Wall clock time and date at job start Tue Mar 31 2020 18:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99917 * 2 1 4 4 C 1.52989 * 109.47250 * 270.00107 * 3 2 1 5 5 H 1.09004 * 112.96374 * 287.14495 * 4 3 2 6 6 C 1.53937 * 113.75924 * 155.49586 * 4 3 2 7 7 C 1.53940 * 86.34299 * 221.96187 * 6 4 3 8 8 N 1.47959 * 86.17923 * 23.71915 * 7 6 4 9 9 C 1.46897 * 111.00012 * 222.41583 * 8 7 6 10 10 C 1.50698 * 109.47377 * 269.35835 * 9 8 7 11 11 O 1.21296 * 120.00087 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00357 * 180.02562 * 10 9 8 13 13 C 1.37096 * 120.00358 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99872 * 0.02562 * 13 12 10 15 15 C 1.38952 * 120.00022 * 179.97438 * 13 12 10 16 16 N 1.31411 * 120.00197 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99853 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46789 * 90.00060 * 17 15 13 19 19 H 1.48496 * 109.46912 * 210.00227 * 17 15 13 20 20 H 1.48500 * 109.47019 * 330.00064 * 17 15 13 21 21 C 1.34777 * 119.99795 * 180.02562 * 2 1 3 22 22 O 1.21281 * 119.99908 * 179.97438 * 21 2 1 23 23 C 1.50697 * 119.99987 * 359.97438 * 21 2 1 24 24 C 1.52999 * 109.46954 * 180.02562 * 23 21 2 25 25 H 1.09008 * 110.34736 * 55.83480 * 24 23 21 26 26 C 1.51101 * 110.38693 * 293.54787 * 24 23 21 27 27 C 1.30524 * 111.10394 * 224.75157 * 26 24 23 28 28 C 1.51104 * 111.10723 * 359.97438 * 27 26 24 29 29 C 1.54637 * 104.82203 * 16.38048 * 28 27 26 30 30 H 1.08997 * 109.46783 * 269.99751 * 1 2 3 31 31 H 1.08997 * 109.47089 * 29.99985 * 1 2 3 32 32 H 1.09000 * 109.47223 * 149.99937 * 1 2 3 33 33 H 1.09003 * 109.46930 * 30.00316 * 3 2 1 34 34 H 1.08997 * 109.46572 * 150.00192 * 3 2 1 35 35 H 1.08996 * 113.73333 * 336.31929 * 6 4 3 36 36 H 1.09000 * 113.73293 * 107.49728 * 6 4 3 37 37 H 1.09004 * 113.75704 * 138.03516 * 7 6 4 38 38 H 1.09003 * 113.75990 * 269.40099 * 7 6 4 39 39 H 1.08999 * 109.47145 * 29.36395 * 9 8 7 40 40 H 1.09007 * 109.46959 * 149.36242 * 9 8 7 41 41 H 0.97010 * 120.00196 * 0.02562 * 12 10 9 42 42 H 0.97005 * 119.99847 * 180.02562 * 16 15 13 43 43 H 1.08996 * 109.47077 * 60.00544 * 23 21 2 44 44 H 1.08999 * 109.47264 * 300.00249 * 23 21 2 45 45 H 1.08000 * 124.45055 * 44.77302 * 26 24 23 46 46 H 1.08003 * 124.45101 * 180.02562 * 27 26 24 47 47 H 1.09002 * 110.38900 * 135.24848 * 28 27 26 48 48 H 1.09000 * 110.38594 * 257.51546 * 28 27 26 49 49 H 1.08993 * 111.03790 * 93.45539 * 29 28 27 50 50 H 1.09000 * 111.03618 * 217.39253 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 3.2145 1.1121 -1.9420 6 6 2.6541 3.2284 -1.5997 7 6 1.7731 3.1155 -2.8570 8 7 1.2179 1.8921 -2.2374 9 6 1.0688 0.8201 -3.2306 10 6 -0.3038 0.8946 -3.8481 11 8 -1.0814 1.7563 -3.4958 12 7 -0.6676 0.0038 -4.7918 13 6 -1.9161 0.0719 -5.3539 14 1 -2.6081 0.8397 -5.0408 15 6 -2.2909 -0.8462 -6.3272 16 7 -1.4487 -1.7801 -6.7086 17 14 -3.9920 -0.7529 -7.0937 18 1 -3.9478 0.1241 -8.2912 19 1 -4.4303 -2.1144 -7.4929 20 1 -4.9499 -0.1942 -6.1060 21 6 2.1389 -1.1672 -0.0005 22 8 3.3517 -1.1673 -0.0010 23 6 1.3854 -2.4723 -0.0005 24 6 2.3796 -3.6352 -0.0005 25 1 3.0621 -3.5503 0.8452 26 6 3.1517 -3.6676 -1.2989 27 6 3.2298 -4.8827 -1.7691 28 6 2.5233 -5.8634 -0.8624 29 6 1.6294 -4.9884 0.0468 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6084 2.0284 0.5139 34 1 3.1499 1.1383 0.5138 35 1 2.2037 3.8160 -0.7998 36 1 3.6849 3.5148 -1.8086 37 1 1.0486 3.9235 -2.9596 38 1 2.3354 2.9282 -3.7719 39 1 1.8238 0.9374 -4.0080 40 1 1.1961 -0.1468 -2.7436 41 1 -0.0459 -0.6857 -5.0733 42 1 -1.7103 -2.4208 -7.3883 43 1 0.7585 -2.5298 -0.8903 44 1 0.7590 -2.5302 0.8896 45 1 3.5828 -2.7994 -1.7752 46 1 3.7340 -5.1520 -2.6855 47 1 1.9122 -6.5500 -1.4483 48 1 3.2471 -6.4167 -0.2640 49 1 0.6254 -4.8930 -0.3667 50 1 1.5968 -5.3848 1.0616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230737834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:32 Heat of formation + Delta-G solvation = -35.473903 kcal Electronic energy + Delta-G solvation = -30242.857814 eV Core-core repulsion = 26270.698911 eV Total energy + Delta-G solvation = -3972.158903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.60998 -40.73370 -39.58227 -39.05700 -36.35225 -35.91662 -33.31769 -32.82959 -31.92148 -30.00795 -29.70289 -27.51217 -27.47312 -26.30386 -25.30184 -24.07645 -21.43201 -21.09431 -20.74682 -20.17157 -19.90370 -19.43704 -17.98359 -17.64907 -17.32754 -17.22076 -16.74585 -16.67638 -16.44246 -16.18429 -15.72326 -15.58243 -15.35204 -14.83996 -14.49501 -14.22256 -14.11336 -13.74772 -13.52926 -13.50918 -13.32310 -12.95201 -12.93361 -12.78088 -12.69254 -12.67133 -12.47731 -12.42929 -12.34197 -12.13604 -12.07437 -12.00006 -11.89766 -11.77707 -11.64246 -11.48892 -10.69125 -10.41333 -10.00833 -9.82974 -9.78447 -9.39833 -8.45698 -5.94716 1.37655 1.39361 1.41465 1.54199 1.66702 2.04666 2.06973 2.28519 2.77309 3.19698 3.37208 3.49824 3.61382 3.72431 3.79244 3.90659 3.98950 4.12740 4.18949 4.23198 4.30954 4.32536 4.35024 4.44204 4.46223 4.49910 4.57932 4.65174 4.67311 4.68620 4.74788 4.81502 4.86992 4.96025 4.96887 5.00276 5.09310 5.10649 5.25505 5.27535 5.39190 5.41637 5.42162 5.57631 5.70002 5.91296 5.98872 6.08591 6.45799 6.60051 7.13312 7.22305 7.55899 8.11575 8.71765 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007864 B = 0.004262 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3559.603006 B = 6567.683662 C = 9188.679696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.606 5.606 3 C 0.139 3.861 4 C 0.012 3.988 5 H 0.068 0.932 6 C -0.112 4.112 7 C -0.001 4.001 8 N -0.455 5.455 9 C 0.032 3.968 10 C 0.450 3.550 11 O -0.609 6.609 12 N -0.577 5.577 13 C -0.329 4.329 14 H 0.080 0.920 15 C -0.013 4.013 16 N -0.922 5.922 17 Si 0.991 3.009 18 H -0.273 1.273 19 H -0.271 1.271 20 H -0.270 1.270 21 C 0.508 3.492 22 O -0.574 6.574 23 C -0.129 4.129 24 C -0.048 4.048 25 H 0.080 0.920 26 C -0.166 4.166 27 C -0.180 4.180 28 C -0.099 4.099 29 C -0.118 4.118 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.392 0.608 42 H 0.277 0.723 43 H 0.089 0.911 44 H 0.118 0.882 45 H 0.100 0.900 46 H 0.124 0.876 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.134 -2.522 14.932 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.337 5.337 3 C 0.015 3.985 4 C -0.098 4.098 5 H 0.086 0.914 6 C -0.151 4.151 7 C -0.130 4.130 8 N -0.178 5.178 9 C -0.100 4.100 10 C 0.237 3.763 11 O -0.494 6.494 12 N -0.214 5.214 13 C -0.458 4.458 14 H 0.098 0.902 15 C -0.212 4.212 16 N -0.564 5.564 17 Si 0.815 3.185 18 H -0.198 1.198 19 H -0.196 1.196 20 H -0.195 1.195 21 C 0.298 3.702 22 O -0.454 6.454 23 C -0.169 4.169 24 C -0.066 4.066 25 H 0.098 0.902 26 C -0.184 4.184 27 C -0.198 4.198 28 C -0.136 4.136 29 C -0.155 4.155 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.225 0.775 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.136 0.864 45 H 0.118 0.882 46 H 0.142 0.858 47 H 0.095 0.905 48 H 0.103 0.897 49 H 0.093 0.907 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.550 -2.092 15.363 17.706 hybrid contribution 0.302 -0.407 -1.751 1.823 sum 8.852 -2.499 13.612 16.428 Atomic orbital electron populations 1.21894 0.78186 1.03735 1.02439 1.47860 1.07713 1.05756 1.72376 1.21427 0.97791 0.84950 0.94282 1.23947 0.91484 0.98047 0.96340 0.91441 1.23273 1.00767 0.93625 0.97390 1.23922 0.97316 0.94423 0.97322 1.68309 1.31756 1.02142 1.15617 1.22206 0.93983 0.97953 0.95855 1.20527 0.90093 0.83457 0.82264 1.90482 1.55220 1.38747 1.64973 1.41971 1.14961 1.29042 1.35447 1.19640 0.92046 1.14744 1.19409 0.90187 1.26023 1.03197 0.94862 0.97130 1.69688 1.37391 1.17485 1.31796 0.84949 0.77344 0.77866 0.78331 1.19827 1.19625 1.19510 1.21100 0.87813 0.86268 0.75038 1.90645 1.15164 1.87932 1.51655 1.21776 0.99058 0.90843 1.05198 1.20804 0.95357 0.94104 0.96379 0.90223 1.23280 1.00309 0.97424 0.97354 1.23528 1.01025 0.95509 0.99767 1.21380 0.98188 0.97359 0.96632 1.22611 0.98660 0.93164 1.01069 0.90450 0.91087 0.91660 0.88519 0.89493 0.87589 0.88758 0.90423 0.91568 0.92062 0.89761 0.77508 0.91407 0.89229 0.86437 0.88184 0.85789 0.90496 0.89702 0.90652 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.91 10.04 127.77 1.28 3.19 16 2 N -0.61 -14.93 2.82 -846.77 -2.39 -17.32 16 3 C 0.14 3.15 5.54 86.37 0.48 3.63 16 4 C 0.01 0.30 3.55 45.01 0.16 0.46 16 5 H 0.07 1.86 7.93 -2.38 -0.02 1.84 16 6 C -0.11 -2.27 7.84 31.24 0.25 -2.02 16 7 C 0.00 -0.03 7.95 86.41 0.69 0.66 16 8 N -0.46 -14.41 4.37 -888.33 -3.88 -18.29 16 9 C 0.03 1.18 5.28 85.56 0.45 1.63 16 10 C 0.45 21.55 7.83 87.66 0.69 22.24 16 11 O -0.61 -33.30 16.01 -3.08 -0.05 -33.35 16 12 N -0.58 -29.94 5.29 -306.99 -1.62 -31.56 16 13 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 14 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 15 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 16 N -0.92 -50.14 13.05 21.66 0.28 -49.85 16 17 Si 0.99 42.79 29.55 68.60 2.03 44.81 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 21 C 0.51 13.56 7.44 87.66 0.65 14.21 16 22 O -0.57 -18.46 14.26 -3.03 -0.04 -18.51 16 23 C -0.13 -2.84 3.68 29.85 0.11 -2.73 16 24 C -0.05 -1.07 2.54 -10.80 -0.03 -1.10 16 25 H 0.08 1.87 8.01 -2.38 -0.02 1.85 16 26 C -0.17 -4.40 9.19 26.26 0.24 -4.16 16 27 C -0.18 -4.24 10.78 26.27 0.28 -3.95 16 28 C -0.10 -1.82 6.80 30.53 0.21 -1.61 16 29 C -0.12 -2.07 6.73 31.77 0.21 -1.86 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 2.10 7.25 -2.39 -0.02 2.08 16 32 H 0.06 1.59 6.44 -2.39 -0.02 1.57 16 33 H 0.10 1.91 7.84 -2.39 -0.02 1.89 16 34 H 0.09 1.97 7.42 -2.39 -0.02 1.95 16 35 H 0.11 1.86 7.94 -2.39 -0.02 1.84 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 37 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.07 1.83 7.48 -2.39 -0.02 1.81 16 39 H 0.06 2.14 7.38 -2.39 -0.02 2.12 16 40 H 0.08 3.02 8.08 -2.38 -0.02 3.00 16 41 H 0.39 19.79 7.90 -92.70 -0.73 19.06 16 42 H 0.28 14.09 8.31 -92.70 -0.77 13.32 16 43 H 0.09 2.14 7.40 -2.39 -0.02 2.12 16 44 H 0.12 1.95 8.11 -2.39 -0.02 1.93 16 45 H 0.10 3.10 7.31 -2.91 -0.02 3.08 16 46 H 0.12 2.73 8.06 -2.91 -0.02 2.70 16 47 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.07 1.33 7.92 -2.39 -0.02 1.31 16 50 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -69.68 403.80 1.47 -68.21 By element: Atomic # 1 Polarization: 45.08 SS G_CDS: 0.20 Total: 45.28 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 6.95 Total: 10.57 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -7.61 Total: -117.02 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -0.09 Total: -51.86 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -69.68 1.47 -68.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230737834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.737 kcal (2) G-P(sol) polarization free energy of solvation -69.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds