Wall clock time and date at job start Tue Mar 31 2020 18:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99517 * 2 1 4 4 C 1.53007 * 109.46716 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46705 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.46711 * 179.97438 * 5 4 3 7 7 O 1.21274 * 119.99782 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99435 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99503 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47003 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47277 * 180.02562 * 10 9 8 12 12 N 1.46491 * 109.47375 * 179.97438 * 11 10 9 13 13 C 1.36942 * 119.99847 * 90.00151 * 12 11 10 14 14 H 1.07994 * 119.99881 * 319.91739 * 13 12 11 15 15 C 1.38811 * 120.00112 * 139.92146 * 13 12 11 16 16 N 1.31619 * 119.99950 * 340.16467 * 15 13 12 17 17 Si 1.86799 * 120.00208 * 160.16409 * 15 13 12 18 18 H 1.48500 * 109.46882 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47275 * 119.99843 * 17 15 13 20 20 H 1.48502 * 109.47201 * 239.99985 * 17 15 13 21 21 C 1.46503 * 120.00305 * 269.99948 * 12 11 10 22 22 C 1.50700 * 109.46916 * 88.01674 * 21 12 11 23 23 C 1.38672 * 120.42020 * 263.14357 * 22 21 12 24 24 C 1.38630 * 118.42395 * 179.78508 * 23 22 21 25 25 C 1.38225 * 119.15686 * 0.51172 * 24 23 22 26 26 N 1.31856 * 120.76775 * 359.72464 * 25 24 23 27 27 C 1.31887 * 121.72096 * 0.02562 * 26 25 24 28 28 H 1.09006 * 109.47008 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47578 * 299.99831 * 1 2 3 30 30 H 1.09000 * 109.47136 * 60.00222 * 1 2 3 31 31 H 1.09003 * 109.47112 * 60.00239 * 3 2 1 32 32 H 1.08995 * 109.47458 * 299.99600 * 3 2 1 33 33 H 1.08996 * 109.47242 * 59.99903 * 4 3 2 34 34 H 1.09004 * 109.46713 * 299.99832 * 4 3 2 35 35 H 1.08996 * 109.47608 * 59.99810 * 5 4 3 36 36 H 1.08995 * 109.47205 * 299.99482 * 5 4 3 37 37 H 0.96998 * 120.00383 * 0.02562 * 8 6 5 38 38 H 1.09003 * 109.46932 * 60.00387 * 9 8 6 39 39 H 1.08999 * 109.47058 * 300.00671 * 9 8 6 40 40 H 1.08996 * 109.47431 * 59.99940 * 10 9 8 41 41 H 1.09004 * 109.47093 * 299.99521 * 10 9 8 42 42 H 1.08999 * 109.46857 * 300.00422 * 11 10 9 43 43 H 1.09003 * 109.46859 * 59.99971 * 11 10 9 44 44 H 0.96997 * 120.00327 * 180.02562 * 16 15 13 45 45 H 1.08996 * 109.47217 * 208.01697 * 21 12 11 46 46 H 1.08998 * 109.46980 * 328.01998 * 21 12 11 47 47 H 1.08008 * 120.78939 * 0.02562 * 23 22 21 48 48 H 1.07999 * 120.41697 * 180.21897 * 24 23 22 49 49 H 1.07998 * 119.61790 * 179.75120 * 25 24 23 50 50 H 1.08007 * 119.61411 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1576 2.5825 0.0013 6 6 5.6600 2.4636 0.0026 7 8 6.1815 1.3687 0.0034 8 7 6.4238 3.5740 0.0028 9 6 7.8843 3.4583 0.0046 10 6 8.5065 4.8560 0.0051 11 6 10.0318 4.7353 0.0063 12 7 10.6276 6.0736 0.0062 13 6 10.9051 6.6996 1.1921 14 1 10.2121 6.6254 2.0170 15 6 12.0772 7.4297 1.3339 16 7 13.0872 7.2180 0.5169 17 14 12.2211 8.7124 2.6842 18 1 10.9562 8.7576 3.4608 19 1 13.3447 8.3564 3.5875 20 1 12.4766 10.0435 2.0773 21 6 10.9265 6.7423 -1.2626 22 6 9.7145 7.5102 -1.7234 23 6 8.8413 6.9557 -2.6470 24 6 7.7370 7.6966 -3.0387 25 6 7.5502 8.9589 -2.5074 26 7 8.4040 9.4566 -1.6345 27 6 9.4624 8.7782 -1.2356 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8574 0.6437 -0.8891 34 1 3.8566 0.6440 0.8909 35 1 3.8356 3.1233 0.8912 36 1 3.8364 3.1236 -0.8887 37 1 6.0066 4.4497 0.0025 38 1 8.2069 2.9169 -0.8847 39 1 8.2048 2.9179 0.8952 40 1 8.1838 5.3971 0.8945 41 1 8.1860 5.3968 -0.8854 42 1 10.3526 4.1944 0.8965 43 1 10.3541 4.1944 -0.8834 44 1 13.9064 7.7279 0.6162 45 1 11.7608 7.4298 -1.1232 46 1 11.1912 5.9970 -2.0125 47 1 9.0153 5.9683 -3.0488 48 1 7.0343 7.2945 -3.7535 49 1 6.6946 9.5442 -2.8103 50 1 10.1400 9.2190 -0.5193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230696194.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:51 Heat of formation + Delta-G solvation = -45.975679 kcal Electronic energy + Delta-G solvation = -28400.664763 eV Core-core repulsion = 24428.050469 eV Total energy + Delta-G solvation = -3972.614295 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.77162 -39.54953 -38.22798 -36.50316 -35.00225 -33.85301 -32.27969 -32.08975 -31.21329 -29.85690 -28.19367 -26.31010 -25.89282 -25.03022 -22.92500 -22.78542 -21.94151 -21.23624 -20.59388 -19.94908 -17.29381 -16.95891 -16.68277 -16.52925 -16.47986 -15.84544 -15.69363 -15.57993 -15.15091 -14.92599 -14.76397 -14.39969 -13.89298 -13.75022 -13.42847 -13.30523 -13.07766 -12.84889 -12.56738 -12.43441 -12.40322 -12.11135 -11.97724 -11.76874 -11.35205 -11.30147 -11.21142 -11.18321 -11.07929 -10.83617 -10.67447 -10.22890 -10.19350 -10.02771 -9.98065 -9.86376 -9.20127 -8.98059 -8.93452 -8.62052 -8.31558 -6.73344 -5.96687 -3.56413 1.69322 1.82632 2.63298 3.05774 3.27211 3.37543 3.39974 3.56634 4.30510 4.42062 4.53962 4.64128 4.76597 4.94478 4.95219 4.97963 5.06432 5.08722 5.13602 5.17255 5.23419 5.25543 5.27407 5.35181 5.42648 5.48368 5.60643 5.69528 5.81173 5.82882 5.83244 5.99592 6.04590 6.09342 6.15617 6.35438 6.38346 6.52727 6.55828 6.65552 6.72721 6.80318 6.93642 7.00284 7.27320 7.43681 7.52266 7.69527 8.22942 8.36986 8.53848 9.01404 9.61381 10.21160 11.04311 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.002308 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.160359 B =12129.433245 C =13276.423291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.104 4.104 5 C -0.139 4.139 6 C 0.509 3.491 7 O -0.543 6.543 8 N -0.727 5.727 9 C 0.120 3.880 10 C -0.153 4.153 11 C 0.153 3.847 12 N -0.571 5.571 13 C -0.263 4.263 14 H 0.060 0.940 15 C 0.018 3.982 16 N -0.881 5.881 17 Si 0.893 3.107 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.284 1.284 21 C 0.180 3.820 22 C -0.118 4.118 23 C -0.085 4.085 24 C -0.182 4.182 25 C 0.068 3.932 26 N -0.491 5.491 27 C 0.113 3.887 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.400 0.600 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.037 0.963 44 H 0.257 0.743 45 H 0.102 0.898 46 H 0.037 0.963 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.141 0.859 50 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.269 -5.675 -5.019 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.142 4.142 5 C -0.179 4.179 6 C 0.295 3.705 7 O -0.420 6.420 8 N -0.379 5.379 9 C -0.004 4.004 10 C -0.193 4.193 11 C 0.025 3.975 12 N -0.289 5.289 13 C -0.392 4.392 14 H 0.078 0.922 15 C -0.183 4.183 16 N -0.522 5.522 17 Si 0.722 3.278 18 H -0.199 1.199 19 H -0.214 1.214 20 H -0.211 1.211 21 C 0.053 3.947 22 C -0.123 4.123 23 C -0.112 4.112 24 C -0.202 4.202 25 C -0.090 4.090 26 N -0.200 5.200 27 C -0.044 4.044 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.233 0.767 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.120 0.880 46 H 0.056 0.944 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.158 0.842 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.672 -5.749 -4.652 20.083 hybrid contribution -0.356 0.635 0.310 0.791 sum -19.028 -5.114 -4.342 20.176 Atomic orbital electron populations 1.22746 0.81023 1.02809 0.99945 1.87896 1.19682 1.28042 1.95409 1.22568 0.94170 0.84686 1.00169 1.21215 0.92000 0.95928 1.05044 1.21552 0.92488 0.99291 1.04561 1.20552 0.89335 0.84421 0.76178 1.90713 1.75182 1.26635 1.49482 1.46160 1.07872 1.08747 1.75083 1.21439 0.78109 0.98927 1.01889 1.22554 1.00353 0.93984 1.02435 1.20768 0.89120 0.87945 0.99633 1.43646 1.71230 1.12310 1.01733 1.19006 1.00645 1.28152 0.91446 0.92215 1.25262 0.94454 1.00846 0.97749 1.70001 1.02890 1.39967 1.39298 0.86389 0.77947 0.81690 0.81795 1.19888 1.21420 1.21056 1.19954 0.92472 0.95532 0.86704 1.22290 1.00384 0.95633 0.94015 1.21443 0.93877 0.99307 0.96529 1.21958 0.99155 0.96685 1.02368 1.22471 0.98072 0.93615 0.94796 1.67646 1.03623 1.37073 1.11665 1.22691 0.93537 0.91570 0.96641 0.89603 0.94068 0.94083 0.93226 0.93233 0.90259 0.90243 0.88760 0.88784 0.76660 0.91889 0.91696 0.91806 0.91873 0.92751 0.94496 0.93251 0.88012 0.94418 0.86023 0.86168 0.84155 0.83060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.89 10.70 -35.23 -0.38 -4.26 16 3 C 0.06 0.48 5.94 37.16 0.22 0.71 16 4 C -0.10 -0.99 4.87 -26.73 -0.13 -1.13 16 5 C -0.14 -1.15 5.70 -27.88 -0.16 -1.31 16 6 C 0.51 6.38 7.83 -10.98 -0.09 6.30 16 7 O -0.54 -9.10 15.98 5.56 0.09 -9.01 16 8 N -0.73 -8.66 5.56 -60.29 -0.33 -8.99 16 9 C 0.12 1.69 5.67 -4.04 -0.02 1.67 16 10 C -0.15 -2.39 5.62 -26.73 -0.15 -2.54 16 11 C 0.15 2.87 5.71 -4.04 -0.02 2.84 16 12 N -0.57 -12.62 2.39 -174.61 -0.42 -13.04 16 13 C -0.26 -6.53 9.44 -15.06 -0.14 -6.67 16 14 H 0.06 1.52 7.90 -52.49 -0.41 1.10 16 15 C 0.02 0.47 4.95 -17.43 -0.09 0.38 16 16 N -0.88 -23.45 11.59 55.49 0.64 -22.81 16 17 Si 0.89 20.32 29.60 -169.99 -5.03 15.29 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.18 3.78 5.47 -5.19 -0.03 3.75 16 22 C -0.12 -2.20 5.17 -104.48 -0.54 -2.74 16 23 C -0.08 -1.32 8.00 -39.28 -0.31 -1.64 16 24 C -0.18 -2.53 10.11 -39.44 -0.40 -2.93 16 25 C 0.07 1.03 11.18 -17.55 -0.20 0.83 16 26 N -0.49 -9.02 10.36 -13.25 -0.14 -9.16 16 27 C 0.11 2.21 10.89 -17.55 -0.19 2.02 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.40 3.88 8.47 -40.82 -0.35 3.53 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.99 5.85 -51.93 -0.30 0.68 16 42 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 43 H 0.04 0.66 7.91 -51.93 -0.41 0.25 16 44 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 45 H 0.10 2.45 5.66 -51.93 -0.29 2.15 16 46 H 0.04 0.75 7.83 -51.93 -0.41 0.34 16 47 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 48 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 49 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 50 H 0.15 3.17 8.06 -52.48 -0.42 2.74 16 LS Contribution 414.89 15.07 6.25 6.25 Total: -1.00 -30.47 414.89 -8.94 -39.41 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -8.49 Total: 5.47 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.14 Total: 0.86 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.25 Total: -53.99 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.29 Total: -13.28 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -30.47 -8.94 -39.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230696194.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.567 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds