Wall clock time and date at job start Tue Mar 31 2020 18:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46503 * 119.99812 * 2 1 4 4 C 1.52999 * 109.47025 * 269.99804 * 3 2 1 5 5 H 1.09006 * 112.95873 * 287.14565 * 4 3 2 6 6 C 1.53930 * 113.76108 * 155.49529 * 4 3 2 7 7 C 1.53937 * 86.34436 * 221.96130 * 6 4 3 8 8 N 1.47959 * 113.75806 * 58.93312 * 4 3 2 9 9 C 1.46901 * 111.00506 * 251.90056 * 8 4 3 10 10 C 1.50705 * 109.47283 * 170.00170 * 9 8 4 11 11 O 1.21291 * 119.99749 * 0.02562 * 10 9 8 12 12 N 1.34769 * 119.99687 * 180.02562 * 10 9 8 13 13 C 1.37104 * 119.99654 * 179.97438 * 12 10 9 14 14 H 1.08000 * 119.99895 * 0.02562 * 13 12 10 15 15 C 1.38951 * 119.99889 * 180.02562 * 13 12 10 16 16 N 1.31418 * 119.99982 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99980 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47225 * 59.99676 * 17 15 13 19 19 H 1.48503 * 109.47003 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46959 * 299.99803 * 17 15 13 21 21 C 1.34770 * 119.99985 * 179.97438 * 2 1 3 22 22 O 1.21280 * 120.00163 * 179.97438 * 21 2 1 23 23 C 1.50702 * 119.99964 * 0.02562 * 21 2 1 24 24 H 1.08997 * 115.51683 * 34.51983 * 23 21 2 25 25 C 1.52998 * 117.46278 * 180.02562 * 23 21 2 26 26 H 1.09004 * 119.75429 * 356.47434 * 25 23 21 27 27 C 1.54266 * 118.20104 * 201.21417 * 25 23 21 28 28 C 1.54894 * 104.31305 * 272.14021 * 27 25 23 29 29 C 1.55238 * 102.58338 * 37.93170 * 28 27 25 30 30 C 1.53006 * 117.45963 * 249.03920 * 23 21 2 31 31 H 1.08997 * 119.75478 * 3.53075 * 30 23 21 32 32 H 1.09003 * 109.47150 * 270.00552 * 1 2 3 33 33 H 1.09001 * 109.47045 * 30.00082 * 1 2 3 34 34 H 1.08999 * 109.47242 * 150.00138 * 1 2 3 35 35 H 1.08997 * 109.47021 * 29.99766 * 3 2 1 36 36 H 1.08997 * 109.46714 * 149.99948 * 3 2 1 37 37 H 1.08994 * 113.73381 * 336.32358 * 6 4 3 38 38 H 1.09005 * 113.72900 * 107.49613 * 6 4 3 39 39 H 1.08998 * 113.75689 * 138.03637 * 7 6 4 40 40 H 1.08992 * 113.75889 * 269.29713 * 7 6 4 41 41 H 1.08996 * 109.47088 * 290.00312 * 9 8 4 42 42 H 1.09004 * 109.46749 * 50.00101 * 9 8 4 43 43 H 0.96995 * 120.00644 * 359.97438 * 12 10 9 44 44 H 0.97000 * 119.99628 * 179.97438 * 16 15 13 45 45 H 1.09002 * 110.48629 * 30.88774 * 27 25 23 46 46 H 1.08998 * 110.48744 * 153.39678 * 27 25 23 47 47 H 1.08996 * 110.75388 * 156.31523 * 28 27 25 48 48 H 1.08993 * 110.76071 * 279.69749 * 28 27 25 49 49 H 1.09005 * 110.46917 * 203.39204 * 29 28 27 50 50 H 1.09006 * 110.46947 * 80.77225 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 3.2146 1.1120 -1.9420 6 6 2.6541 3.2283 -1.6000 7 6 1.7732 3.1153 -2.8573 8 7 1.2179 1.8918 -2.2375 9 6 1.0689 0.8197 -3.2307 10 6 -0.3038 0.8943 -3.8482 11 8 -1.0813 1.7561 -3.4959 12 7 -0.6675 0.0034 -4.7918 13 6 -1.9164 0.0709 -5.3532 14 1 -2.6087 0.8383 -5.0396 15 6 -2.2916 -0.8479 -6.3257 16 7 -1.4494 -1.7819 -6.7070 17 14 -3.9930 -0.7555 -7.0912 18 1 -4.1660 0.5611 -7.7558 19 1 -4.1443 -1.8404 -8.0938 20 1 -5.0216 -0.9142 -6.0319 21 6 2.1389 -1.1671 0.0005 22 8 3.3517 -1.1672 0.0001 23 6 1.3854 -2.4723 0.0005 24 1 0.4489 -2.4738 -0.5573 25 6 2.2083 -3.7621 0.0017 26 1 3.2955 -3.7102 -0.0556 27 6 1.5322 -5.0586 -0.4902 28 6 0.8584 -5.6433 0.7761 29 6 0.3431 -4.3719 1.5026 30 6 1.4527 -3.3258 1.2686 31 1 1.9832 -2.9524 2.1445 32 1 -0.3633 0.0001 1.0277 33 1 -0.3633 0.8900 -0.5139 34 1 -0.3634 -0.8900 -0.5138 35 1 1.6084 2.0284 0.5138 36 1 3.1499 1.1384 0.5138 37 1 2.2038 3.8160 -0.8001 38 1 3.6850 3.5146 -1.8088 39 1 1.0487 3.9232 -2.9599 40 1 2.3356 2.9297 -3.7723 41 1 1.8238 0.9371 -4.0080 42 1 1.1961 -0.1470 -2.7435 43 1 -0.0456 -0.6855 -5.0738 44 1 -1.7114 -2.4235 -7.3856 45 1 0.7847 -4.8340 -1.2510 46 1 2.2766 -5.7523 -0.8811 47 1 0.0307 -6.2988 0.5054 48 1 1.5861 -6.1720 1.3917 49 1 0.2198 -4.5655 2.5683 50 1 -0.5966 -4.0365 1.0636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233538344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:21 Heat of formation + Delta-G solvation = -5.428115 kcal Electronic energy + Delta-G solvation = -30160.153321 eV Core-core repulsion = 26189.297301 eV Total energy + Delta-G solvation = -3970.856020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.67635 -39.86811 -38.35477 -37.64406 -35.29928 -33.88295 -31.99766 -31.31751 -30.59896 -28.97102 -28.37022 -26.41896 -25.71721 -24.66046 -23.65087 -22.57626 -20.79261 -19.81741 -19.55968 -19.23814 -18.94244 -17.87770 -17.24388 -16.39189 -16.01012 -15.81004 -15.64889 -15.06746 -14.96334 -14.60250 -14.41718 -13.93321 -13.76984 -13.46325 -13.39752 -13.28003 -12.94615 -12.82323 -12.54516 -12.33741 -12.09439 -11.65294 -11.58365 -11.54055 -11.45681 -11.43499 -11.27876 -11.23059 -11.02113 -10.99603 -10.79435 -10.56887 -10.44074 -10.21181 -10.19633 -9.91731 -9.61037 -9.47971 -8.89022 -8.39846 -8.11877 -7.94743 -6.40299 -3.81304 2.47216 2.97593 3.19670 3.25400 3.29533 3.61479 3.92324 3.98069 4.22100 4.26167 4.55687 4.58599 4.61705 4.79769 4.91364 5.01327 5.05865 5.07394 5.20336 5.23230 5.24300 5.30400 5.37128 5.38314 5.50181 5.52899 5.53839 5.58416 5.66528 5.68565 5.71727 5.78420 5.83047 5.84492 5.85902 5.94114 5.97344 6.01054 6.11013 6.15886 6.26945 6.28155 6.32434 6.54637 6.68169 7.24990 7.46099 7.55502 8.07149 8.23102 8.63575 9.19519 9.56436 10.08852 10.77427 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007971 B = 0.004158 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.083541 B = 6732.470499 C = 9464.195360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.599 5.599 3 C 0.139 3.861 4 C 0.008 3.992 5 H 0.079 0.921 6 C -0.137 4.137 7 C 0.010 3.990 8 N -0.439 5.439 9 C 0.013 3.987 10 C 0.448 3.552 11 O -0.576 6.576 12 N -0.567 5.567 13 C -0.298 4.298 14 H 0.102 0.898 15 C 0.023 3.977 16 N -0.903 5.903 17 Si 0.929 3.071 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.543 3.457 22 O -0.548 6.548 23 C -0.162 4.162 24 H 0.124 0.876 25 C -0.129 4.129 26 H 0.120 0.880 27 C -0.100 4.100 28 C -0.122 4.122 29 C -0.097 4.097 30 C -0.138 4.138 31 H 0.111 0.889 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.056 -2.288 15.122 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.330 5.330 3 C 0.016 3.984 4 C -0.103 4.103 5 H 0.097 0.903 6 C -0.175 4.175 7 C -0.119 4.119 8 N -0.162 5.162 9 C -0.119 4.119 10 C 0.233 3.767 11 O -0.459 6.459 12 N -0.204 5.204 13 C -0.428 4.428 14 H 0.119 0.881 15 C -0.179 4.179 16 N -0.544 5.544 17 Si 0.756 3.244 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.199 1.199 21 C 0.332 3.668 22 O -0.426 6.426 23 C -0.182 4.182 24 H 0.142 0.858 25 C -0.148 4.148 26 H 0.138 0.862 27 C -0.137 4.137 28 C -0.160 4.160 29 C -0.134 4.134 30 C -0.157 4.157 31 H 0.129 0.871 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.224 0.776 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.470 -1.856 15.536 17.338 hybrid contribution 0.195 -0.564 -1.345 1.471 sum 7.665 -2.419 14.191 16.309 Atomic orbital electron populations 1.21965 0.78309 1.05099 1.01252 1.47635 1.07643 1.05265 1.72446 1.21380 0.97346 0.84631 0.95011 1.23940 0.93349 0.96624 0.96400 0.90342 1.23356 1.00012 0.95084 0.99051 1.23832 0.96888 0.95528 0.95642 1.68299 1.29621 1.02406 1.15841 1.22441 0.97459 0.96695 0.95294 1.19675 0.88597 0.84936 0.83449 1.90511 1.53586 1.37630 1.64176 1.41884 1.15345 1.28453 1.34765 1.19626 0.91060 1.14211 1.17867 0.88063 1.25239 0.99625 0.95681 0.97347 1.69611 1.35902 1.17175 1.31715 0.85948 0.81894 0.77823 0.78726 1.19957 1.21000 1.19928 1.19628 0.87152 0.84468 0.75579 1.90656 1.13858 1.87428 1.50682 1.22432 1.02139 0.90156 1.03516 0.85788 1.23212 0.98966 0.92004 1.00585 0.86225 1.22027 0.99554 0.94482 0.97659 1.22747 0.99911 0.97113 0.96218 1.22075 0.97153 0.93471 1.00726 1.23182 1.01109 0.99801 0.91581 0.87057 0.93118 0.88558 0.91251 0.89856 0.89784 0.89093 0.91145 0.89064 0.91664 0.92875 0.90107 0.77645 0.91877 0.90850 0.90896 0.91085 0.91306 0.91037 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 10.06 59.85 0.60 1.59 16 2 N -0.60 -8.05 2.82 -181.57 -0.51 -8.56 16 3 C 0.14 1.74 5.54 -4.04 -0.02 1.71 16 4 C 0.01 0.10 3.55 -66.66 -0.24 -0.13 16 5 H 0.08 1.13 7.93 -51.93 -0.41 0.72 16 6 C -0.14 -1.54 7.84 -25.80 -0.20 -1.74 16 7 C 0.01 0.14 7.95 -2.76 -0.02 0.12 16 8 N -0.44 -7.11 4.37 -232.14 -1.01 -8.12 16 9 C 0.01 0.24 5.28 -4.97 -0.03 0.22 16 10 C 0.45 10.55 7.83 -10.99 -0.09 10.47 16 11 O -0.58 -15.38 16.01 5.55 0.09 -15.29 16 12 N -0.57 -14.40 5.29 -10.96 -0.06 -14.46 16 13 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 14 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 15 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 16 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 17 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.54 7.95 7.46 -10.99 -0.08 7.87 16 22 O -0.55 -9.45 15.92 5.56 0.09 -9.36 16 23 C -0.16 -2.04 4.83 -91.77 -0.44 -2.49 16 24 H 0.12 1.57 6.44 -51.93 -0.33 1.24 16 25 C -0.13 -1.53 6.38 -89.53 -0.57 -2.10 16 26 H 0.12 1.54 7.81 -51.93 -0.41 1.14 16 27 C -0.10 -1.01 6.61 -25.07 -0.17 -1.18 16 28 C -0.12 -1.04 6.94 -24.55 -0.17 -1.21 16 29 C -0.10 -0.86 6.64 -24.87 -0.17 -1.03 16 30 C -0.14 -1.48 6.64 -89.52 -0.59 -2.07 16 31 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 1.47 7.25 -51.93 -0.38 1.09 16 34 H 0.07 0.92 6.00 -51.93 -0.31 0.60 16 35 H 0.08 0.93 7.84 -51.93 -0.41 0.52 16 36 H 0.08 1.04 7.42 -51.93 -0.39 0.65 16 37 H 0.09 0.94 7.94 -51.93 -0.41 0.52 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.07 0.92 7.48 -51.93 -0.39 0.53 16 41 H 0.05 0.93 7.38 -51.93 -0.38 0.55 16 42 H 0.08 1.46 8.08 -51.93 -0.42 1.04 16 43 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 403.40 15.07 6.08 6.08 Total: -1.00 -31.94 403.40 -10.35 -42.29 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -8.30 Total: 13.17 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.43 Total: 2.13 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.86 Total: -54.97 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: 0.18 Total: -24.65 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.94 -10.35 -42.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233538344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.863 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds