Wall clock time and date at job start Tue Mar 31 2020 18:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00195 * 2 1 4 4 C 1.53000 * 109.47070 * 269.99902 * 3 2 1 5 5 H 1.09001 * 112.74341 * 75.76995 * 4 3 2 6 6 C 1.53509 * 113.47874 * 206.61831 * 4 3 2 7 7 C 1.53510 * 83.57641 * 140.79172 * 6 4 3 8 8 N 1.47474 * 87.93271 * 333.97375 * 7 6 4 9 9 C 1.46906 * 110.99780 * 138.70118 * 8 7 6 10 10 C 1.50696 * 109.46656 * 74.03382 * 9 8 7 11 11 O 1.21296 * 120.00318 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99999 * 180.02562 * 10 9 8 13 13 C 1.37092 * 120.00490 * 179.97438 * 12 10 9 14 14 H 1.08001 * 119.99437 * 359.97438 * 13 12 10 15 15 C 1.38950 * 120.00351 * 180.02562 * 13 12 10 16 16 N 1.31410 * 119.99644 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00133 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47233 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47349 * 119.99505 * 17 15 13 20 20 H 1.48498 * 109.47132 * 239.99686 * 17 15 13 21 21 C 1.34781 * 120.00182 * 180.02562 * 2 1 3 22 22 O 1.21284 * 119.99982 * 180.02562 * 21 2 1 23 23 C 1.50699 * 119.99787 * 359.97438 * 21 2 1 24 24 C 1.53004 * 109.46976 * 180.02562 * 23 21 2 25 25 H 1.09002 * 110.34625 * 305.70335 * 24 23 21 26 26 C 1.51098 * 110.38709 * 67.99127 * 24 23 21 27 27 C 1.30529 * 111.10523 * 135.35975 * 26 24 23 28 28 C 1.51096 * 111.10415 * 0.02562 * 27 26 24 29 29 C 1.54632 * 104.72551 * 343.56013 * 28 27 26 30 30 H 1.08999 * 109.47200 * 269.99594 * 1 2 3 31 31 H 1.08996 * 109.47072 * 30.00466 * 1 2 3 32 32 H 1.09005 * 109.46901 * 150.00093 * 1 2 3 33 33 H 1.08996 * 109.46927 * 29.99614 * 3 2 1 34 34 H 1.09003 * 109.47227 * 150.00240 * 3 2 1 35 35 H 1.09009 * 114.16891 * 254.43904 * 6 4 3 36 36 H 1.08996 * 114.16902 * 27.13935 * 6 4 3 37 37 H 1.09003 * 113.47679 * 219.20737 * 7 6 4 38 38 H 1.09003 * 113.53155 * 88.75252 * 7 6 4 39 39 H 1.09001 * 109.46626 * 194.03052 * 9 8 7 40 40 H 1.08998 * 109.47419 * 314.03229 * 9 8 7 41 41 H 0.97005 * 119.99675 * 359.97438 * 12 10 9 42 42 H 0.97005 * 119.99942 * 179.97438 * 16 15 13 43 43 H 1.08996 * 109.46865 * 60.00528 * 23 21 2 44 44 H 1.09000 * 109.47246 * 300.00226 * 23 21 2 45 45 H 1.08002 * 124.44907 * 315.38240 * 26 24 23 46 46 H 1.08003 * 124.44611 * 180.02562 * 27 26 24 47 47 H 1.09001 * 110.38757 * 102.37471 * 28 27 26 48 48 H 1.08999 * 110.38880 * 224.75070 * 28 27 26 49 49 H 1.08999 * 111.03953 * 266.60420 * 29 28 27 50 50 H 1.09002 * 111.03724 * 142.66545 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5624 2.1175 -1.9222 6 6 3.6942 2.5992 -1.5995 7 6 3.8977 1.7906 -2.8884 8 7 3.1444 0.6924 -2.2551 9 6 2.2219 0.0665 -3.2118 10 6 3.0036 -0.7810 -4.1822 11 8 4.2104 -0.8559 -4.0865 12 7 2.3618 -1.4551 -5.1571 13 6 3.0728 -2.2257 -6.0402 14 1 4.1474 -2.2923 -5.9550 15 6 2.4112 -2.9201 -7.0456 16 7 1.1038 -2.8385 -7.1495 17 14 3.3801 -3.9707 -8.2484 18 1 4.8261 -3.8953 -7.9184 19 1 2.9233 -5.3805 -8.1539 20 1 3.1614 -3.4711 -9.6296 21 6 2.1389 -1.1672 -0.0005 22 8 3.3517 -1.1672 -0.0001 23 6 1.3854 -2.4723 -0.0005 24 6 2.3797 -3.6352 -0.0005 25 1 3.0793 -3.5357 -0.8304 26 6 3.1252 -3.6904 1.3126 27 6 3.1959 -4.9139 1.7619 28 6 2.5100 -5.8787 0.8230 29 6 1.6329 -4.9865 -0.0857 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6084 2.0283 0.5138 34 1 3.1500 1.1384 0.5138 35 1 3.4706 3.6533 -1.7645 36 1 4.4607 2.4330 -0.8426 37 1 4.9409 1.5441 -3.0862 38 1 3.3944 2.2192 -3.7551 39 1 1.5103 -0.5598 -2.6738 40 1 1.6837 0.8413 -3.7578 41 1 1.3966 -1.3949 -5.2338 42 1 0.6419 -3.3230 -7.8516 43 1 0.7585 -2.5298 -0.8903 44 1 0.7591 -2.5302 0.8897 45 1 3.5441 -2.8304 1.8139 46 1 3.6811 -5.1991 2.6837 47 1 3.2469 -6.4184 0.2281 48 1 1.8883 -6.5769 1.3835 49 1 0.6211 -4.8995 0.3103 50 1 1.6200 -5.3628 -1.1086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230737835.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:36 Heat of formation + Delta-G solvation = -8.908670 kcal Electronic energy + Delta-G solvation = -30596.856851 eV Core-core repulsion = 26625.849903 eV Total energy + Delta-G solvation = -3971.006948 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.49135 -39.46666 -38.09180 -37.57202 -35.21164 -33.84909 -31.73673 -31.25945 -30.48524 -28.95206 -28.68196 -26.56269 -25.70828 -25.19398 -23.63514 -22.85688 -20.43565 -19.54145 -19.24469 -19.12067 -18.35958 -17.84161 -16.78848 -16.21289 -16.13750 -15.68469 -15.61308 -15.49852 -14.91296 -14.51787 -14.38593 -13.95925 -13.73542 -13.52708 -13.28205 -13.07471 -12.61433 -12.52385 -12.33972 -12.19966 -11.91025 -11.74983 -11.67193 -11.65225 -11.49607 -11.42942 -11.22235 -11.13574 -11.03713 -10.95445 -10.72241 -10.61121 -10.36265 -10.30931 -10.17560 -9.46212 -9.33470 -8.76927 -8.72183 -8.28313 -8.11548 -7.90661 -6.37636 -3.77605 2.42939 3.00602 3.14414 3.18752 3.28891 3.36924 3.96776 4.12317 4.31135 4.59278 4.61712 4.72718 4.88936 4.91297 4.98002 5.05936 5.10027 5.18045 5.27135 5.29166 5.33619 5.41000 5.46963 5.49395 5.55476 5.57524 5.60797 5.67231 5.74330 5.77208 5.83059 5.88986 5.92543 5.95734 6.00357 6.08445 6.18475 6.27893 6.34499 6.40625 6.45620 6.60105 6.70341 6.81626 7.04329 7.40152 7.58521 7.59548 8.11368 8.56399 8.67427 9.23645 9.59624 10.12877 10.80556 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007906 B = 0.004596 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3540.574605 B = 6090.593031 C = 8524.621293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.622 5.622 3 C 0.138 3.862 4 C 0.001 3.999 5 H 0.071 0.929 6 C -0.137 4.137 7 C 0.010 3.990 8 N -0.414 5.414 9 C 0.015 3.985 10 C 0.448 3.552 11 O -0.571 6.571 12 N -0.569 5.569 13 C -0.293 4.293 14 H 0.102 0.898 15 C 0.021 3.979 16 N -0.905 5.905 17 Si 0.927 3.073 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.514 3.486 22 O -0.499 6.499 23 C -0.129 4.129 24 C -0.055 4.055 25 H 0.096 0.904 26 C -0.133 4.133 27 C -0.189 4.189 28 C -0.097 4.097 29 C -0.122 4.122 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.390 0.610 42 H 0.269 0.731 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.486 5.346 17.169 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.358 5.358 3 C 0.015 3.985 4 C -0.110 4.110 5 H 0.089 0.911 6 C -0.176 4.176 7 C -0.119 4.119 8 N -0.136 5.136 9 C -0.117 4.117 10 C 0.233 3.767 11 O -0.454 6.454 12 N -0.206 5.206 13 C -0.423 4.423 14 H 0.120 0.880 15 C -0.180 4.180 16 N -0.547 5.547 17 Si 0.754 3.246 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.301 3.699 22 O -0.372 6.372 23 C -0.169 4.169 24 C -0.074 4.074 25 H 0.114 0.886 26 C -0.151 4.151 27 C -0.207 4.207 28 C -0.134 4.134 29 C -0.160 4.160 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.223 0.777 42 H 0.079 0.921 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.140 0.860 46 H 0.136 0.864 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.783 4.578 17.391 18.609 hybrid contribution -1.009 0.155 -1.346 1.689 sum -5.793 4.732 16.045 17.703 Atomic orbital electron populations 1.21751 0.80285 1.03135 1.01295 1.47752 1.06231 1.06149 1.75675 1.21361 0.97720 0.84402 0.95021 1.23915 0.96713 0.93795 0.96592 0.91101 1.23177 0.97519 0.97621 0.99257 1.23577 1.01997 0.91188 0.95128 1.68951 1.14345 1.16706 1.13617 1.22430 0.95728 0.98677 0.94872 1.19691 0.88523 0.84767 0.83757 1.90541 1.14102 1.66620 1.74109 1.41863 1.09608 1.42344 1.26819 1.19729 0.93619 1.22183 1.06782 0.88021 1.25214 0.95737 0.98475 0.98540 1.69620 1.07116 1.43570 1.34371 0.85835 0.79859 0.79222 0.79671 1.19252 1.20767 1.20834 1.20524 0.88328 0.84834 0.76219 1.90750 1.13436 1.86691 1.46302 1.21713 0.99113 0.92558 1.03501 1.20833 0.96013 0.92829 0.97715 0.88618 1.23293 0.98419 0.97497 0.95883 1.23198 1.02494 0.95348 0.99643 1.21311 0.98150 0.97539 0.96434 1.22546 0.98464 0.94607 1.00354 0.92970 0.91435 0.91090 0.90947 0.89410 0.91088 0.88873 0.89262 0.92166 0.90148 0.93480 0.77739 0.92072 0.89083 0.89539 0.85968 0.86380 0.90893 0.91675 0.91221 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.24 59.84 0.61 1.26 16 2 N -0.62 -7.44 2.74 -181.57 -0.50 -7.94 16 3 C 0.14 1.60 5.58 -4.04 -0.02 1.58 16 4 C 0.00 0.01 3.37 -71.44 -0.24 -0.23 16 5 H 0.07 0.83 7.77 -51.93 -0.40 0.43 16 6 C -0.14 -1.69 8.00 -26.20 -0.21 -1.90 16 7 C 0.01 0.17 6.71 -7.55 -0.05 0.12 16 8 N -0.41 -7.38 4.66 -237.96 -1.11 -8.49 16 9 C 0.02 0.29 5.31 -4.97 -0.03 0.26 16 10 C 0.45 11.12 7.62 -10.98 -0.08 11.04 16 11 O -0.57 -16.42 15.34 5.54 0.09 -16.33 16 12 N -0.57 -14.84 5.29 -10.96 -0.06 -14.90 16 13 C -0.29 -8.38 9.68 -14.94 -0.14 -8.53 16 14 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 17 Si 0.93 21.50 29.55 -169.99 -5.02 16.47 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.51 7.65 6.55 -10.98 -0.07 7.58 16 22 O -0.50 -9.56 13.80 5.55 0.08 -9.49 16 23 C -0.13 -1.62 3.67 -27.88 -0.10 -1.72 16 24 C -0.06 -0.79 2.52 -90.72 -0.23 -1.02 16 25 H 0.10 1.74 7.96 -51.93 -0.41 1.33 16 26 C -0.13 -1.84 9.23 -35.70 -0.33 -2.17 16 27 C -0.19 -2.31 10.77 -35.70 -0.38 -2.69 16 28 C -0.10 -1.12 6.81 -26.83 -0.18 -1.30 16 29 C -0.12 -1.48 6.71 -25.02 -0.17 -1.65 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 32 H 0.07 0.56 6.44 -51.93 -0.33 0.23 16 33 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 34 H 0.09 1.18 7.15 -51.93 -0.37 0.81 16 35 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 36 H 0.09 1.16 7.94 -51.93 -0.41 0.75 16 37 H 0.09 1.69 8.13 -51.93 -0.42 1.26 16 38 H 0.06 0.97 7.70 -51.93 -0.40 0.57 16 39 H 0.08 1.45 7.68 -51.93 -0.40 1.05 16 40 H 0.05 0.81 7.56 -51.93 -0.39 0.42 16 41 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.09 1.10 7.40 -51.93 -0.38 0.72 16 44 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 45 H 0.12 1.78 7.44 -52.49 -0.39 1.39 16 46 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 50 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 401.50 15.07 6.05 6.05 Total: -1.00 -34.78 401.50 -9.84 -44.63 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -8.36 Total: 13.01 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.73 Total: 1.11 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.94 Total: -55.45 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: 0.16 Total: -25.82 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.78 -9.84 -44.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230737835.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.717 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds