Wall clock time and date at job start Tue Mar 31 2020 18:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 120.00223 * 2 1 4 4 C 1.34784 * 119.99671 * 180.02562 * 2 1 3 5 5 O 1.21280 * 119.99989 * 354.76138 * 4 2 1 6 6 C 1.50694 * 119.99704 * 175.03726 * 4 2 1 7 7 C 1.50700 * 115.55128 * 303.27232 * 6 4 2 8 8 O 1.21278 * 120.00490 * 112.40063 * 7 6 4 9 9 N 1.34778 * 119.99780 * 292.39519 * 7 6 4 10 10 C 1.47152 * 121.21496 * 4.96940 * 9 7 6 11 11 C 1.52834 * 107.97867 * 122.71343 * 10 9 7 12 12 C 1.53092 * 110.58471 * 57.33954 * 11 10 9 13 13 H 1.09005 * 112.48832 * 70.55593 * 12 11 10 14 14 C 1.56027 * 106.39897 * 195.43492 * 12 11 10 15 15 C 1.54497 * 102.61429 * 78.37560 * 14 12 11 16 16 N 1.47444 * 107.14606 * 22.84871 * 15 14 12 17 17 C 1.36934 * 126.05861 * 181.62095 * 16 15 14 18 18 H 1.08002 * 119.99700 * 180.02562 * 17 16 15 19 19 C 1.38809 * 120.00233 * 0.02562 * 17 16 15 20 20 N 1.31624 * 119.99984 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00057 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47252 * 59.99574 * 21 19 17 23 23 H 1.48499 * 109.47244 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47024 * 299.99606 * 21 19 17 25 25 C 1.46472 * 107.87960 * 1.62392 * 16 15 14 26 26 H 1.08994 * 107.85697 * 89.62451 * 25 16 15 27 27 C 1.46758 * 121.21663 * 184.68373 * 9 7 6 28 28 C 1.53004 * 117.49891 * 157.60199 * 6 4 2 29 29 C 1.53005 * 117.50047 * 88.93934 * 6 4 2 30 30 H 1.08998 * 109.46529 * 245.00490 * 1 2 3 31 31 H 1.08994 * 109.46539 * 5.00329 * 1 2 3 32 32 H 1.08998 * 109.47159 * 125.00290 * 1 2 3 33 33 H 1.09004 * 109.47077 * 264.83193 * 3 2 1 34 34 H 1.08991 * 109.46948 * 24.83153 * 3 2 1 35 35 H 1.09003 * 109.46929 * 144.83451 * 3 2 1 36 36 H 1.09003 * 109.75587 * 242.32661 * 10 9 7 37 37 H 1.08992 * 109.76048 * 3.04036 * 10 9 7 38 38 H 1.09004 * 109.25534 * 177.62484 * 11 10 9 39 39 H 1.09004 * 109.25347 * 297.09147 * 11 10 9 40 40 H 1.09000 * 110.78273 * 196.65960 * 14 12 11 41 41 H 1.09003 * 110.77823 * 320.09540 * 14 12 11 42 42 H 1.08995 * 109.90404 * 263.47190 * 15 14 12 43 43 H 1.08999 * 109.90573 * 142.22590 * 15 14 12 44 44 H 0.96998 * 119.99940 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.22478 * 352.84914 * 27 9 7 46 46 H 1.08999 * 109.23048 * 112.20973 * 27 9 7 47 47 H 1.09001 * 117.49818 * 359.97438 * 28 6 4 48 48 H 1.08999 * 117.50060 * 145.02380 * 28 6 4 49 49 H 1.08992 * 117.50153 * 214.97619 * 29 6 4 50 50 H 1.09005 * 117.49731 * 359.97438 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5363 -2.2154 0.0949 6 6 3.6416 -1.1697 -0.1134 7 6 4.2034 -0.4742 -1.3265 8 8 4.8391 0.5506 -1.1980 9 7 3.9994 -0.9911 -2.5544 10 6 3.1430 -2.1712 -2.7525 11 6 2.0354 -1.7908 -3.7345 12 6 2.6328 -1.2929 -5.0531 13 1 3.0987 -2.0931 -5.6283 14 6 1.4786 -0.5700 -5.8144 15 6 1.4093 0.7988 -5.1012 16 7 2.7233 1.0285 -4.4731 17 6 3.0755 2.1128 -3.7144 18 1 4.0705 2.1815 -3.3000 19 6 2.1538 3.1234 -3.4781 20 7 0.9414 3.0398 -3.9836 21 14 2.6345 4.6027 -2.4438 22 1 3.7783 5.3024 -3.0821 23 1 1.4805 5.5319 -2.3425 24 1 3.0269 4.1502 -1.0850 25 6 3.5852 -0.1085 -4.8044 26 1 4.0988 0.1222 -5.7376 27 6 4.6184 -0.3938 -3.7436 28 6 4.3869 -2.4023 0.4026 29 6 4.4478 -1.0877 1.1844 30 1 -0.3632 -0.4342 0.9314 31 1 -0.3632 1.0237 -0.0896 32 1 -0.3633 -0.5895 -0.8418 33 1 2.4595 1.5371 -1.0235 34 1 1.5716 2.0496 0.4315 35 1 3.1068 1.1632 0.5919 36 1 3.7337 -2.9904 -3.1626 37 1 2.7054 -2.4727 -1.8009 38 1 1.4122 -2.6637 -3.9291 39 1 1.4229 -1.0021 -3.2975 40 1 1.7289 -0.4450 -6.8679 41 1 0.5405 -1.1133 -5.7006 42 1 0.6314 0.7806 -4.3381 43 1 1.2024 1.5853 -5.8269 44 1 0.2974 3.7462 -3.8188 45 1 5.1094 0.5381 -3.4629 46 1 5.3608 -1.0828 -4.1463 47 1 3.7902 -3.2113 0.8241 48 1 5.2837 -2.7099 -0.1351 49 1 5.3845 -0.5311 1.1607 50 1 3.8911 -1.0315 2.1200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223894841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:57 Heat of formation + Delta-G solvation = -15.327085 kcal Electronic energy + Delta-G solvation = -33303.631040 eV Core-core repulsion = 29332.345769 eV Total energy + Delta-G solvation = -3971.285272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.15640 -40.72658 -39.52694 -37.16317 -36.72359 -36.33461 -34.62902 -32.84972 -30.88594 -30.06608 -29.41230 -27.77623 -26.53426 -26.20580 -24.44673 -23.96440 -23.45095 -21.97984 -21.71680 -20.37862 -19.36435 -18.72295 -18.39216 -17.39573 -17.24723 -17.08474 -16.83065 -16.30134 -16.04809 -15.90753 -15.53395 -15.44631 -15.13117 -14.71300 -14.34351 -14.23128 -14.00525 -13.87466 -13.70344 -13.67578 -13.60484 -13.15545 -13.06209 -12.94037 -12.88420 -12.65395 -12.61844 -12.51318 -12.37097 -12.12995 -12.06046 -11.64579 -11.58511 -11.41210 -11.30353 -11.18549 -11.01326 -10.62158 -10.60816 -9.78665 -9.52078 -8.75575 -7.76039 -5.06175 1.23766 1.40592 1.41715 1.48827 1.58225 1.87435 2.03917 2.51984 2.70007 3.29916 3.37405 3.42987 3.61237 3.73553 3.77514 3.87506 3.92397 4.09476 4.10203 4.26851 4.27435 4.36694 4.44084 4.46503 4.54924 4.57147 4.59796 4.64359 4.65886 4.73580 4.75023 4.82836 4.85937 4.87197 4.96387 4.99077 5.10311 5.10391 5.15229 5.27893 5.31951 5.56960 5.61213 5.67666 5.72877 5.83806 6.17397 6.27224 6.48951 6.93764 7.19907 7.22168 7.88346 8.53191 9.34378 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010353 B = 0.007171 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.908307 B = 3903.865566 C = 4817.668819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.606 5.606 3 C 0.084 3.916 4 C 0.560 3.440 5 O -0.556 6.556 6 C -0.214 4.214 7 C 0.560 3.440 8 O -0.562 6.562 9 N -0.587 5.587 10 C 0.104 3.896 11 C -0.114 4.114 12 C -0.084 4.084 13 H 0.122 0.878 14 C -0.131 4.131 15 C 0.192 3.808 16 N -0.603 5.603 17 C -0.194 4.194 18 H 0.068 0.932 19 C -0.054 4.054 20 N -0.947 5.947 21 Si 0.940 3.060 22 H -0.290 1.290 23 H -0.297 1.297 24 H -0.274 1.274 25 C 0.142 3.858 26 H 0.031 0.969 27 C 0.117 3.883 28 C -0.106 4.106 29 C -0.121 4.121 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.029 0.971 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.004 0.996 43 H -0.001 1.001 44 H 0.240 0.760 45 H 0.061 0.939 46 H 0.095 0.905 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.114 0.886 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.471 -14.177 5.910 15.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.337 5.337 3 C -0.059 4.059 4 C 0.348 3.652 5 O -0.436 6.436 6 C -0.220 4.220 7 C 0.347 3.653 8 O -0.441 6.441 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.152 4.152 12 C -0.103 4.103 13 H 0.140 0.860 14 C -0.169 4.169 15 C 0.067 3.933 16 N -0.328 5.328 17 C -0.324 4.324 18 H 0.086 0.914 19 C -0.247 4.247 20 N -0.598 5.598 21 Si 0.771 3.229 22 H -0.217 1.217 23 H -0.223 1.223 24 H -0.200 1.200 25 C 0.035 3.965 26 H 0.048 0.952 27 C -0.006 4.006 28 C -0.143 4.143 29 C -0.159 4.159 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.022 0.978 43 H 0.017 0.983 44 H 0.049 0.951 45 H 0.080 0.920 46 H 0.113 0.887 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.132 0.868 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.376 -13.940 6.089 15.829 hybrid contribution -0.422 2.016 0.182 2.068 sum 3.954 -11.924 6.271 14.041 Atomic orbital electron populations 1.21667 0.78056 1.03007 1.02052 1.47717 1.07808 1.06440 1.71756 1.21922 0.97059 0.84565 1.02399 1.19203 0.87591 0.82951 0.75431 1.90638 1.69929 1.31430 1.51640 1.21375 0.92055 1.10378 0.98185 1.19158 0.79461 0.83240 0.83443 1.90671 1.43395 1.23998 1.85993 1.47843 1.48228 1.30137 1.05571 1.21957 0.92027 0.87116 1.00682 1.21715 0.97646 1.00545 0.95301 1.22412 0.95437 0.96451 0.95985 0.86030 1.23022 0.98887 0.95993 0.99025 1.20884 0.86963 0.92319 0.93181 1.44468 1.10099 1.19211 1.59027 1.18974 0.96344 0.95522 1.21537 0.91371 1.25162 0.96236 1.00612 1.02663 1.70145 1.04883 1.33999 1.50746 0.85727 0.76228 0.80786 0.80185 1.21707 1.22334 1.19954 1.20928 0.92104 0.88316 0.95128 0.95195 1.21243 0.95313 0.98821 0.85238 1.23220 1.00625 0.90482 0.99963 1.23188 1.00678 1.00190 0.91802 0.90544 0.90127 0.93230 0.93808 0.90324 0.90301 0.87935 0.89882 0.89388 0.95253 0.91195 0.90748 0.97758 0.98296 0.95082 0.92047 0.88676 0.85959 0.85926 0.86779 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.94 10.16 127.77 1.30 4.24 16 2 N -0.61 -21.19 3.27 -871.89 -2.85 -24.05 16 3 C 0.08 3.13 8.91 127.77 1.14 4.26 16 4 C 0.56 18.84 5.74 87.65 0.50 19.35 16 5 O -0.56 -19.79 15.46 -3.03 -0.05 -19.83 16 6 C -0.21 -6.35 0.19 -53.67 -0.01 -6.36 16 7 C 0.56 20.08 5.51 87.66 0.48 20.57 16 8 O -0.56 -23.98 15.07 -3.02 -0.05 -24.02 16 9 N -0.59 -19.67 2.97 -823.96 -2.45 -22.12 16 10 C 0.10 2.92 6.16 86.20 0.53 3.45 16 11 C -0.11 -3.51 5.04 30.57 0.15 -3.36 16 12 C -0.08 -2.51 3.68 -9.37 -0.03 -2.55 16 13 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 14 C -0.13 -4.53 6.33 32.15 0.20 -4.33 16 15 C 0.19 9.23 4.61 86.71 0.40 9.63 16 16 N -0.60 -29.37 3.19 -674.90 -2.16 -31.53 16 17 C -0.19 -10.65 9.34 84.03 0.78 -9.87 16 18 H 0.07 3.88 6.49 -2.91 -0.02 3.86 16 19 C -0.05 -3.07 5.49 84.86 0.47 -2.61 16 20 N -0.95 -56.37 10.38 21.65 0.22 -56.14 16 21 Si 0.94 46.95 29.55 68.60 2.03 48.97 16 22 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 23 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 24 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 25 C 0.14 5.35 2.96 44.62 0.13 5.48 16 26 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 27 C 0.12 4.07 5.66 85.62 0.48 4.56 16 28 C -0.11 -2.24 9.61 30.62 0.29 -1.95 16 29 C -0.12 -2.79 9.20 30.62 0.28 -2.51 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 2.41 7.77 -2.39 -0.02 2.39 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 2.07 7.10 -2.38 -0.02 2.06 16 34 H 0.08 2.66 7.86 -2.39 -0.02 2.64 16 35 H 0.08 2.76 6.31 -2.39 -0.02 2.75 16 36 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 2.49 4.29 -2.39 -0.01 2.48 16 38 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.03 1.20 6.85 -2.39 -0.02 1.18 16 40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.07 2.34 7.97 -2.39 -0.02 2.32 16 42 H 0.00 0.23 7.04 -2.39 -0.02 0.21 16 43 H 0.00 -0.07 7.57 -2.39 -0.02 -0.08 16 44 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 45 H 0.06 2.59 5.49 -2.39 -0.01 2.58 16 46 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.12 2.41 7.84 -2.39 -0.02 2.39 16 48 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.11 2.63 8.03 -2.39 -0.02 2.61 16 50 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -71.97 380.16 2.74 -69.23 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.94 Total: 21.47 kcal Atomic # 6 Polarization: 30.90 SS G_CDS: 7.11 Total: 38.01 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -7.24 Total: -133.83 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.09 Total: -43.85 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Total: -71.97 2.74 -69.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223894841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.899 kcal (2) G-P(sol) polarization free energy of solvation -71.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds