Wall clock time and date at job start Tue Mar 31 2020 18:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46812 * 200.80945 * 3 2 1 5 5 C 1.53007 * 109.46773 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46557 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.46713 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00276 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99842 * 179.97438 * 7 6 5 10 10 C 1.46504 * 120.00354 * 0.02562 * 9 7 6 11 11 C 1.46503 * 119.99852 * 180.02562 * 9 7 6 12 12 C 1.53001 * 109.47135 * 90.00344 * 11 9 7 13 13 H 1.09000 * 112.74900 * 75.76962 * 12 11 9 14 14 C 1.53514 * 113.52776 * 206.59202 * 12 11 9 15 15 C 1.53512 * 83.57419 * 140.79682 * 14 12 11 16 16 N 1.47480 * 87.93405 * 333.97460 * 15 14 12 17 17 C 1.46895 * 111.00073 * 138.70071 * 16 15 14 18 18 C 1.50700 * 109.47048 * 74.02988 * 17 16 15 19 19 O 1.21292 * 119.99931 * 0.02562 * 18 17 16 20 20 N 1.34784 * 119.99961 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99504 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00446 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99362 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00245 * 359.71960 * 23 21 20 25 25 Si 1.86803 * 119.99625 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47228 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47000 * 119.99583 * 25 23 21 28 28 H 1.48493 * 109.46907 * 239.99475 * 25 23 21 29 29 H 4.44647 * 5.63453 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47085 * 80.81280 * 3 2 1 31 31 H 1.08994 * 109.47300 * 320.81147 * 3 2 1 32 32 H 1.09004 * 109.47023 * 60.00296 * 4 3 2 33 33 H 1.08994 * 109.47352 * 300.00169 * 4 3 2 34 34 H 1.08991 * 109.46783 * 60.00437 * 5 4 3 35 35 H 1.08998 * 109.46927 * 300.00227 * 5 4 3 36 36 H 1.08998 * 109.47741 * 60.00457 * 6 5 4 37 37 H 1.09000 * 109.47913 * 299.99945 * 6 5 4 38 38 H 1.09004 * 109.46830 * 270.00100 * 10 9 7 39 39 H 1.08998 * 109.46817 * 29.99828 * 10 9 7 40 40 H 1.08998 * 109.47073 * 149.99646 * 10 9 7 41 41 H 1.08996 * 109.46999 * 330.00168 * 11 9 7 42 42 H 1.09001 * 109.46938 * 210.00231 * 11 9 7 43 43 H 1.09002 * 114.17350 * 254.44407 * 14 12 11 44 44 H 1.09000 * 114.17301 * 27.15127 * 14 12 11 45 45 H 1.08997 * 113.47545 * 219.20480 * 15 14 12 46 46 H 1.09001 * 113.47492 * 88.74319 * 15 14 12 47 47 H 1.09004 * 109.47549 * 314.03005 * 17 16 15 48 48 H 1.09005 * 109.47114 * 194.03080 * 17 16 15 49 49 H 0.96999 * 120.00044 * 359.97438 * 20 18 17 50 50 H 0.97000 * 120.00281 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3493 0.5125 5 6 4.6854 1.3498 0.5131 6 6 5.1947 2.6982 1.0261 7 6 6.7017 2.6984 1.0273 8 8 7.3086 1.7170 0.6541 9 7 7.3751 3.7897 1.4422 10 6 6.6420 4.9756 1.8926 11 6 8.8401 3.7902 1.4429 12 6 9.3505 4.3028 0.0947 13 1 9.2578 5.3840 -0.0077 14 6 10.7418 3.7705 -0.2765 15 6 10.1433 3.6855 -1.6875 16 7 8.8156 3.5554 -1.0587 17 6 7.8114 4.3486 -1.7801 18 6 7.4690 3.6645 -3.0785 19 8 8.0080 2.6188 -3.3736 20 7 6.5629 4.2142 -3.9113 21 6 6.2510 3.5916 -5.0922 22 1 6.7316 2.6609 -5.3554 23 6 5.3173 4.1586 -5.9510 24 7 4.7292 5.2886 -5.6287 25 14 4.8928 3.3106 -7.5604 26 1 5.6833 2.0597 -7.6844 27 1 3.4440 2.9852 -7.5814 28 1 5.2138 4.2131 -8.6951 29 1 -1.0502 -0.0002 -0.0003 30 1 3.0094 -0.1633 -1.0145 31 1 3.0097 -0.7956 0.6493 32 1 2.7919 1.5132 1.5270 33 1 2.7917 2.1456 -0.1368 34 1 5.0491 1.1857 -0.5012 35 1 5.0487 0.5535 1.1627 36 1 4.8310 2.8619 2.0405 37 1 4.8314 3.4948 0.3769 38 1 6.4605 5.6346 1.0435 39 1 5.6895 4.6709 2.3261 40 1 7.2306 5.5033 2.6430 41 1 9.2036 2.7759 1.6072 42 1 9.2029 4.4397 2.2395 43 1 11.5420 4.5035 -0.1745 44 1 10.9821 2.8034 0.1653 45 1 10.4523 2.7966 -2.2374 46 1 10.2621 4.6020 -2.2655 47 1 8.2123 5.3409 -1.9869 48 1 6.9132 4.4397 -1.1693 49 1 6.1310 5.0499 -3.6747 50 1 4.0771 5.6843 -6.2280 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233762751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:27 Heat of formation + Delta-G solvation = 12.934609 kcal Electronic energy + Delta-G solvation = -29901.861658 eV Core-core repulsion = 25931.801905 eV Total energy + Delta-G solvation = -3970.059753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.45214 -39.15596 -37.63390 -36.13195 -35.22360 -33.84695 -33.14437 -31.30980 -30.74341 -30.02332 -28.62204 -26.51576 -25.70387 -25.02298 -23.63410 -22.92611 -21.16025 -19.50273 -19.20714 -18.94912 -18.00968 -17.83951 -16.77711 -16.32452 -16.14601 -15.68531 -15.54435 -15.39244 -14.52356 -14.45725 -14.23859 -14.00719 -13.81791 -13.69712 -13.43966 -13.21432 -12.76714 -12.64532 -12.58818 -12.46075 -12.20423 -11.83291 -11.64939 -11.59929 -11.42362 -11.38316 -11.23325 -11.13648 -11.03214 -10.70337 -10.58453 -10.35121 -10.30633 -10.18648 -10.17356 -10.07330 -9.45944 -9.39279 -8.73644 -8.30564 -8.11553 -7.90446 -6.37342 -3.77345 2.79301 2.84283 2.97258 3.13685 3.19068 3.29226 3.37072 3.96891 4.12121 4.29515 4.34103 4.61833 4.69592 4.90282 4.94125 4.97055 5.02360 5.09913 5.17415 5.26202 5.27802 5.29832 5.37112 5.43575 5.51252 5.53660 5.59292 5.59777 5.72683 5.75153 5.76254 5.83168 5.87177 5.91673 5.99916 6.02856 6.03700 6.18357 6.32654 6.34474 6.40236 6.48646 6.61015 6.81094 7.39703 7.56205 7.59785 7.61188 8.11572 8.53154 8.67619 9.23846 9.59876 10.12995 10.80845 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.005744 B = 0.005086 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4873.649327 B = 5503.659755 C = 9410.184099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.177 4.177 3 C -0.017 4.017 4 C -0.112 4.112 5 C -0.105 4.105 6 C -0.138 4.138 7 C 0.513 3.487 8 O -0.503 6.503 9 N -0.622 5.622 10 C 0.079 3.921 11 C 0.138 3.862 12 C 0.001 3.999 13 H 0.071 0.929 14 C -0.138 4.138 15 C 0.010 3.990 16 N -0.415 5.415 17 C 0.015 3.985 18 C 0.448 3.552 19 O -0.571 6.571 20 N -0.569 5.569 21 C -0.294 4.294 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.905 5.905 25 Si 0.926 3.074 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.215 0.785 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.060 0.940 47 H 0.047 0.953 48 H 0.080 0.920 49 H 0.390 0.610 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 1.550 18.612 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.177 4.177 3 C -0.054 4.054 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.178 4.178 7 C 0.300 3.700 8 O -0.375 6.375 9 N -0.358 5.358 10 C -0.065 4.065 11 C 0.015 3.985 12 C -0.110 4.110 13 H 0.089 0.911 14 C -0.176 4.176 15 C -0.119 4.119 16 N -0.137 5.137 17 C -0.117 4.117 18 C 0.233 3.767 19 O -0.454 6.454 20 N -0.206 5.206 21 C -0.423 4.423 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.547 5.547 25 Si 0.754 3.246 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.232 0.768 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.099 0.901 49 H 0.223 0.777 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.990 -0.271 18.168 18.197 hybrid contribution -0.718 1.462 -0.969 1.895 sum 0.272 1.192 17.199 17.242 Atomic orbital electron populations 1.24859 0.95942 1.01382 1.01922 1.23286 0.94692 0.99974 0.99755 1.18799 0.84382 0.98851 1.03347 1.21538 0.95558 0.96536 1.01353 1.21345 0.93696 0.95816 1.03441 1.21687 0.92558 1.00706 1.02805 1.20548 0.89885 0.82605 0.76946 1.90751 1.69901 1.33072 1.43808 1.47742 1.06345 1.14815 1.66851 1.21773 0.97169 0.87969 0.99565 1.21388 0.79495 1.02631 0.95013 1.23916 0.95278 0.97138 0.94663 0.91076 1.23182 0.95044 1.01781 0.97602 1.23577 0.90568 1.02048 0.95679 1.68946 1.03266 1.38361 1.03130 1.22433 0.97979 0.95162 0.96151 1.19683 0.83994 0.87412 0.85635 1.90538 1.54929 1.23943 1.75974 1.41865 1.36961 1.23468 1.18321 1.19730 1.21045 1.06865 0.94686 0.88001 1.25216 0.96678 0.96217 0.99847 1.69615 1.28441 1.18460 1.38137 0.85841 0.78259 0.79317 0.81212 1.19234 1.20768 1.20831 0.76833 0.89004 0.89563 0.91909 0.91294 0.90244 0.91253 0.89624 0.89155 0.92895 0.91129 0.91400 0.89417 0.90906 0.91077 0.88865 0.89238 0.92164 0.93488 0.90132 0.77742 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.56 19.25 29.55 0.57 -2.00 16 2 C -0.18 -2.25 13.34 -37.12 -0.50 -2.75 16 3 C -0.02 -0.20 5.70 -29.52 -0.17 -0.37 16 4 C -0.11 -1.27 5.17 -26.73 -0.14 -1.41 16 5 C -0.11 -1.36 4.50 -26.73 -0.12 -1.48 16 6 C -0.14 -1.64 4.25 -27.88 -0.12 -1.75 16 7 C 0.51 7.55 6.77 -10.98 -0.07 7.48 16 8 O -0.50 -9.66 14.99 5.56 0.08 -9.57 16 9 N -0.62 -7.35 2.73 -181.57 -0.50 -7.84 16 10 C 0.08 0.63 10.29 59.85 0.62 1.25 16 11 C 0.14 1.58 5.63 -4.04 -0.02 1.56 16 12 C 0.00 0.02 3.37 -71.43 -0.24 -0.22 16 13 H 0.07 0.84 7.77 -51.93 -0.40 0.44 16 14 C -0.14 -1.68 8.00 -26.20 -0.21 -1.89 16 15 C 0.01 0.17 6.71 -7.55 -0.05 0.12 16 16 N -0.41 -7.39 4.66 -237.94 -1.11 -8.50 16 17 C 0.01 0.28 5.31 -4.98 -0.03 0.26 16 18 C 0.45 11.09 7.62 -10.98 -0.08 11.01 16 19 O -0.57 -16.34 15.34 5.55 0.09 -16.25 16 20 N -0.57 -14.83 5.29 -10.96 -0.06 -14.89 16 21 C -0.29 -8.38 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 25 Si 0.93 21.54 29.55 -169.99 -5.02 16.52 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.21 1.67 7.80 -54.08 -0.42 1.25 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 35 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.09 0.77 7.40 -51.93 -0.38 0.38 16 37 H 0.09 1.07 8.11 -51.93 -0.42 0.64 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.47 6.44 -51.93 -0.33 0.13 16 40 H 0.07 0.41 7.89 -51.93 -0.41 0.00 16 41 H 0.09 1.17 7.16 -51.93 -0.37 0.80 16 42 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.15 7.94 -51.93 -0.41 0.74 16 45 H 0.09 1.68 8.13 -51.93 -0.42 1.26 16 46 H 0.06 0.97 7.70 -51.93 -0.40 0.57 16 47 H 0.05 0.81 7.56 -51.93 -0.39 0.42 16 48 H 0.08 1.45 7.66 -51.93 -0.40 1.05 16 49 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 50 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 415.92 15.07 6.27 6.27 Total: -1.00 -35.87 415.92 -8.72 -44.59 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -8.39 Total: 12.12 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.81 Total: 1.75 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.94 Total: -55.42 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: 0.17 Total: -25.83 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.87 -8.72 -44.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233762751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.525 kcal (2) G-P(sol) polarization free energy of solvation -35.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds