Wall clock time and date at job start Tue Mar 31 2020 18:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00285 * 2 1 4 4 C 1.52997 * 109.47243 * 270.00594 * 3 2 1 5 5 H 1.08996 * 112.96022 * 74.65968 * 4 3 2 6 6 C 1.53934 * 113.75783 * 206.30899 * 4 3 2 7 7 C 1.53941 * 86.34204 * 138.03265 * 6 4 3 8 8 N 1.47961 * 113.75719 * 303.01508 * 4 3 2 9 9 C 1.46892 * 111.00171 * 108.10122 * 8 4 3 10 10 C 1.50705 * 109.47408 * 170.00109 * 9 8 4 11 11 O 1.21296 * 119.99495 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00070 * 179.97438 * 10 9 8 13 13 C 1.37098 * 119.99729 * 179.97438 * 12 10 9 14 14 H 1.07997 * 120.00521 * 0.02562 * 13 12 10 15 15 C 1.38955 * 120.00058 * 180.02562 * 13 12 10 16 16 N 1.31404 * 120.00396 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99859 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46873 * 89.99966 * 17 15 13 19 19 H 1.48492 * 109.47101 * 210.00204 * 17 15 13 20 20 H 1.48503 * 109.46999 * 330.00199 * 17 15 13 21 21 C 1.34777 * 120.00044 * 180.02562 * 2 1 3 22 22 O 1.21292 * 119.99716 * 179.97438 * 21 2 1 23 23 C 1.50696 * 120.00270 * 359.97438 * 21 2 1 24 24 H 1.08998 * 115.52764 * 34.50022 * 23 21 2 25 25 C 1.52998 * 117.46437 * 179.97438 * 23 21 2 26 26 H 1.08999 * 119.29368 * 355.36290 * 25 23 21 27 27 C 1.54264 * 118.20354 * 201.21326 * 25 23 21 28 28 C 1.54892 * 104.19651 * 272.21420 * 27 25 23 29 29 C 1.54891 * 102.74959 * 37.93955 * 28 27 25 30 30 C 1.53165 * 117.38940 * 249.15445 * 23 21 2 31 31 H 1.08999 * 119.93352 * 3.45573 * 30 23 21 32 32 H 1.09006 * 109.47143 * 269.99869 * 1 2 3 33 33 H 1.08996 * 109.47603 * 30.00038 * 1 2 3 34 34 H 1.09000 * 109.46917 * 150.00344 * 1 2 3 35 35 H 1.09007 * 109.46746 * 29.99751 * 3 2 1 36 36 H 1.08997 * 109.47584 * 149.99508 * 3 2 1 37 37 H 1.08994 * 113.73627 * 252.39367 * 6 4 3 38 38 H 1.08999 * 113.73385 * 23.67799 * 6 4 3 39 39 H 1.09007 * 113.75508 * 90.59595 * 7 6 4 40 40 H 1.08999 * 113.75934 * 221.85007 * 7 6 4 41 41 H 1.09004 * 109.46860 * 289.99905 * 9 8 4 42 42 H 1.08997 * 109.47175 * 50.00015 * 9 8 4 43 43 H 0.96996 * 120.00313 * 0.02562 * 12 10 9 44 44 H 0.96998 * 120.00390 * 180.02562 * 16 15 13 45 45 H 1.08993 * 110.49070 * 153.53243 * 27 25 23 46 46 H 1.09006 * 110.48110 * 30.88635 * 27 25 23 47 47 H 1.09000 * 110.75513 * 279.62815 * 28 27 25 48 48 H 1.09002 * 110.91731 * 156.32611 * 28 27 25 49 49 H 1.09002 * 110.48740 * 80.73781 * 29 28 27 50 50 H 1.08998 * 110.48604 * 203.24665 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 1.5599 2.1004 -1.9317 6 6 3.6920 2.6084 -1.6062 7 6 3.9988 1.7859 -2.8708 8 7 3.1872 0.7123 -2.2505 9 6 2.3028 0.0808 -3.2388 10 6 3.1259 -0.7402 -4.1977 11 8 4.3310 -0.7942 -4.0700 12 7 2.5231 -1.4150 -5.1965 13 6 3.2721 -2.1614 -6.0691 14 1 4.3451 -2.2090 -5.9560 15 6 2.6507 -2.8569 -7.0992 16 7 3.3684 -3.5727 -7.9353 17 14 0.7947 -2.7753 -7.2946 18 1 0.4399 -1.6385 -8.1817 19 1 0.3038 -4.0424 -7.8932 20 1 0.1650 -2.5799 -5.9639 21 6 2.1389 -1.1672 -0.0005 22 8 3.3518 -1.1671 -0.0010 23 6 1.3855 -2.4723 -0.0005 24 1 0.4484 -2.4737 -0.5573 25 6 2.2084 -3.7621 -0.0017 26 1 3.2939 -3.7021 -0.0794 27 6 1.5317 -5.0582 -0.4937 28 6 0.8594 -5.6407 0.7743 29 6 0.3454 -4.3733 1.5015 30 6 1.4528 -3.3248 1.2702 31 1 1.9830 -2.9531 2.1470 32 1 -0.3634 0.0000 1.0277 33 1 -0.3634 0.8899 -0.5138 34 1 -0.3633 -0.8900 -0.5138 35 1 1.6084 2.0284 0.5138 36 1 3.1499 1.1384 0.5139 37 1 3.4537 3.6524 -1.8090 38 1 4.4301 2.4860 -0.8136 39 1 3.5589 2.1971 -3.7795 40 1 5.0529 1.5332 -2.9853 41 1 1.5891 -0.5652 -2.7273 42 1 1.7647 0.8520 -3.7900 43 1 1.5595 -1.3721 -5.2984 44 1 2.9347 -4.0578 -8.6546 45 1 2.2756 -5.7525 -0.8842 46 1 0.7829 -4.8329 -1.2532 47 1 1.5874 -6.1701 1.3890 48 1 0.0303 -6.2966 0.5088 49 1 -0.5949 -4.0375 1.0642 50 1 0.2215 -4.5685 2.5667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233538342.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:17 Heat of formation + Delta-G solvation = -21.217832 kcal Electronic energy + Delta-G solvation = -30650.286278 eV Core-core repulsion = 26678.745565 eV Total energy + Delta-G solvation = -3971.540714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.69779 -41.00242 -39.77711 -39.05909 -36.36505 -36.00569 -33.81566 -32.82674 -32.05674 -30.01283 -29.16114 -27.61442 -27.36968 -25.63582 -25.13124 -23.50891 -21.55019 -21.35227 -20.68874 -20.52138 -20.30464 -19.94981 -18.24026 -17.81778 -17.31338 -17.01517 -16.96209 -16.59341 -16.03843 -15.98981 -15.72424 -15.30647 -15.05725 -14.86826 -14.45928 -14.23553 -14.10686 -14.06120 -13.91955 -13.74653 -13.69173 -13.04723 -13.02607 -12.89784 -12.69187 -12.47304 -12.41977 -12.29897 -12.24914 -12.01842 -12.00753 -11.86635 -11.71315 -11.63282 -11.52777 -11.11052 -10.76518 -10.51784 -10.48099 -10.28501 -9.73182 -9.30802 -8.44211 -6.05572 1.24904 1.31544 1.40814 1.60000 1.91214 2.05854 2.19805 2.67158 2.72989 3.10606 3.13952 3.45288 3.60466 3.67792 3.79113 3.81207 3.97357 4.07169 4.17469 4.20608 4.22006 4.23386 4.31105 4.38282 4.41238 4.46581 4.49537 4.51811 4.59662 4.66547 4.79521 4.81236 4.85243 4.93719 4.96602 5.00030 5.03089 5.16523 5.19295 5.20560 5.26328 5.26866 5.45560 5.47738 5.51104 5.76226 5.88748 6.13009 6.52074 6.56724 6.84633 7.34734 7.40509 7.93557 8.74061 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007987 B = 0.004922 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3504.978550 B = 5687.617920 C = 8092.641214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.610 5.610 3 C 0.138 3.862 4 C 0.015 3.985 5 H 0.106 0.894 6 C -0.114 4.114 7 C 0.004 3.996 8 N -0.466 5.466 9 C 0.031 3.969 10 C 0.450 3.550 11 O -0.609 6.609 12 N -0.591 5.591 13 C -0.329 4.329 14 H 0.048 0.952 15 C -0.014 4.014 16 N -0.935 5.935 17 Si 0.966 3.034 18 H -0.254 1.254 19 H -0.271 1.271 20 H -0.233 1.233 21 C 0.534 3.466 22 O -0.563 6.563 23 C -0.160 4.160 24 H 0.139 0.861 25 C -0.163 4.163 26 H 0.077 0.923 27 C -0.099 4.099 28 C -0.116 4.116 29 C -0.085 4.085 30 C -0.114 4.114 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.388 0.612 44 H 0.280 0.720 45 H 0.059 0.941 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.067 8.624 21.207 29.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.342 5.342 3 C 0.015 3.985 4 C -0.095 4.095 5 H 0.124 0.876 6 C -0.152 4.152 7 C -0.125 4.125 8 N -0.190 5.190 9 C -0.100 4.100 10 C 0.238 3.762 11 O -0.493 6.493 12 N -0.233 5.233 13 C -0.458 4.458 14 H 0.066 0.934 15 C -0.213 4.213 16 N -0.576 5.576 17 Si 0.785 3.215 18 H -0.178 1.178 19 H -0.196 1.196 20 H -0.156 1.156 21 C 0.322 3.678 22 O -0.441 6.441 23 C -0.181 4.181 24 H 0.156 0.844 25 C -0.182 4.182 26 H 0.095 0.905 27 C -0.136 4.136 28 C -0.153 4.153 29 C -0.123 4.123 30 C -0.133 4.133 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.223 0.777 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.108 0.892 49 H 0.105 0.895 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.293 7.882 21.446 28.655 hybrid contribution -0.107 0.046 -1.612 1.616 sum -17.400 7.928 19.834 27.550 Atomic orbital electron populations 1.22091 0.77113 1.04398 1.03371 1.47695 1.08155 1.04914 1.73472 1.21471 0.97599 0.85071 0.94337 1.24129 0.97348 0.91720 0.96338 0.87634 1.23235 0.96591 0.99044 0.96376 1.23720 0.99234 0.92067 0.97462 1.68576 1.14834 1.20467 1.15084 1.22299 0.95198 0.98774 0.93773 1.20885 0.88767 0.83492 0.83082 1.90553 1.17284 1.66825 1.74618 1.42004 1.08693 1.45051 1.27554 1.18953 0.92474 1.26104 1.08265 0.93374 1.26137 1.05657 0.94985 0.94484 1.69808 1.38991 1.31346 1.17412 0.85364 0.76105 0.79464 0.80568 1.17784 1.19567 1.15614 1.19906 0.86928 0.85498 0.75480 1.90745 1.16076 1.87559 1.49724 1.22491 1.01775 0.89417 1.04440 0.84390 1.23227 0.97607 0.93787 1.03593 0.90486 1.22019 0.99168 0.93638 0.98797 1.22685 1.00278 0.97589 0.94775 1.22022 0.96313 0.91929 1.01994 1.23377 1.00889 0.98909 0.90125 0.87562 0.90707 0.88899 0.90771 0.85859 0.92273 0.87530 0.89812 0.91418 0.93208 0.88620 0.89853 0.77668 0.91060 0.92237 0.91071 0.91229 0.89222 0.89491 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 10.27 127.77 1.31 2.09 16 2 N -0.61 -12.80 2.83 -846.76 -2.40 -15.20 16 3 C 0.14 2.71 5.59 86.38 0.48 3.19 16 4 C 0.01 0.32 3.58 45.02 0.16 0.48 16 5 H 0.11 1.68 7.79 -2.39 -0.02 1.66 16 6 C -0.11 -2.52 7.84 31.24 0.25 -2.27 16 7 C 0.00 0.14 6.77 86.36 0.59 0.72 16 8 N -0.47 -16.23 4.65 -885.17 -4.12 -20.35 16 9 C 0.03 1.11 5.31 85.56 0.45 1.57 16 10 C 0.45 22.71 7.59 87.66 0.67 23.37 16 11 O -0.61 -37.84 15.14 -3.08 -0.05 -37.88 16 12 N -0.59 -30.04 5.09 -306.98 -1.56 -31.60 16 13 C -0.33 -20.37 10.16 84.04 0.85 -19.51 16 14 H 0.05 3.58 7.39 -2.91 -0.02 3.55 16 15 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 16 N -0.93 -58.11 13.96 21.66 0.30 -57.81 16 17 Si 0.97 39.70 27.74 68.60 1.90 41.60 16 18 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.23 -8.09 6.52 99.48 0.65 -7.44 16 21 C 0.53 16.19 6.75 87.66 0.59 16.78 16 22 O -0.56 -23.80 15.34 -3.07 -0.05 -23.84 16 23 C -0.16 -4.03 4.82 -11.49 -0.06 -4.09 16 24 H 0.14 2.76 6.44 -2.39 -0.02 2.75 16 25 C -0.16 -4.78 6.40 -9.93 -0.06 -4.84 16 26 H 0.08 2.92 7.79 -2.39 -0.02 2.91 16 27 C -0.10 -2.37 6.63 31.67 0.21 -2.16 16 28 C -0.12 -1.90 6.91 31.89 0.22 -1.67 16 29 C -0.09 -1.20 6.61 31.66 0.21 -0.99 16 30 C -0.11 -2.42 6.68 -9.88 -0.07 -2.49 16 31 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.09 0.59 8.07 -2.39 -0.02 0.57 16 34 H 0.07 0.78 6.00 -2.39 -0.01 0.77 16 35 H 0.12 1.29 8.07 -2.38 -0.02 1.27 16 36 H 0.06 1.55 7.15 -2.39 -0.02 1.53 16 37 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 1.98 7.92 -2.39 -0.02 1.96 16 39 H 0.07 2.11 7.78 -2.38 -0.02 2.09 16 40 H 0.05 2.04 8.10 -2.39 -0.02 2.02 16 41 H 0.10 3.10 7.90 -2.38 -0.02 3.08 16 42 H 0.08 2.36 7.69 -2.39 -0.02 2.34 16 43 H 0.39 16.28 5.76 -92.71 -0.53 15.74 16 44 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 45 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 47 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -93.57 398.34 0.65 -92.92 By element: Atomic # 1 Polarization: 41.98 SS G_CDS: 0.34 Total: 42.33 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 6.27 Total: 9.84 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -7.78 Total: -124.96 kcal Atomic # 8 Polarization: -61.64 SS G_CDS: -0.09 Total: -61.73 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 1.90 Total: 41.60 kcal Total: -93.57 0.65 -92.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233538342.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.704 kcal (2) G-P(sol) polarization free energy of solvation -93.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds