 49 H 1.09000 * 109.58870 * 246.15737 * 27 12 10 50 50 H 1.09003 * 109.58739 * 6.43974 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7658 1.1377 5 6 1.6368 -2.2203 0.9731 6 6 0.5818 -2.8995 1.6022 7 6 0.6224 -4.1807 1.1744 8 8 1.6448 -4.3175 0.3202 9 6 2.2726 -3.1317 0.1797 10 6 3.4358 -2.8683 -0.6738 11 8 3.8378 -1.7289 -0.8199 12 7 4.0596 -3.8879 -1.2963 13 6 3.5393 -5.2582 -1.1940 14 6 4.6571 -6.1800 -0.7100 15 6 5.8699 -6.0352 -1.6320 16 6 6.9792 -6.9808 -1.1670 17 7 6.5353 -8.3682 -1.3231 18 6 7.3671 -9.3970 -0.9697 19 1 8.3501 -9.1857 -0.5755 20 6 6.9463 -10.7116 -1.1171 21 7 7.7455 -11.7005 -0.7769 22 14 5.2458 -11.0772 -1.7983 23 1 5.3199 -11.1964 -3.2767 24 1 4.7457 -12.3517 -1.2233 25 1 4.3199 -9.9740 -1.4364 26 6 6.3779 -4.5922 -1.5867 27 6 5.2764 -3.6514 -2.0852 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7043 1.8724 0.9232 32 1 3.0827 1.3432 -0.0709 33 1 1.5899 1.9162 -0.8525 34 1 3.0796 -0.6610 1.1757 35 1 1.5610 -0.3870 2.0629 36 1 -0.1290 -2.4775 2.2974 37 1 -0.0576 -4.9651 1.4724 38 1 2.7134 -5.2832 -0.4832 39 1 3.1925 -5.5913 -2.1722 40 1 4.3102 -7.2133 -0.7248 41 1 4.9379 -5.9046 0.3065 42 1 5.5823 -6.2869 -2.6527 43 1 7.8732 -6.8155 -1.7683 44 1 7.2056 -6.7875 -0.1185 45 1 5.6526 -8.5580 -1.6776 46 1 7.4517 -12.6190 -0.8802 47 1 7.2557 -4.4952 -2.2254 48 1 6.6425 -4.3317 -0.5618 49 1 5.0741 -3.8509 -3.1375 50 1 5.5948 -2.6160 -1.9642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206057539.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:48 Heat of formation + Delta-G solvation = -7.929469 kcal Electronic energy + Delta-G solvation = -29847.858005 eV Core-core repulsion = 25876.893518 eV Total energy + Delta-G solvation = -3970.964487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.78594 -40.97710 -39.05737 -38.33801 -36.68981 -34.65286 -34.16032 -32.91819 -32.18647 -30.99147 -28.87188 -28.43545 -27.93753 -25.54705 -24.43863 -24.07148 -23.14587 -22.77635 -22.17211 -21.12173 -20.22520 -19.61790 -18.50781 -17.59695 -17.44278 -16.90712 -16.59893 -16.20371 -16.16369 -16.05803 -15.80778 -15.52866 -15.49871 -15.30873 -14.91967 -14.47807 -14.29939 -14.22361 -14.17041 -13.82282 -13.54205 -13.34666 -13.27562 -13.10888 -12.94083 -12.78761 -12.67235 -12.59708 -12.45030 -12.18315 -12.15016 -11.87714 -11.67713 -11.45069 -11.40770 -11.07439 -10.93341 -10.80873 -9.84307 -9.46880 -9.28441 -9.22133 -8.01758 -5.35489 0.06380 1.38262 1.40754 1.43344 1.50597 1.61764 2.05299 2.18749 2.49903 3.17978 3.29392 3.47731 3.56351 3.67367 3.83180 3.85083 3.90044 4.06029 4.15486 4.25428 4.32942 4.35305 4.38095 4.49503 4.51803 4.53008 4.57911 4.68674 4.71326 4.75543 4.78595 4.84250 4.89819 4.96584 4.99845 5.02972 5.04415 5.07411 5.11672 5.17714 5.24966 5.39281 5.47959 5.61029 5.76354 5.91058 6.07918 6.15459 6.22074 6.32522 7.03232 7.09098 7.84791 8.05582 9.19970 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.002646 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.406539 B =10579.261102 C =11510.674378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.552 5.552 3 C 0.033 3.967 4 C 0.126 3.874 5 C -0.090 4.090 6 C -0.226 4.226 7 C -0.001 4.001 8 O -0.164 6.164 9 C -0.088 4.088 10 C 0.594 3.406 11 O -0.535 6.535 12 N -0.603 5.603 13 C 0.096 3.904 14 C -0.120 4.120 15 C -0.088 4.088 16 C 0.160 3.840 17 N -0.755 5.755 18 C -0.236 4.236 19 H 0.052 0.948 20 C -0.068 4.068 21 N -0.986 5.986 22 Si 0.958 3.042 23 H -0.278 1.278 24 H -0.296 1.296 25 H -0.244 1.244 26 C -0.116 4.116 27 C 0.118 3.882 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.177 0.823 37 H 0.248 0.752 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.025 0.975 44 H 0.017 0.983 45 H 0.367 0.633 46 H 0.258 0.742 47 H 0.092 0.908 48 H 0.060 0.940 49 H 0.084 0.916 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.406 25.129 2.512 32.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.277 5.277 3 C -0.115 4.115 4 C -0.001 4.001 5 C -0.094 4.094 6 C -0.245 4.245 7 C -0.069 4.069 8 O -0.061 6.061 9 C -0.140 4.140 10 C 0.383 3.617 11 O -0.414 6.414 12 N -0.335 5.335 13 C -0.025 4.025 14 C -0.159 4.159 15 C -0.107 4.107 16 C 0.034 3.966 17 N -0.401 5.401 18 C -0.367 4.367 19 H 0.070 0.930 20 C -0.259 4.259 21 N -0.637 5.637 22 Si 0.784 3.216 23 H -0.204 1.204 24 H -0.223 1.223 25 H -0.168 1.168 26 C -0.155 4.155 27 C -0.004 4.004 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.194 0.806 37 H 0.264 0.736 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.043 0.957 44 H 0.035 0.965 45 H 0.201 0.799 46 H 0.067 0.933 47 H 0.111 0.889 48 H 0.078 0.922 49 H 0.102 0.898 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.713 25.192 1.905 32.045 hybrid contribution -0.627 -0.524 0.655 1.047 sum -20.341 24.668 2.559 32.075 Atomic orbital electron populations 1.22408 0.86596 1.02087 1.01064 1.61816 1.08535 1.14447 1.42854 1.22307 1.00543 0.87710 1.00965 1.20401 1.00148 0.87561 0.92004 1.20604 0.95791 0.96274 0.96718 1.21970 1.01722 0.94295 1.06504 1.25357 0.90324 0.99841 0.91418 1.84193 1.37101 1.31887 1.52911 1.21757 1.00439 0.84848 1.06907 1.16901 0.81268 0.84685 0.78846 1.90837 1.65910 1.21285 1.63406 1.48112 1.27578 1.07968 1.49877 1.22286 0.97101 0.79710 1.03448 1.21780 0.95272 0.99616 0.99217 1.21275 0.94753 0.94683 0.99984 1.20792 0.95732 0.82579 0.97465 1.42691 1.16639 1.01999 1.78785 1.19033 0.97069 0.86441 1.34151 0.93018 1.25580 1.02621 0.95126 1.02537 1.69900 1.38676 0.98931 1.56157 0.85373 0.80320 0.77685 0.78218 1.20393 1.22312 1.16850 1.21829 0.98395 0.92893 1.02383 1.21679 0.83100 1.00569 0.95028 0.91136 0.91786 0.94657 0.94730 0.92231 0.90702 0.90932 0.92610 0.80590 0.73623 0.86698 0.89972 0.91084 0.92488 0.90149 0.95686 0.96538 0.79864 0.93346 0.88910 0.92157 0.89821 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.43 127.69 1.20 1.61 16 2 N -0.55 -11.10 4.95 -953.49 -4.72 -15.82 16 3 C 0.03 0.54 9.57 127.69 1.22 1.77 16 4 C 0.13 2.55 4.53 85.56 0.39 2.93 16 5 C -0.09 -1.86 4.76 -19.74 -0.09 -1.95 16 6 C -0.23 -3.18 10.10 22.07 0.22 -2.96 16 7 C 0.00 -0.02 12.08 67.10 0.81 0.79 16 8 O -0.16 -3.22 7.07 -4.98 -0.04 -3.26 16 9 C -0.09 -2.08 6.85 24.07 0.16 -1.92 16 10 C 0.59 16.20 7.66 86.44 0.66 16.87 16 11 O -0.54 -16.77 14.49 -4.34 -0.06 -16.83 16 12 N -0.60 -14.75 2.98 -824.45 -2.46 -17.21 16 13 C 0.10 2.17 6.28 86.22 0.54 2.71 16 14 C -0.12 -3.23 5.23 30.53 0.16 -3.07 16 15 C -0.09 -2.45 2.19 -10.77 -0.02 -2.47 16 16 C 0.16 6.01 5.65 86.38 0.49 6.50 16 17 N -0.75 -34.85 5.12 -343.46 -1.76 -36.61 16 18 C -0.24 -13.58 10.47 84.03 0.88 -12.70 16 19 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 20 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 21 N -0.99 -63.61 13.97 21.65 0.30 -63.31 16 22 Si 0.96 44.69 27.74 68.60 1.90 46.59 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.24 -9.97 6.52 99.48 0.65 -9.32 16 26 C -0.12 -2.71 5.36 30.67 0.16 -2.54 16 27 C 0.12 2.62 6.43 86.36 0.55 3.18 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.02 6.59 -2.39 -0.02 1.00 16 30 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 1.13 8.12 -2.39 -0.02 1.11 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.75 7.14 -2.39 -0.02 1.74 16 35 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 36 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.25 0.88 8.06 -2.91 -0.02 0.85 16 38 H 0.12 2.50 3.76 -57.09 -0.21 2.28 16 39 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.07 2.07 7.15 -2.39 -0.02 2.06 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.37 15.84 4.71 -92.71 -0.44 15.40 16 46 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 47 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 49 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.09 2.09 7.02 -2.39 -0.02 2.08 16 Total: -1.00 -74.94 391.93 1.22 -73.73 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.23 Total: 27.50 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 7.81 Total: 5.22 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -8.63 Total: -132.95 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.10 Total: -20.09 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.59 kcal Total: -74.94 1.22 -73.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206057539.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.796 kcal (2) G-P(sol) polarization free energy of solvation -74.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds