Wall clock time and date at job start Tue Mar 31 2020 18:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99917 * 2 1 4 4 C 1.52989 * 109.47250 * 270.00107 * 3 2 1 5 5 H 1.09004 * 112.96374 * 287.14495 * 4 3 2 6 6 C 1.53937 * 113.75924 * 155.49586 * 4 3 2 7 7 C 1.53940 * 86.34299 * 221.96187 * 6 4 3 8 8 N 1.47959 * 86.17923 * 23.71915 * 7 6 4 9 9 C 1.46897 * 111.00012 * 222.41583 * 8 7 6 10 10 C 1.50698 * 109.47377 * 269.35835 * 9 8 7 11 11 O 1.21296 * 120.00087 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00357 * 180.02562 * 10 9 8 13 13 C 1.37096 * 120.00358 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99872 * 0.02562 * 13 12 10 15 15 C 1.38952 * 120.00022 * 179.97438 * 13 12 10 16 16 N 1.31411 * 120.00197 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99853 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46789 * 90.00060 * 17 15 13 19 19 H 1.48496 * 109.46912 * 210.00227 * 17 15 13 20 20 H 1.48500 * 109.47019 * 330.00064 * 17 15 13 21 21 C 1.34777 * 119.99795 * 180.02562 * 2 1 3 22 22 O 1.21281 * 119.99908 * 179.97438 * 21 2 1 23 23 C 1.50697 * 119.99987 * 359.97438 * 21 2 1 24 24 C 1.52999 * 109.46954 * 180.02562 * 23 21 2 25 25 H 1.09008 * 110.34736 * 55.83480 * 24 23 21 26 26 C 1.51101 * 110.38693 * 293.54787 * 24 23 21 27 27 C 1.30524 * 111.10394 * 224.75157 * 26 24 23 28 28 C 1.51104 * 111.10723 * 359.97438 * 27 26 24 29 29 C 1.54637 * 104.82203 * 16.38048 * 28 27 26 30 30 H 1.08997 * 109.46783 * 269.99751 * 1 2 3 31 31 H 1.08997 * 109.47089 * 29.99985 * 1 2 3 32 32 H 1.09000 * 109.47223 * 149.99937 * 1 2 3 33 33 H 1.09003 * 109.46930 * 30.00316 * 3 2 1 34 34 H 1.08997 * 109.46572 * 150.00192 * 3 2 1 35 35 H 1.08996 * 113.73333 * 336.31929 * 6 4 3 36 36 H 1.09000 * 113.73293 * 107.49728 * 6 4 3 37 37 H 1.09004 * 113.75704 * 138.03516 * 7 6 4 38 38 H 1.09003 * 113.75990 * 269.40099 * 7 6 4 39 39 H 1.08999 * 109.47145 * 29.36395 * 9 8 7 40 40 H 1.09007 * 109.46959 * 149.36242 * 9 8 7 41 41 H 0.97010 * 120.00196 * 0.02562 * 12 10 9 42 42 H 0.97005 * 119.99847 * 180.02562 * 16 15 13 43 43 H 1.08996 * 109.47077 * 60.00544 * 23 21 2 44 44 H 1.08999 * 109.47264 * 300.00249 * 23 21 2 45 45 H 1.08000 * 124.45055 * 44.77302 * 26 24 23 46 46 H 1.08003 * 124.45101 * 180.02562 * 27 26 24 47 47 H 1.09002 * 110.38900 * 135.24848 * 28 27 26 48 48 H 1.09000 * 110.38594 * 257.51546 * 28 27 26 49 49 H 1.08993 * 111.03790 * 93.45539 * 29 28 27 50 50 H 1.09000 * 111.03618 * 217.39253 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 3.2145 1.1121 -1.9420 6 6 2.6541 3.2284 -1.5997 7 6 1.7731 3.1155 -2.8570 8 7 1.2179 1.8921 -2.2374 9 6 1.0688 0.8201 -3.2306 10 6 -0.3038 0.8946 -3.8481 11 8 -1.0814 1.7563 -3.4958 12 7 -0.6676 0.0038 -4.7918 13 6 -1.9161 0.0719 -5.3539 14 1 -2.6081 0.8397 -5.0408 15 6 -2.2909 -0.8462 -6.3272 16 7 -1.4487 -1.7801 -6.7086 17 14 -3.9920 -0.7529 -7.0937 18 1 -3.9478 0.1241 -8.2912 19 1 -4.4303 -2.1144 -7.4929 20 1 -4.9499 -0.1942 -6.1060 21 6 2.1389 -1.1672 -0.0005 22 8 3.3517 -1.1673 -0.0010 23 6 1.3854 -2.4723 -0.0005 24 6 2.3796 -3.6352 -0.0005 25 1 3.0621 -3.5503 0.8452 26 6 3.1517 -3.6676 -1.2989 27 6 3.2298 -4.8827 -1.7691 28 6 2.5233 -5.8634 -0.8624 29 6 1.6294 -4.9884 0.0468 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6084 2.0284 0.5139 34 1 3.1499 1.1383 0.5138 35 1 2.2037 3.8160 -0.7998 36 1 3.6849 3.5148 -1.8086 37 1 1.0486 3.9235 -2.9596 38 1 2.3354 2.9282 -3.7719 39 1 1.8238 0.9374 -4.0080 40 1 1.1961 -0.1468 -2.7436 41 1 -0.0459 -0.6857 -5.0733 42 1 -1.7103 -2.4208 -7.3883 43 1 0.7585 -2.5298 -0.8903 44 1 0.7590 -2.5302 0.8896 45 1 3.5828 -2.7994 -1.7752 46 1 3.7340 -5.1520 -2.6855 47 1 1.9122 -6.5500 -1.4483 48 1 3.2471 -6.4167 -0.2640 49 1 0.6254 -4.8930 -0.3667 50 1 1.5968 -5.3848 1.0616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230737834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:33 Heat of formation + Delta-G solvation = -15.545377 kcal Electronic energy + Delta-G solvation = -30241.993649 eV Core-core repulsion = 26270.698911 eV Total energy + Delta-G solvation = -3971.294738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.48164 -39.58130 -38.21164 -37.65090 -35.26966 -33.88736 -31.87464 -31.30207 -30.53704 -29.02873 -28.75803 -26.48270 -25.72165 -25.33812 -23.65542 -23.05690 -20.58685 -19.70136 -19.25527 -19.11709 -18.45829 -17.88054 -16.91276 -16.30432 -16.13803 -15.89006 -15.64663 -15.44433 -15.08092 -14.65205 -14.51141 -14.06065 -13.77378 -13.46505 -13.40324 -13.17526 -12.58239 -12.52268 -12.33511 -12.23564 -12.00011 -11.87154 -11.83962 -11.58564 -11.52294 -11.45652 -11.27615 -11.25607 -11.13648 -11.02977 -10.83502 -10.73026 -10.55725 -10.39475 -10.20404 -9.61537 -9.49207 -8.88750 -8.85300 -8.39019 -8.12174 -7.95095 -6.40674 -3.81624 2.36245 2.72014 3.07191 3.17370 3.25990 3.31493 3.91849 3.98415 4.23367 4.42835 4.57949 4.60329 4.76934 4.85071 4.90193 5.05282 5.17851 5.19817 5.23091 5.29725 5.35914 5.38559 5.48293 5.50174 5.52588 5.54907 5.59304 5.65937 5.71094 5.75569 5.77747 5.83110 5.85354 5.85727 5.91380 6.00575 6.13621 6.14384 6.24193 6.27783 6.31874 6.54132 6.64035 6.68506 6.96112 7.24875 7.49106 7.55402 8.06974 8.26830 8.63111 9.19319 9.56044 10.08348 10.77071 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007864 B = 0.004262 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3559.603006 B = 6567.683662 C = 9188.679696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.606 5.606 3 C 0.139 3.861 4 C 0.008 3.992 5 H 0.078 0.922 6 C -0.137 4.137 7 C 0.010 3.990 8 N -0.439 5.439 9 C 0.014 3.986 10 C 0.448 3.552 11 O -0.576 6.576 12 N -0.567 5.567 13 C -0.298 4.298 14 H 0.102 0.898 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.928 3.072 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.512 3.488 22 O -0.546 6.546 23 C -0.134 4.134 24 C -0.051 4.051 25 H 0.086 0.914 26 C -0.140 4.140 27 C -0.182 4.182 28 C -0.098 4.098 29 C -0.123 4.123 30 H 0.049 0.951 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.390 0.610 42 H 0.271 0.729 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.247 -1.976 13.854 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.338 5.338 3 C 0.016 3.984 4 C -0.102 4.102 5 H 0.096 0.904 6 C -0.175 4.175 7 C -0.119 4.119 8 N -0.162 5.162 9 C -0.118 4.118 10 C 0.233 3.767 11 O -0.459 6.459 12 N -0.205 5.205 13 C -0.427 4.427 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.544 5.544 17 Si 0.755 3.245 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.194 1.194 21 C 0.301 3.699 22 O -0.424 6.424 23 C -0.173 4.173 24 C -0.070 4.070 25 H 0.104 0.896 26 C -0.158 4.158 27 C -0.200 4.200 28 C -0.135 4.135 29 C -0.161 4.161 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.223 0.777 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.110 0.890 45 H 0.142 0.858 46 H 0.139 0.861 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.650 -1.549 14.281 16.768 hybrid contribution 0.218 -0.610 -1.406 1.548 sum 8.869 -2.159 12.876 15.783 Atomic orbital electron populations 1.21949 0.78509 1.05232 1.01135 1.47783 1.07527 1.05572 1.72916 1.21347 0.97351 0.84836 0.94877 1.23934 0.93276 0.96550 0.96470 0.90404 1.23359 0.99981 0.95174 0.99032 1.23837 0.96882 0.95544 0.95639 1.68294 1.29672 1.02378 1.15827 1.22431 0.97430 0.96683 0.95269 1.19681 0.88609 0.84942 0.83465 1.90514 1.53576 1.37637 1.64175 1.41894 1.15387 1.28420 1.34751 1.19670 0.91086 1.14176 1.17783 0.88012 1.25241 0.99631 0.95674 0.97365 1.69617 1.35898 1.17242 1.31600 0.85890 0.81900 0.77360 0.79335 1.20470 1.20950 1.19426 1.20734 0.88040 0.85497 0.75644 1.90660 1.13926 1.87517 1.50248 1.21763 0.99156 0.91949 1.04469 1.20826 0.95477 0.93019 0.97641 0.89596 1.23279 0.98814 0.97726 0.95968 1.23241 1.01822 0.95301 0.99591 1.21318 0.97872 0.97624 0.96710 1.22595 0.99108 0.94506 0.99864 0.93208 0.88541 0.91287 0.90047 0.89809 0.89117 0.91182 0.89077 0.91697 0.92937 0.90132 0.77657 0.91927 0.88448 0.88956 0.85781 0.86084 0.91305 0.91123 0.90703 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 10.04 59.85 0.60 1.52 16 2 N -0.61 -7.73 2.82 -181.57 -0.51 -8.24 16 3 C 0.14 1.68 5.54 -4.05 -0.02 1.66 16 4 C 0.01 0.11 3.55 -66.66 -0.24 -0.13 16 5 H 0.08 1.10 7.93 -51.93 -0.41 0.69 16 6 C -0.14 -1.53 7.84 -25.80 -0.20 -1.73 16 7 C 0.01 0.14 7.95 -2.76 -0.02 0.12 16 8 N -0.44 -7.01 4.37 -232.13 -1.01 -8.02 16 9 C 0.01 0.25 5.28 -4.98 -0.03 0.23 16 10 C 0.45 10.47 7.83 -10.99 -0.09 10.38 16 11 O -0.58 -15.31 16.01 5.54 0.09 -15.23 16 12 N -0.57 -14.33 5.29 -10.96 -0.06 -14.39 16 13 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 14 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 17 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.51 6.95 7.44 -10.99 -0.08 6.87 16 22 O -0.55 -8.75 14.26 5.56 0.08 -8.67 16 23 C -0.13 -1.52 3.68 -27.88 -0.10 -1.63 16 24 C -0.05 -0.59 2.54 -90.63 -0.23 -0.82 16 25 H 0.09 1.04 8.01 -51.92 -0.42 0.62 16 26 C -0.14 -1.83 9.19 -35.70 -0.33 -2.16 16 27 C -0.18 -2.16 10.78 -35.70 -0.38 -2.55 16 28 C -0.10 -0.99 6.80 -26.82 -0.18 -1.17 16 29 C -0.12 -1.20 6.73 -24.92 -0.17 -1.37 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 1.44 7.25 -51.93 -0.38 1.06 16 32 H 0.07 0.86 6.44 -51.93 -0.33 0.52 16 33 H 0.08 0.89 7.84 -51.93 -0.41 0.48 16 34 H 0.08 1.01 7.42 -51.93 -0.39 0.62 16 35 H 0.09 0.93 7.94 -51.93 -0.41 0.51 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.06 0.91 7.48 -51.93 -0.39 0.52 16 39 H 0.05 0.91 7.38 -51.93 -0.38 0.53 16 40 H 0.08 1.42 8.08 -51.93 -0.42 1.00 16 41 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.10 1.17 7.40 -51.93 -0.38 0.79 16 44 H 0.09 0.86 8.11 -51.93 -0.42 0.44 16 45 H 0.12 1.81 7.31 -52.49 -0.38 1.43 16 46 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 403.80 15.07 6.09 6.09 Total: -1.00 -31.83 403.80 -9.67 -41.50 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -8.33 Total: 13.49 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.71 Total: 1.34 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.86 Total: -54.45 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.17 Total: -23.90 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.83 -9.67 -41.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230737834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.957 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds