Wall clock time and date at job start Tue Mar 31 2020 18:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00242 * 2 1 4 4 C 1.53007 * 109.46955 * 270.00190 * 3 2 1 5 5 H 1.09005 * 112.74379 * 75.77167 * 4 3 2 6 6 C 1.53510 * 113.52764 * 206.59151 * 4 3 2 7 7 C 1.53505 * 83.57349 * 140.80029 * 6 4 3 8 8 N 1.47474 * 113.47486 * 304.99820 * 4 3 2 9 9 C 1.46905 * 110.99927 * 106.47076 * 8 4 3 10 10 C 1.50700 * 109.47071 * 169.99467 * 9 8 4 11 11 O 1.21293 * 120.00069 * 0.02562 * 10 9 8 12 12 N 1.34770 * 119.99928 * 180.02562 * 10 9 8 13 13 C 1.37109 * 120.00150 * 180.02562 * 12 10 9 14 14 H 1.07999 * 119.99424 * 0.02562 * 13 12 10 15 15 C 1.38941 * 120.00086 * 179.97438 * 13 12 10 16 16 N 1.31415 * 120.00150 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00118 * 179.72304 * 15 13 12 18 18 H 1.48491 * 109.47272 * 270.28291 * 17 15 13 19 19 H 1.48503 * 109.46679 * 30.28206 * 17 15 13 20 20 H 1.48495 * 109.47307 * 150.27854 * 17 15 13 21 21 C 1.34777 * 119.99742 * 180.02562 * 2 1 3 22 22 O 1.21284 * 119.99822 * 174.02097 * 21 2 1 23 23 C 1.50702 * 120.00243 * 354.02383 * 21 2 1 24 24 C 1.52997 * 115.55232 * 174.05228 * 23 21 2 25 25 C 1.53006 * 117.49751 * 34.19835 * 24 23 21 26 26 C 1.52992 * 60.00024 * 252.51283 * 25 24 23 27 27 C 1.52995 * 117.49862 * 28.37875 * 23 21 2 28 28 C 1.53001 * 117.49622 * 319.71951 * 23 21 2 29 29 H 1.08992 * 109.47560 * 95.60692 * 1 2 3 30 30 H 1.08998 * 109.46935 * 215.61119 * 1 2 3 31 31 H 1.09002 * 109.46619 * 335.60708 * 1 2 3 32 32 H 1.09000 * 109.47148 * 150.00280 * 3 2 1 33 33 H 1.09000 * 109.46725 * 30.00037 * 3 2 1 34 34 H 1.09005 * 114.16545 * 254.44467 * 6 4 3 35 35 H 1.08993 * 114.17492 * 26.96008 * 6 4 3 36 36 H 1.08997 * 113.47947 * 219.20432 * 7 6 4 37 37 H 1.09005 * 113.47893 * 88.74207 * 7 6 4 38 38 H 1.08998 * 109.46763 * 49.99881 * 9 8 4 39 39 H 1.08990 * 109.47269 * 289.99915 * 9 8 4 40 40 H 0.96998 * 120.00626 * 0.02562 * 12 10 9 41 41 H 0.96999 * 119.99780 * 359.71374 * 16 15 13 42 42 H 1.08995 * 115.55255 * 179.91112 * 24 23 21 43 43 H 1.09002 * 117.49785 * 0.02562 * 25 24 23 44 44 H 1.09006 * 117.49582 * 145.01794 * 25 24 23 45 45 H 1.09002 * 117.50008 * 252.50774 * 26 25 24 46 46 H 1.09006 * 117.49788 * 107.49190 * 26 25 24 47 47 H 1.09010 * 117.50003 * 0.02562 * 27 23 21 48 48 H 1.09003 * 117.50263 * 145.02070 * 27 23 21 49 49 H 1.08994 * 117.50123 * 214.97906 * 28 23 21 50 50 H 1.09004 * 117.49640 * 0.02562 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 1 1.5624 2.1175 -1.9222 6 6 3.6936 2.5998 -1.6009 7 6 3.8966 1.7908 -2.8895 8 7 3.1443 0.6924 -2.2551 9 6 2.2214 0.0655 -3.2108 10 6 3.0028 -0.7820 -4.1815 11 8 4.2097 -0.8568 -4.0862 12 7 2.3607 -1.4567 -5.1555 13 6 3.0715 -2.2282 -6.0383 14 1 4.1460 -2.2955 -5.9529 15 6 2.4094 -2.9243 -7.0421 16 7 1.1019 -2.8428 -7.1457 17 14 3.3786 -3.9692 -8.2497 18 1 3.7711 -3.1404 -9.4176 19 1 4.5975 -4.4939 -7.5830 20 1 2.5378 -5.1041 -8.7082 21 6 2.1389 -1.1672 -0.0005 22 8 3.3467 -1.1701 -0.1099 23 6 1.3915 -2.4689 0.1348 24 6 2.2370 -3.7345 -0.0200 25 6 3.6778 -3.6887 0.4930 26 6 3.4012 -3.6894 -1.0117 27 6 -0.0482 -2.5137 -0.3809 28 6 0.2261 -2.5146 1.1250 29 1 -0.3634 -0.1004 -1.0226 30 1 -0.3633 -0.8355 0.5984 31 1 -0.3633 0.9360 0.4244 32 1 3.1500 1.1383 0.5138 33 1 1.6085 2.0283 0.5138 34 1 3.4692 3.6537 -1.7662 35 1 4.4594 2.4367 -0.8426 36 1 4.9397 1.5447 -3.0880 37 1 3.3919 2.2194 -3.7554 38 1 1.6825 0.8399 -3.7567 39 1 1.5106 -0.5608 -2.6721 40 1 1.3956 -1.3967 -5.2320 41 1 0.5986 -2.3000 -6.5188 42 1 1.6968 -4.6759 0.0793 43 1 4.0231 -2.7570 0.9411 44 1 4.0855 -4.6002 0.9303 45 1 3.6271 -4.6013 -1.5646 46 1 3.5647 -2.7580 -1.5539 47 1 -0.4548 -1.6018 -0.8185 48 1 -0.3932 -3.4450 -0.8302 49 1 0.0615 -3.4465 1.6659 50 1 -0.0003 -1.6031 1.6783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235664965.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:12 Heat of formation + Delta-G solvation = 81.122362 kcal Electronic energy + Delta-G solvation = -31642.936388 eV Core-core repulsion = 27675.833478 eV Total energy + Delta-G solvation = -3967.102910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.07333 -39.90493 -37.83030 -36.96590 -36.54329 -34.26505 -34.08938 -31.23541 -30.48527 -28.86467 -27.24559 -25.51784 -24.33786 -23.55710 -23.31401 -22.81106 -21.71931 -21.24625 -19.62328 -19.46315 -18.97928 -17.82695 -16.57368 -16.19452 -16.14012 -15.90709 -15.70251 -15.10209 -15.00009 -14.39630 -14.32024 -13.99530 -13.82388 -13.66167 -13.52923 -13.46529 -13.07906 -12.73994 -12.29826 -12.17690 -11.75083 -11.62280 -11.44896 -11.38574 -11.25880 -11.17769 -11.10822 -10.90343 -10.81361 -10.73114 -10.71990 -10.37975 -10.18259 -9.80493 -9.79742 -9.45922 -9.26595 -9.18272 -8.76564 -8.32963 -8.15584 -7.94561 -6.68470 -3.80474 2.65199 2.98581 3.34882 3.38740 3.58052 3.73703 3.93187 4.09964 4.29079 4.33799 4.38127 4.47149 4.55936 4.76568 4.82931 4.92286 4.94394 4.98644 5.09704 5.25784 5.28300 5.28676 5.30862 5.39114 5.44555 5.50426 5.52068 5.54658 5.59330 5.65568 5.77069 5.77652 5.82481 5.83604 5.88795 5.94309 6.07821 6.09567 6.17620 6.32161 6.35428 6.52996 6.64499 6.75639 6.89119 7.32770 7.50855 7.88767 8.15520 8.47909 8.68358 8.89669 9.55899 9.98528 10.75244 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.004591 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.781223 B = 6097.297901 C = 7346.906679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.617 5.617 3 C 0.140 3.860 4 C 0.001 3.999 5 H 0.070 0.930 6 C -0.137 4.137 7 C 0.009 3.991 8 N -0.410 5.410 9 C 0.015 3.985 10 C 0.452 3.548 11 O -0.564 6.564 12 N -0.580 5.580 13 C -0.376 4.376 14 H 0.098 0.902 15 C -0.011 4.011 16 N -0.905 5.905 17 Si 1.092 2.908 18 H -0.286 1.286 19 H -0.284 1.284 20 H -0.282 1.282 21 C 0.548 3.452 22 O -0.484 6.484 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.169 4.169 26 C -0.157 4.157 27 C -0.187 4.187 28 C -0.168 4.168 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.373 0.627 41 H 0.260 0.740 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.114 0.886 47 H 0.126 0.874 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.466 7.217 17.696 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.352 5.352 3 C 0.017 3.983 4 C -0.111 4.111 5 H 0.088 0.912 6 C -0.175 4.175 7 C -0.120 4.120 8 N -0.132 5.132 9 C -0.117 4.117 10 C 0.237 3.763 11 O -0.446 6.446 12 N -0.219 5.219 13 C -0.505 4.505 14 H 0.115 0.885 15 C -0.213 4.213 16 N -0.545 5.545 17 Si 0.918 3.082 18 H -0.212 1.212 19 H -0.210 1.210 20 H -0.207 1.207 21 C 0.335 3.665 22 O -0.356 6.356 23 C -0.116 4.116 24 C -0.141 4.141 25 C -0.206 4.206 26 C -0.194 4.194 27 C -0.223 4.223 28 C -0.204 4.204 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.205 0.795 41 H 0.071 0.929 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.133 0.867 47 H 0.143 0.857 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.747 5.534 16.663 18.188 hybrid contribution -1.325 1.616 0.593 2.172 sum -6.072 7.149 17.256 19.640 Atomic orbital electron populations 1.23073 0.80943 1.04587 1.02139 1.47584 1.06066 1.05864 1.75682 1.21417 0.97623 0.84127 0.95122 1.23923 0.96735 0.93820 0.96581 0.91175 1.23168 0.97484 0.97621 0.99227 1.23583 1.02033 0.91221 0.95125 1.68970 1.14215 1.16551 1.13427 1.22432 0.95808 0.98577 0.94918 1.19566 0.88526 0.84666 0.83513 1.90543 1.13966 1.66330 1.73791 1.41925 1.08562 1.43420 1.27967 1.20530 0.94804 1.25361 1.09803 0.88458 1.26435 0.96965 0.98891 0.98968 1.70873 1.06066 1.39597 1.37995 0.83116 0.74373 0.75831 0.74861 1.21223 1.20952 1.20701 1.19340 0.87490 0.83266 0.76418 1.90726 1.13462 1.85870 1.45564 1.20931 0.89963 0.94076 1.06634 1.21349 0.89914 0.94561 1.08306 1.23062 0.96381 1.02984 0.98134 1.23041 0.99800 1.04268 0.92316 1.24078 0.96319 1.05842 0.96108 1.23297 1.00711 1.03723 0.92704 0.92608 0.87511 0.91637 0.89450 0.90793 0.91081 0.88829 0.89202 0.92260 0.93739 0.90170 0.79490 0.92917 0.87827 0.87212 0.90153 0.89679 0.86739 0.85684 0.87959 0.87823 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 8.48 59.85 0.51 0.80 16 2 N -0.62 -7.36 2.73 -181.57 -0.50 -7.86 16 3 C 0.14 1.60 5.60 -4.04 -0.02 1.57 16 4 C 0.00 0.01 3.37 -71.45 -0.24 -0.23 16 5 H 0.07 0.83 7.77 -51.93 -0.40 0.43 16 6 C -0.14 -1.66 8.00 -26.21 -0.21 -1.87 16 7 C 0.01 0.16 6.71 -7.57 -0.05 0.10 16 8 N -0.41 -7.25 4.40 -237.99 -1.05 -8.30 16 9 C 0.01 0.29 5.31 -4.97 -0.03 0.26 16 10 C 0.45 11.28 7.62 -10.99 -0.08 11.20 16 11 O -0.56 -16.26 15.34 5.55 0.09 -16.17 16 12 N -0.58 -15.17 5.28 -10.96 -0.06 -15.23 16 13 C -0.38 -10.89 9.68 -14.93 -0.14 -11.03 16 14 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 15 C -0.01 -0.30 5.50 -17.47 -0.10 -0.40 16 16 N -0.91 -25.87 13.68 55.50 0.76 -25.11 16 17 Si 1.09 25.11 29.92 -169.99 -5.09 20.03 16 18 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 21 C 0.55 8.29 6.34 -10.98 -0.07 8.22 16 22 O -0.48 -9.17 10.62 5.55 0.06 -9.11 16 23 C -0.11 -1.50 2.46 -155.66 -0.38 -1.88 16 24 C -0.12 -1.82 5.85 -90.62 -0.53 -2.35 16 25 C -0.17 -2.64 9.66 -26.73 -0.26 -2.90 16 26 C -0.16 -2.89 9.67 -26.74 -0.26 -3.15 16 27 C -0.19 -2.00 9.06 -26.70 -0.24 -2.24 16 28 C -0.17 -1.55 9.06 -26.69 -0.24 -1.79 16 29 H 0.06 0.49 6.77 -51.93 -0.35 0.14 16 30 H 0.11 0.79 2.43 -51.93 -0.13 0.66 16 31 H 0.06 0.41 7.83 -51.93 -0.41 0.00 16 32 H 0.09 1.14 7.25 -51.93 -0.38 0.77 16 33 H 0.07 0.60 7.86 -51.93 -0.41 0.19 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.14 7.94 -51.93 -0.41 0.73 16 36 H 0.09 1.69 8.13 -51.93 -0.42 1.27 16 37 H 0.06 0.96 7.70 -51.93 -0.40 0.56 16 38 H 0.04 0.78 7.56 -51.93 -0.39 0.38 16 39 H 0.08 1.48 7.66 -51.93 -0.40 1.09 16 40 H 0.37 9.07 6.73 -40.82 -0.27 8.80 16 41 H 0.26 7.15 6.77 -40.82 -0.28 6.88 16 42 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.11 1.88 6.07 -51.93 -0.32 1.56 16 44 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 46 H 0.11 2.61 6.49 -51.93 -0.34 2.28 16 47 H 0.13 1.21 3.95 -51.92 -0.21 1.00 16 48 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 49 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 50 H 0.11 0.84 6.06 -51.93 -0.31 0.52 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -35.62 386.66 -9.84 -45.46 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -7.53 Total: 16.15 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.35 Total: -5.69 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.84 Total: -56.49 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: 0.14 Total: -25.28 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.09 Total: 20.03 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.62 -9.84 -45.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235664965.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.583 kcal (2) G-P(sol) polarization free energy of solvation -35.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds