Wall clock time and date at job start Tue Mar 31 2020 18:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 120.00223 * 2 1 4 4 C 1.34784 * 119.99671 * 180.02562 * 2 1 3 5 5 O 1.21280 * 119.99989 * 354.76138 * 4 2 1 6 6 C 1.50694 * 119.99704 * 175.03726 * 4 2 1 7 7 C 1.50700 * 115.55128 * 303.27232 * 6 4 2 8 8 O 1.21278 * 120.00490 * 112.40063 * 7 6 4 9 9 N 1.34778 * 119.99780 * 292.39519 * 7 6 4 10 10 C 1.47152 * 121.21496 * 4.96940 * 9 7 6 11 11 C 1.52834 * 107.97867 * 122.71343 * 10 9 7 12 12 C 1.53092 * 110.58471 * 57.33954 * 11 10 9 13 13 H 1.09005 * 112.48832 * 70.55593 * 12 11 10 14 14 C 1.56027 * 106.39897 * 195.43492 * 12 11 10 15 15 C 1.54497 * 102.61429 * 78.37560 * 14 12 11 16 16 N 1.47444 * 107.14606 * 22.84871 * 15 14 12 17 17 C 1.36934 * 126.05861 * 181.62095 * 16 15 14 18 18 H 1.08002 * 119.99700 * 180.02562 * 17 16 15 19 19 C 1.38809 * 120.00233 * 0.02562 * 17 16 15 20 20 N 1.31624 * 119.99984 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00057 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47252 * 59.99574 * 21 19 17 23 23 H 1.48499 * 109.47244 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47024 * 299.99606 * 21 19 17 25 25 C 1.46472 * 107.87960 * 1.62392 * 16 15 14 26 26 H 1.08994 * 107.85697 * 89.62451 * 25 16 15 27 27 C 1.46758 * 121.21663 * 184.68373 * 9 7 6 28 28 C 1.53004 * 117.49891 * 157.60199 * 6 4 2 29 29 C 1.53005 * 117.50047 * 88.93934 * 6 4 2 30 30 H 1.08998 * 109.46529 * 245.00490 * 1 2 3 31 31 H 1.08994 * 109.46539 * 5.00329 * 1 2 3 32 32 H 1.08998 * 109.47159 * 125.00290 * 1 2 3 33 33 H 1.09004 * 109.47077 * 264.83193 * 3 2 1 34 34 H 1.08991 * 109.46948 * 24.83153 * 3 2 1 35 35 H 1.09003 * 109.46929 * 144.83451 * 3 2 1 36 36 H 1.09003 * 109.75587 * 242.32661 * 10 9 7 37 37 H 1.08992 * 109.76048 * 3.04036 * 10 9 7 38 38 H 1.09004 * 109.25534 * 177.62484 * 11 10 9 39 39 H 1.09004 * 109.25347 * 297.09147 * 11 10 9 40 40 H 1.09000 * 110.78273 * 196.65960 * 14 12 11 41 41 H 1.09003 * 110.77823 * 320.09540 * 14 12 11 42 42 H 1.08995 * 109.90404 * 263.47190 * 15 14 12 43 43 H 1.08999 * 109.90573 * 142.22590 * 15 14 12 44 44 H 0.96998 * 119.99940 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.22478 * 352.84914 * 27 9 7 46 46 H 1.08999 * 109.23048 * 112.20973 * 27 9 7 47 47 H 1.09001 * 117.49818 * 359.97438 * 28 6 4 48 48 H 1.08999 * 117.50060 * 145.02380 * 28 6 4 49 49 H 1.08992 * 117.50153 * 214.97619 * 29 6 4 50 50 H 1.09005 * 117.49731 * 359.97438 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5363 -2.2154 0.0949 6 6 3.6416 -1.1697 -0.1134 7 6 4.2034 -0.4742 -1.3265 8 8 4.8391 0.5506 -1.1980 9 7 3.9994 -0.9911 -2.5544 10 6 3.1430 -2.1712 -2.7525 11 6 2.0354 -1.7908 -3.7345 12 6 2.6328 -1.2929 -5.0531 13 1 3.0987 -2.0931 -5.6283 14 6 1.4786 -0.5700 -5.8144 15 6 1.4093 0.7988 -5.1012 16 7 2.7233 1.0285 -4.4731 17 6 3.0755 2.1128 -3.7144 18 1 4.0705 2.1815 -3.3000 19 6 2.1538 3.1234 -3.4781 20 7 0.9414 3.0398 -3.9836 21 14 2.6345 4.6027 -2.4438 22 1 3.7783 5.3024 -3.0821 23 1 1.4805 5.5319 -2.3425 24 1 3.0269 4.1502 -1.0850 25 6 3.5852 -0.1085 -4.8044 26 1 4.0988 0.1222 -5.7376 27 6 4.6184 -0.3938 -3.7436 28 6 4.3869 -2.4023 0.4026 29 6 4.4478 -1.0877 1.1844 30 1 -0.3632 -0.4342 0.9314 31 1 -0.3632 1.0237 -0.0896 32 1 -0.3633 -0.5895 -0.8418 33 1 2.4595 1.5371 -1.0235 34 1 1.5716 2.0496 0.4315 35 1 3.1068 1.1632 0.5919 36 1 3.7337 -2.9904 -3.1626 37 1 2.7054 -2.4727 -1.8009 38 1 1.4122 -2.6637 -3.9291 39 1 1.4229 -1.0021 -3.2975 40 1 1.7289 -0.4450 -6.8679 41 1 0.5405 -1.1133 -5.7006 42 1 0.6314 0.7806 -4.3381 43 1 1.2024 1.5853 -5.8269 44 1 0.2974 3.7462 -3.8188 45 1 5.1094 0.5381 -3.4629 46 1 5.3608 -1.0828 -4.1463 47 1 3.7902 -3.2113 0.8241 48 1 5.2837 -2.7099 -0.1351 49 1 5.3845 -0.5311 1.1607 50 1 3.8911 -1.0315 2.1200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223894841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:58 Heat of formation + Delta-G solvation = 3.847707 kcal Electronic energy + Delta-G solvation = -33302.799559 eV Core-core repulsion = 29332.345769 eV Total energy + Delta-G solvation = -3970.453790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.83371 -39.27450 -38.06239 -35.95244 -35.28309 -34.85047 -32.83964 -31.18589 -29.30475 -28.38640 -28.07800 -26.38533 -24.96061 -24.47819 -23.06081 -22.64888 -22.35414 -20.57884 -19.98338 -18.91580 -17.96721 -17.36110 -16.56375 -16.06182 -15.83531 -15.73770 -15.14098 -14.82134 -14.57610 -14.24896 -14.15356 -13.92869 -13.69106 -13.20281 -12.93474 -12.79631 -12.58090 -12.47538 -12.33340 -12.15819 -11.98869 -11.66334 -11.60945 -11.57358 -11.39061 -11.18385 -11.01972 -10.85610 -10.80639 -10.68952 -10.49356 -10.15576 -9.90270 -9.85218 -9.72150 -9.64005 -9.48935 -9.21711 -8.56201 -8.36386 -8.12724 -6.77659 -5.65884 -2.97341 2.58317 2.89738 3.14413 3.32564 3.41720 3.46732 3.50216 3.83433 4.52976 4.54947 4.62489 4.78313 4.91538 5.12293 5.19761 5.38062 5.42613 5.51072 5.52618 5.56715 5.59155 5.66620 5.68384 5.71775 5.75882 5.79133 5.88075 5.96492 6.00078 6.03817 6.05725 6.08398 6.18631 6.28332 6.31015 6.44229 6.52648 6.57975 6.63624 6.67631 6.74612 6.97140 7.08780 7.53579 7.62710 7.63492 7.84501 7.88874 8.28077 8.28477 8.58963 9.27227 9.87876 10.54160 11.46007 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010353 B = 0.007171 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.908307 B = 3903.865566 C = 4817.668819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.599 5.599 3 C 0.069 3.931 4 C 0.560 3.440 5 O -0.543 6.543 6 C -0.188 4.188 7 C 0.564 3.436 8 O -0.524 6.524 9 N -0.584 5.584 10 C 0.102 3.898 11 C -0.119 4.119 12 C -0.101 4.101 13 H 0.075 0.925 14 C -0.144 4.144 15 C 0.181 3.819 16 N -0.588 5.588 17 C -0.209 4.209 18 H 0.081 0.919 19 C -0.006 4.006 20 N -0.923 5.923 21 Si 0.896 3.104 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.281 1.281 25 C 0.153 3.847 26 H 0.028 0.972 27 C 0.113 3.887 28 C -0.132 4.132 29 C -0.131 4.131 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.249 0.751 45 H 0.096 0.904 46 H 0.055 0.945 47 H 0.112 0.888 48 H 0.105 0.895 49 H 0.113 0.887 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 -10.994 5.534 12.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.330 5.330 3 C -0.074 4.074 4 C 0.346 3.654 5 O -0.422 6.422 6 C -0.195 4.195 7 C 0.349 3.651 8 O -0.400 6.400 9 N -0.316 5.316 10 C -0.021 4.021 11 C -0.157 4.157 12 C -0.121 4.121 13 H 0.093 0.907 14 C -0.182 4.182 15 C 0.056 3.944 16 N -0.314 5.314 17 C -0.337 4.337 18 H 0.099 0.901 19 C -0.202 4.202 20 N -0.572 5.572 21 Si 0.727 3.273 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.207 1.207 25 C 0.045 3.955 26 H 0.045 0.955 27 C -0.010 4.010 28 C -0.170 4.170 29 C -0.169 4.169 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.114 0.886 46 H 0.073 0.927 47 H 0.130 0.870 48 H 0.123 0.877 49 H 0.131 0.869 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.104 -10.711 5.721 12.534 hybrid contribution -0.056 1.043 0.332 1.096 sum 3.049 -9.668 6.053 11.807 Atomic orbital electron populations 1.21606 0.78779 1.02804 1.01586 1.47589 1.07141 1.06573 1.71692 1.22198 0.96255 0.83634 1.05271 1.18953 0.86868 0.83414 0.76132 1.90658 1.69383 1.31232 1.50943 1.21453 0.93047 1.07129 0.97834 1.18742 0.80031 0.83717 0.82578 1.90697 1.41545 1.22418 1.85336 1.47703 1.48249 1.29706 1.05892 1.21824 0.92226 0.87048 1.01009 1.21777 0.97455 1.01122 0.95338 1.22375 0.97151 0.96729 0.95819 0.90686 1.23155 0.97108 0.99180 0.98747 1.21184 0.87993 0.90208 0.94989 1.44291 1.09106 1.18354 1.59612 1.18974 0.97203 0.94887 1.22626 0.90148 1.24654 0.96024 0.98445 1.01063 1.69954 1.04259 1.33797 1.49142 0.86442 0.76971 0.83042 0.80834 1.21372 1.21972 1.20736 1.20634 0.91628 0.88546 0.94725 0.95505 1.21339 0.95243 0.99096 0.85282 1.23071 1.01033 0.91266 1.01607 1.23051 1.01281 0.99939 0.92602 0.92681 0.90430 0.91849 0.89099 0.91532 0.91126 0.91914 0.89290 0.92143 0.90396 0.92765 0.92388 0.93830 0.94171 0.94070 0.88584 0.92699 0.86957 0.87670 0.86904 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 10.16 59.85 0.61 2.07 16 2 N -0.60 -10.44 3.27 -189.52 -0.62 -11.06 16 3 C 0.07 1.26 8.91 59.85 0.53 1.79 16 4 C 0.56 9.69 5.74 -10.99 -0.06 9.63 16 5 O -0.54 -10.08 15.46 5.56 0.09 -10.00 16 6 C -0.19 -2.95 0.19 -156.81 -0.03 -2.98 16 7 C 0.56 10.31 5.51 -10.98 -0.06 10.25 16 8 O -0.52 -11.03 15.07 5.56 0.08 -10.95 16 9 N -0.58 -10.26 2.97 -174.36 -0.52 -10.78 16 10 C 0.10 1.59 6.16 -3.77 -0.02 1.57 16 11 C -0.12 -1.98 5.04 -26.77 -0.13 -2.12 16 12 C -0.10 -1.69 3.68 -88.43 -0.33 -2.01 16 13 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 14 C -0.14 -2.60 6.33 -24.33 -0.15 -2.75 16 15 C 0.18 4.21 4.61 -2.74 -0.01 4.19 16 16 N -0.59 -13.96 3.19 -164.67 -0.53 -14.49 16 17 C -0.21 -5.49 9.34 -15.06 -0.14 -5.63 16 18 H 0.08 2.18 6.49 -52.49 -0.34 1.84 16 19 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 20 N -0.92 -26.01 10.38 55.49 0.58 -25.43 16 21 Si 0.90 21.95 29.55 -169.99 -5.02 16.93 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 C 0.15 2.98 2.96 -68.52 -0.20 2.78 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 C 0.11 2.06 5.66 -5.00 -0.03 2.03 16 28 C -0.13 -1.62 9.61 -26.69 -0.26 -1.88 16 29 C -0.13 -1.66 9.20 -26.69 -0.25 -1.91 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.13 7.77 -51.93 -0.40 0.73 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 2.06 7.10 -51.93 -0.37 1.70 16 34 H 0.07 1.10 7.86 -51.93 -0.41 0.70 16 35 H 0.07 1.22 6.31 -51.93 -0.33 0.90 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.46 4.29 -51.93 -0.22 1.23 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.61 6.85 -51.93 -0.36 1.25 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.97 7.97 -51.93 -0.41 0.56 16 42 H 0.04 1.14 7.04 -51.93 -0.37 0.77 16 43 H 0.04 1.05 7.57 -51.93 -0.39 0.66 16 44 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.10 2.01 5.49 -51.93 -0.29 1.72 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.11 1.32 7.84 -51.93 -0.41 0.91 16 48 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.11 1.41 8.03 -51.93 -0.42 0.99 16 50 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -30.67 380.16 -8.92 -39.59 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -8.07 Total: 5.69 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: -0.63 Total: 14.77 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -1.09 Total: -61.76 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: 0.17 Total: -20.95 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.67 -8.92 -39.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223894841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.435 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds