Wall clock time and date at job start Tue Mar 31 2020 18:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00285 * 2 1 4 4 C 1.52997 * 109.47243 * 270.00594 * 3 2 1 5 5 H 1.08996 * 112.96022 * 74.65968 * 4 3 2 6 6 C 1.53934 * 113.75783 * 206.30899 * 4 3 2 7 7 C 1.53941 * 86.34204 * 138.03265 * 6 4 3 8 8 N 1.47961 * 113.75719 * 303.01508 * 4 3 2 9 9 C 1.46892 * 111.00171 * 108.10122 * 8 4 3 10 10 C 1.50705 * 109.47408 * 170.00109 * 9 8 4 11 11 O 1.21296 * 119.99495 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00070 * 179.97438 * 10 9 8 13 13 C 1.37098 * 119.99729 * 179.97438 * 12 10 9 14 14 H 1.07997 * 120.00521 * 0.02562 * 13 12 10 15 15 C 1.38955 * 120.00058 * 180.02562 * 13 12 10 16 16 N 1.31404 * 120.00396 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99859 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46873 * 89.99966 * 17 15 13 19 19 H 1.48492 * 109.47101 * 210.00204 * 17 15 13 20 20 H 1.48503 * 109.46999 * 330.00199 * 17 15 13 21 21 C 1.34777 * 120.00044 * 180.02562 * 2 1 3 22 22 O 1.21292 * 119.99716 * 179.97438 * 21 2 1 23 23 C 1.50696 * 120.00270 * 359.97438 * 21 2 1 24 24 H 1.08998 * 115.52764 * 34.50022 * 23 21 2 25 25 C 1.52998 * 117.46437 * 179.97438 * 23 21 2 26 26 H 1.08999 * 119.29368 * 355.36290 * 25 23 21 27 27 C 1.54264 * 118.20354 * 201.21326 * 25 23 21 28 28 C 1.54892 * 104.19651 * 272.21420 * 27 25 23 29 29 C 1.54891 * 102.74959 * 37.93955 * 28 27 25 30 30 C 1.53165 * 117.38940 * 249.15445 * 23 21 2 31 31 H 1.08999 * 119.93352 * 3.45573 * 30 23 21 32 32 H 1.09006 * 109.47143 * 269.99869 * 1 2 3 33 33 H 1.08996 * 109.47603 * 30.00038 * 1 2 3 34 34 H 1.09000 * 109.46917 * 150.00344 * 1 2 3 35 35 H 1.09007 * 109.46746 * 29.99751 * 3 2 1 36 36 H 1.08997 * 109.47584 * 149.99508 * 3 2 1 37 37 H 1.08994 * 113.73627 * 252.39367 * 6 4 3 38 38 H 1.08999 * 113.73385 * 23.67799 * 6 4 3 39 39 H 1.09007 * 113.75508 * 90.59595 * 7 6 4 40 40 H 1.08999 * 113.75934 * 221.85007 * 7 6 4 41 41 H 1.09004 * 109.46860 * 289.99905 * 9 8 4 42 42 H 1.08997 * 109.47175 * 50.00015 * 9 8 4 43 43 H 0.96996 * 120.00313 * 0.02562 * 12 10 9 44 44 H 0.96998 * 120.00390 * 180.02562 * 16 15 13 45 45 H 1.08993 * 110.49070 * 153.53243 * 27 25 23 46 46 H 1.09006 * 110.48110 * 30.88635 * 27 25 23 47 47 H 1.09000 * 110.75513 * 279.62815 * 28 27 25 48 48 H 1.09002 * 110.91731 * 156.32611 * 28 27 25 49 49 H 1.09002 * 110.48740 * 80.73781 * 29 28 27 50 50 H 1.08998 * 110.48604 * 203.24665 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 1.5599 2.1004 -1.9317 6 6 3.6920 2.6084 -1.6062 7 6 3.9988 1.7859 -2.8708 8 7 3.1872 0.7123 -2.2505 9 6 2.3028 0.0808 -3.2388 10 6 3.1259 -0.7402 -4.1977 11 8 4.3310 -0.7942 -4.0700 12 7 2.5231 -1.4150 -5.1965 13 6 3.2721 -2.1614 -6.0691 14 1 4.3451 -2.2090 -5.9560 15 6 2.6507 -2.8569 -7.0992 16 7 3.3684 -3.5727 -7.9353 17 14 0.7947 -2.7753 -7.2946 18 1 0.4399 -1.6385 -8.1817 19 1 0.3038 -4.0424 -7.8932 20 1 0.1650 -2.5799 -5.9639 21 6 2.1389 -1.1672 -0.0005 22 8 3.3518 -1.1671 -0.0010 23 6 1.3855 -2.4723 -0.0005 24 1 0.4484 -2.4737 -0.5573 25 6 2.2084 -3.7621 -0.0017 26 1 3.2939 -3.7021 -0.0794 27 6 1.5317 -5.0582 -0.4937 28 6 0.8594 -5.6407 0.7743 29 6 0.3454 -4.3733 1.5015 30 6 1.4528 -3.3248 1.2702 31 1 1.9830 -2.9531 2.1470 32 1 -0.3634 0.0000 1.0277 33 1 -0.3634 0.8899 -0.5138 34 1 -0.3633 -0.8900 -0.5138 35 1 1.6084 2.0284 0.5138 36 1 3.1499 1.1384 0.5139 37 1 3.4537 3.6524 -1.8090 38 1 4.4301 2.4860 -0.8136 39 1 3.5589 2.1971 -3.7795 40 1 5.0529 1.5332 -2.9853 41 1 1.5891 -0.5652 -2.7273 42 1 1.7647 0.8520 -3.7900 43 1 1.5595 -1.3721 -5.2984 44 1 2.9347 -4.0578 -8.6546 45 1 2.2756 -5.7525 -0.8842 46 1 0.7829 -4.8329 -1.2532 47 1 1.5874 -6.1701 1.3890 48 1 0.0303 -6.2966 0.5088 49 1 -0.5949 -4.0375 1.0642 50 1 0.2215 -4.5685 2.5667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233538342.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:18 Heat of formation + Delta-G solvation = 6.150894 kcal Electronic energy + Delta-G solvation = -30649.099481 eV Core-core repulsion = 26678.745565 eV Total energy + Delta-G solvation = -3970.353917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59950 -39.80153 -38.28096 -37.66211 -35.30629 -33.87967 -31.92388 -31.64083 -30.69253 -29.02945 -28.31557 -26.58835 -25.76738 -24.59576 -23.40901 -22.53883 -20.72427 -19.74292 -19.43562 -19.31079 -18.96055 -18.26686 -17.25821 -16.33170 -16.02501 -15.84462 -15.51225 -15.08788 -14.94551 -14.75968 -14.37981 -13.90239 -13.69224 -13.34138 -13.26146 -13.11392 -13.05080 -12.83403 -12.65896 -12.39967 -12.31633 -12.11158 -11.71380 -11.58605 -11.54744 -11.32381 -11.27702 -11.21865 -11.11945 -10.93812 -10.73758 -10.57486 -10.48077 -10.11751 -9.92456 -9.79020 -9.50389 -9.42308 -8.79599 -8.37846 -8.16517 -8.10255 -6.25542 -3.76103 2.67671 2.97192 3.03642 3.07581 3.15713 3.72137 3.82325 4.02608 4.13797 4.32079 4.57146 4.61557 4.68332 4.78797 4.83345 4.87916 5.00360 5.05016 5.10707 5.16518 5.23863 5.26127 5.29346 5.35783 5.39418 5.48253 5.50968 5.55752 5.57216 5.62420 5.63455 5.70917 5.77335 5.82724 5.88449 5.91155 5.98864 6.02235 6.09460 6.16197 6.17313 6.38319 6.40763 6.55014 6.76432 7.29623 7.48591 7.64757 8.21031 8.46303 8.66998 9.01994 9.48851 9.91854 10.88071 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007987 B = 0.004922 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3504.978550 B = 5687.617920 C = 8092.641214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.617 5.617 3 C 0.141 3.859 4 C 0.003 3.997 5 H 0.073 0.927 6 C -0.137 4.137 7 C 0.017 3.983 8 N -0.425 5.425 9 C 0.014 3.986 10 C 0.457 3.543 11 O -0.553 6.553 12 N -0.596 5.596 13 C -0.300 4.300 14 H 0.119 0.881 15 C 0.041 3.959 16 N -0.884 5.884 17 Si 0.877 3.123 18 H -0.272 1.272 19 H -0.277 1.277 20 H -0.271 1.271 21 C 0.544 3.456 22 O -0.499 6.499 23 C -0.160 4.160 24 H 0.116 0.884 25 C -0.124 4.124 26 H 0.123 0.877 27 C -0.099 4.099 28 C -0.123 4.123 29 C -0.094 4.094 30 C -0.143 4.143 31 H 0.111 0.889 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.047 0.953 43 H 0.368 0.632 44 H 0.272 0.728 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.671 6.772 19.489 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.351 5.351 3 C 0.017 3.983 4 C -0.108 4.108 5 H 0.091 0.909 6 C -0.175 4.175 7 C -0.112 4.112 8 N -0.148 5.148 9 C -0.118 4.118 10 C 0.242 3.758 11 O -0.434 6.434 12 N -0.236 5.236 13 C -0.428 4.428 14 H 0.136 0.864 15 C -0.162 4.162 16 N -0.525 5.525 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.202 1.202 20 H -0.196 1.196 21 C 0.331 3.669 22 O -0.372 6.372 23 C -0.181 4.181 24 H 0.133 0.867 25 C -0.142 4.142 26 H 0.141 0.859 27 C -0.137 4.137 28 C -0.160 4.160 29 C -0.131 4.131 30 C -0.162 4.162 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.065 0.935 43 H 0.200 0.800 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.840 5.990 19.702 23.272 hybrid contribution -2.301 0.619 -1.075 2.614 sum -13.140 6.609 18.627 23.735 Atomic orbital electron populations 1.21765 0.80146 1.02911 1.01477 1.47591 1.06315 1.05858 1.75364 1.21343 0.97793 0.84205 0.94911 1.23983 0.96529 0.93752 0.96502 0.90935 1.23367 0.97090 0.97601 0.99468 1.23733 1.01615 0.90810 0.94998 1.68562 1.13212 1.18380 1.14624 1.22429 0.96081 0.98652 0.94683 1.19591 0.88762 0.84280 0.83127 1.90575 1.14208 1.65234 1.73335 1.42206 1.08073 1.45360 1.27938 1.19420 0.94728 1.23130 1.05562 0.86367 1.25002 0.98136 0.96822 0.96197 1.69617 1.35482 1.30685 1.16690 0.86706 0.85668 0.78727 0.78486 1.19752 1.20183 1.19646 1.19426 0.87447 0.83817 0.76188 1.90764 1.13310 1.86568 1.46525 1.22421 1.01831 0.90921 1.02957 0.86664 1.23293 0.99490 0.91763 0.99702 0.85866 1.22011 0.99572 0.94818 0.97257 1.22696 0.99892 0.97029 0.96390 1.21976 0.96909 0.93695 1.00568 1.23280 1.01248 1.00016 0.91621 0.87053 0.92800 0.91476 0.91152 0.90615 0.89294 0.91330 0.89057 0.92004 0.88765 0.90102 0.93473 0.79995 0.91733 0.90579 0.91195 0.91218 0.91286 0.91403 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.27 59.85 0.61 1.26 16 2 N -0.62 -7.34 2.83 -181.57 -0.51 -7.85 16 3 C 0.14 1.59 5.59 -4.04 -0.02 1.57 16 4 C 0.00 0.04 3.58 -66.66 -0.24 -0.20 16 5 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 6 C -0.14 -1.64 7.84 -25.79 -0.20 -1.84 16 7 C 0.02 0.28 6.77 -2.64 -0.02 0.26 16 8 N -0.43 -7.45 4.65 -231.13 -1.08 -8.53 16 9 C 0.01 0.26 5.31 -4.98 -0.03 0.23 16 10 C 0.46 11.15 7.59 -10.99 -0.08 11.06 16 11 O -0.55 -15.88 15.14 5.54 0.08 -15.79 16 12 N -0.60 -14.91 5.09 -10.96 -0.06 -14.96 16 13 C -0.30 -8.77 10.16 -14.93 -0.15 -8.92 16 14 H 0.12 3.97 7.39 -52.49 -0.39 3.58 16 15 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 16 N -0.88 -26.42 13.96 55.50 0.77 -25.64 16 17 Si 0.88 19.82 27.74 -169.99 -4.71 15.10 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.27 -5.59 6.52 56.52 0.37 -5.22 16 21 C 0.54 8.30 6.75 -10.99 -0.07 8.22 16 22 O -0.50 -9.89 15.34 5.55 0.09 -9.80 16 23 C -0.16 -2.08 4.82 -91.69 -0.44 -2.52 16 24 H 0.12 1.32 6.44 -51.93 -0.33 0.99 16 25 C -0.12 -1.72 6.40 -89.29 -0.57 -2.29 16 26 H 0.12 2.03 7.79 -51.93 -0.40 1.63 16 27 C -0.10 -1.18 6.63 -25.07 -0.17 -1.35 16 28 C -0.12 -1.13 6.91 -24.74 -0.17 -1.30 16 29 C -0.09 -0.82 6.61 -25.08 -0.17 -0.99 16 30 C -0.14 -1.59 6.68 -89.22 -0.60 -2.19 16 31 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 34 H 0.07 0.55 6.00 -51.93 -0.31 0.24 16 35 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 36 H 0.09 1.18 7.15 -51.93 -0.37 0.81 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.10 7.92 -51.93 -0.41 0.69 16 39 H 0.06 0.98 7.78 -51.93 -0.40 0.57 16 40 H 0.09 1.75 8.10 -51.93 -0.42 1.33 16 41 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 42 H 0.05 0.76 7.69 -51.93 -0.40 0.36 16 43 H 0.37 8.12 5.76 -40.82 -0.24 7.88 16 44 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -36.61 398.34 -10.13 -46.74 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -8.31 Total: 12.67 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.41 Total: 2.06 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.87 Total: -56.99 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: 0.17 Total: -25.59 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.71 Total: 15.10 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.61 -10.13 -46.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233538342.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.892 kcal (2) G-P(sol) polarization free energy of solvation -36.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds