Wall clock time and date at job start Tue Mar 31 2020 18:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99517 * 2 1 4 4 C 1.53007 * 109.46716 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46705 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.46711 * 179.97438 * 5 4 3 7 7 O 1.21274 * 119.99782 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99435 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99503 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47003 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47277 * 180.02562 * 10 9 8 12 12 N 1.46491 * 109.47375 * 179.97438 * 11 10 9 13 13 C 1.36942 * 119.99847 * 90.00151 * 12 11 10 14 14 H 1.07994 * 119.99881 * 319.91739 * 13 12 11 15 15 C 1.38811 * 120.00112 * 139.92146 * 13 12 11 16 16 N 1.31619 * 119.99950 * 340.16467 * 15 13 12 17 17 Si 1.86799 * 120.00208 * 160.16409 * 15 13 12 18 18 H 1.48500 * 109.46882 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47275 * 119.99843 * 17 15 13 20 20 H 1.48502 * 109.47201 * 239.99985 * 17 15 13 21 21 C 1.46503 * 120.00305 * 269.99948 * 12 11 10 22 22 C 1.50700 * 109.46916 * 88.01674 * 21 12 11 23 23 C 1.38672 * 120.42020 * 263.14357 * 22 21 12 24 24 C 1.38630 * 118.42395 * 179.78508 * 23 22 21 25 25 C 1.38225 * 119.15686 * 0.51172 * 24 23 22 26 26 N 1.31856 * 120.76775 * 359.72464 * 25 24 23 27 27 C 1.31887 * 121.72096 * 0.02562 * 26 25 24 28 28 H 1.09006 * 109.47008 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47578 * 299.99831 * 1 2 3 30 30 H 1.09000 * 109.47136 * 60.00222 * 1 2 3 31 31 H 1.09003 * 109.47112 * 60.00239 * 3 2 1 32 32 H 1.08995 * 109.47458 * 299.99600 * 3 2 1 33 33 H 1.08996 * 109.47242 * 59.99903 * 4 3 2 34 34 H 1.09004 * 109.46713 * 299.99832 * 4 3 2 35 35 H 1.08996 * 109.47608 * 59.99810 * 5 4 3 36 36 H 1.08995 * 109.47205 * 299.99482 * 5 4 3 37 37 H 0.96998 * 120.00383 * 0.02562 * 8 6 5 38 38 H 1.09003 * 109.46932 * 60.00387 * 9 8 6 39 39 H 1.08999 * 109.47058 * 300.00671 * 9 8 6 40 40 H 1.08996 * 109.47431 * 59.99940 * 10 9 8 41 41 H 1.09004 * 109.47093 * 299.99521 * 10 9 8 42 42 H 1.08999 * 109.46857 * 300.00422 * 11 10 9 43 43 H 1.09003 * 109.46859 * 59.99971 * 11 10 9 44 44 H 0.96997 * 120.00327 * 180.02562 * 16 15 13 45 45 H 1.08996 * 109.47217 * 208.01697 * 21 12 11 46 46 H 1.08998 * 109.46980 * 328.01998 * 21 12 11 47 47 H 1.08008 * 120.78939 * 0.02562 * 23 22 21 48 48 H 1.07999 * 120.41697 * 180.21897 * 24 23 22 49 49 H 1.07998 * 119.61790 * 179.75120 * 25 24 23 50 50 H 1.08007 * 119.61411 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1576 2.5825 0.0013 6 6 5.6600 2.4636 0.0026 7 8 6.1815 1.3687 0.0034 8 7 6.4238 3.5740 0.0028 9 6 7.8843 3.4583 0.0046 10 6 8.5065 4.8560 0.0051 11 6 10.0318 4.7353 0.0063 12 7 10.6276 6.0736 0.0062 13 6 10.9051 6.6996 1.1921 14 1 10.2121 6.6254 2.0170 15 6 12.0772 7.4297 1.3339 16 7 13.0872 7.2180 0.5169 17 14 12.2211 8.7124 2.6842 18 1 10.9562 8.7576 3.4608 19 1 13.3447 8.3564 3.5875 20 1 12.4766 10.0435 2.0773 21 6 10.9265 6.7423 -1.2626 22 6 9.7145 7.5102 -1.7234 23 6 8.8413 6.9557 -2.6470 24 6 7.7370 7.6966 -3.0387 25 6 7.5502 8.9589 -2.5074 26 7 8.4040 9.4566 -1.6345 27 6 9.4624 8.7782 -1.2356 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8574 0.6437 -0.8891 34 1 3.8566 0.6440 0.8909 35 1 3.8356 3.1233 0.8912 36 1 3.8364 3.1236 -0.8887 37 1 6.0066 4.4497 0.0025 38 1 8.2069 2.9169 -0.8847 39 1 8.2048 2.9179 0.8952 40 1 8.1838 5.3971 0.8945 41 1 8.1860 5.3968 -0.8854 42 1 10.3526 4.1944 0.8965 43 1 10.3541 4.1944 -0.8834 44 1 13.9064 7.7279 0.6162 45 1 11.7608 7.4298 -1.1232 46 1 11.1912 5.9970 -2.0125 47 1 9.0153 5.9683 -3.0488 48 1 7.0343 7.2945 -3.7535 49 1 6.6946 9.5442 -2.8103 50 1 10.1400 9.2190 -0.5193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230696194.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:50 Heat of formation + Delta-G solvation = -65.365934 kcal Electronic energy + Delta-G solvation = -28401.505588 eV Core-core repulsion = 24428.050469 eV Total energy + Delta-G solvation = -3973.455119 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.92429 -40.74287 -38.85816 -38.03276 -36.27356 -34.62383 -33.93839 -33.44630 -32.56089 -31.27984 -28.93284 -27.58714 -27.17331 -26.15416 -24.25966 -24.09804 -22.83413 -22.49152 -22.03179 -21.07069 -18.72757 -18.16143 -17.79149 -17.35362 -17.32222 -17.16432 -16.78642 -16.65838 -16.50179 -15.95750 -15.80698 -15.73931 -15.25791 -15.15490 -14.57071 -14.47976 -14.39105 -14.23874 -13.79609 -13.53767 -13.44809 -13.05722 -13.00162 -12.89922 -12.80326 -12.61817 -12.59129 -12.44601 -12.31957 -11.98240 -11.95982 -11.87554 -11.82455 -11.55750 -10.95285 -10.59135 -10.57673 -10.46646 -10.20936 -10.06520 -9.68417 -8.56657 -7.87043 -5.50650 0.40661 0.54211 1.42016 1.47918 1.55213 1.67267 2.17682 2.48146 2.93128 3.03334 3.24480 3.72945 3.74019 3.75308 4.00293 4.11197 4.13955 4.17282 4.20852 4.27747 4.32980 4.37141 4.46184 4.49176 4.50618 4.53720 4.56908 4.59942 4.67229 4.71974 4.74255 4.85895 4.88023 4.97770 5.06375 5.08039 5.13243 5.25560 5.31165 5.35955 5.45355 5.51248 5.53889 5.69758 5.71382 6.02225 6.27551 6.46621 6.59530 7.14936 7.22666 7.28774 7.80578 8.35018 9.09577 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.002308 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.160359 B =12129.433245 C =13276.423291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.062 3.938 4 C -0.102 4.102 5 C -0.126 4.126 6 C 0.505 3.495 7 O -0.592 6.592 8 N -0.718 5.718 9 C 0.131 3.869 10 C -0.127 4.127 11 C 0.149 3.851 12 N -0.585 5.585 13 C -0.259 4.259 14 H 0.050 0.950 15 C -0.024 4.024 16 N -0.911 5.911 17 Si 0.943 3.057 18 H -0.271 1.271 19 H -0.291 1.291 20 H -0.288 1.288 21 C 0.188 3.812 22 C -0.130 4.130 23 C -0.080 4.080 24 C -0.161 4.161 25 C 0.070 3.930 26 N -0.514 5.514 27 C 0.090 3.910 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.414 0.586 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.037 0.963 43 H 0.048 0.952 44 H 0.253 0.747 45 H 0.066 0.934 46 H 0.043 0.957 47 H 0.142 0.858 48 H 0.167 0.833 49 H 0.179 0.821 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.079 -5.216 -6.648 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.014 4.014 4 C -0.140 4.140 5 C -0.166 4.166 6 C 0.293 3.707 7 O -0.473 6.473 8 N -0.370 5.370 9 C 0.006 3.994 10 C -0.167 4.167 11 C 0.023 3.977 12 N -0.305 5.305 13 C -0.390 4.390 14 H 0.068 0.932 15 C -0.222 4.222 16 N -0.554 5.554 17 Si 0.772 3.228 18 H -0.195 1.195 19 H -0.218 1.218 20 H -0.214 1.214 21 C 0.061 3.939 22 C -0.135 4.135 23 C -0.106 4.106 24 C -0.181 4.181 25 C -0.088 4.088 26 N -0.223 5.223 27 C -0.066 4.066 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.250 0.750 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.062 0.938 47 H 0.160 0.840 48 H 0.185 0.815 49 H 0.196 0.804 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -22.520 -5.264 -6.279 23.964 hybrid contribution 0.711 0.460 0.711 1.106 sum -21.809 -4.804 -5.568 23.016 Atomic orbital electron populations 1.22919 0.79370 1.03686 1.01059 1.87850 1.21634 1.29369 1.95677 1.22606 0.92600 0.84360 1.01850 1.21157 0.93656 0.96355 1.02860 1.21552 0.88690 0.99007 1.07334 1.21333 0.91119 0.83490 0.74719 1.90701 1.76381 1.28500 1.51686 1.46022 1.06774 1.09598 1.74604 1.21144 0.79678 0.97407 1.01178 1.22178 0.97746 0.94734 1.02020 1.20844 0.91130 0.86409 0.99337 1.43782 1.71795 1.13553 1.01336 1.19068 0.99964 1.27737 0.92228 0.93250 1.25765 0.94452 1.02492 0.99512 1.70096 1.03230 1.41095 1.40940 0.85602 0.77602 0.79785 0.79846 1.19548 1.21764 1.21433 1.19697 0.92763 0.95052 0.86370 1.21905 1.00197 0.95417 0.95949 1.21670 0.93567 1.00211 0.95190 1.22385 0.98545 0.95531 1.01604 1.23193 0.97928 0.94544 0.93101 1.67613 1.03884 1.37648 1.13139 1.22307 0.94384 0.92381 0.97520 0.89031 0.92988 0.92847 0.91596 0.91299 0.92355 0.92685 0.86062 0.85573 0.74959 0.92006 0.93208 0.93228 0.91051 0.94475 0.93413 0.93743 0.91622 0.93820 0.83983 0.81529 0.80405 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.52 16 2 O -0.43 -7.86 10.70 -148.98 -1.59 -9.45 16 3 C 0.06 0.83 5.94 71.98 0.43 1.26 16 4 C -0.10 -1.82 4.87 30.60 0.15 -1.67 16 5 C -0.13 -1.69 5.70 29.85 0.17 -1.52 16 6 C 0.51 11.75 7.83 87.66 0.69 12.44 16 7 O -0.59 -19.76 15.98 -3.01 -0.05 -19.81 16 8 N -0.72 -15.40 5.56 -463.06 -2.57 -17.97 16 9 C 0.13 3.53 5.67 86.38 0.49 4.02 16 10 C -0.13 -3.82 5.62 30.59 0.17 -3.65 16 11 C 0.15 5.63 5.71 86.38 0.49 6.13 16 12 N -0.59 -26.48 2.39 -706.36 -1.69 -28.17 16 13 C -0.26 -13.32 9.44 84.03 0.79 -12.52 16 14 H 0.05 2.60 7.90 -2.91 -0.02 2.57 16 15 C -0.02 -1.25 4.95 84.86 0.42 -0.83 16 16 N -0.91 -50.64 11.59 21.65 0.25 -50.39 16 17 Si 0.94 43.34 29.60 68.60 2.03 45.37 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 19 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 20 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 21 C 0.19 8.06 5.47 85.63 0.47 8.53 16 22 C -0.13 -4.77 5.17 -19.77 -0.10 -4.87 16 23 C -0.08 -2.23 8.00 22.47 0.18 -2.05 16 24 C -0.16 -3.66 10.11 22.36 0.23 -3.43 16 25 C 0.07 1.83 11.18 84.69 0.95 2.78 16 26 N -0.51 -18.12 10.36 -195.84 -2.03 -20.15 16 27 C 0.09 3.58 10.89 84.67 0.92 4.50 16 28 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 34 H 0.05 1.22 8.10 -2.38 -0.02 1.21 16 35 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.41 6.57 8.47 -92.71 -0.79 5.79 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 2.05 5.85 -2.38 -0.01 2.03 16 42 H 0.04 1.50 8.04 -2.39 -0.02 1.48 16 43 H 0.05 1.69 7.91 -2.39 -0.02 1.67 16 44 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 45 H 0.07 3.33 5.66 -2.39 -0.01 3.32 16 46 H 0.04 1.76 7.83 -2.39 -0.02 1.74 16 47 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 48 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 49 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 50 H 0.12 5.36 8.06 -2.91 -0.02 5.34 16 Total: -1.00 -70.82 414.89 2.17 -68.65 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.13 Total: 21.29 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 7.69 Total: 10.63 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -6.04 Total: -116.67 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -1.64 Total: -29.26 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -70.82 2.17 -68.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230696194.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.283 kcal (2) G-P(sol) polarization free energy of solvation -70.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds