Wall clock time and date at job start Tue Mar 31 2020 18:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36937 * 120.00035 * 2 1 4 4 H 1.07995 * 120.00427 * 204.82187 * 3 2 1 5 5 C 1.38815 * 119.99790 * 24.82576 * 3 2 1 6 6 N 1.31622 * 120.00200 * 5.96588 * 5 3 2 7 7 Si 1.86798 * 120.00003 * 185.97341 * 5 3 2 8 8 H 1.48496 * 109.47242 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47308 * 119.99549 * 7 5 3 10 10 H 1.48507 * 109.46925 * 239.99448 * 7 5 3 11 11 C 1.46495 * 120.00107 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47184 * 270.00077 * 11 2 1 13 13 O 1.42902 * 109.47211 * 65.00044 * 12 11 2 14 14 C 1.42899 * 113.99959 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46927 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47016 * 64.99950 * 15 14 13 17 17 C 1.46500 * 119.99709 * 269.99664 * 16 15 14 18 18 C 1.34775 * 120.00065 * 90.00587 * 16 15 14 19 19 O 1.21689 * 120.00089 * 0.88338 * 18 16 15 20 20 C 1.46676 * 119.99848 * 180.89170 * 18 16 15 21 21 C 1.37763 * 126.22678 * 168.88310 * 20 18 16 22 22 C 1.40104 * 107.10766 * 179.97438 * 21 20 18 23 23 C 1.35573 * 108.07301 * 0.02562 * 22 21 20 24 24 N 1.36002 * 108.63843 * 359.93116 * 23 22 21 25 25 H 0.97008 * 125.63238 * 179.97438 * 24 23 22 26 26 C 1.51507 * 110.16666 * 179.97438 * 23 22 21 27 27 C 1.54408 * 105.02584 * 343.02587 * 26 23 22 28 28 C 1.51353 * 141.73896 * 179.97438 * 22 21 20 29 29 H 1.09001 * 109.47392 * 275.02823 * 1 2 3 30 30 H 1.09002 * 109.47229 * 35.03071 * 1 2 3 31 31 H 1.09008 * 109.47103 * 155.02912 * 1 2 3 32 32 H 0.96994 * 120.00285 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.47407 * 149.99880 * 11 2 1 34 34 H 1.08999 * 109.47476 * 30.00036 * 11 2 1 35 35 H 1.08996 * 109.47301 * 305.00111 * 12 11 2 36 36 H 1.09006 * 109.47220 * 184.99846 * 12 11 2 37 37 H 1.08998 * 109.47764 * 60.00145 * 14 13 12 38 38 H 1.09005 * 109.47361 * 299.99601 * 14 13 12 39 39 H 1.09002 * 109.47171 * 304.99527 * 15 14 13 40 40 H 1.08999 * 109.47167 * 184.99620 * 15 14 13 41 41 H 1.09002 * 109.47218 * 263.37899 * 17 16 15 42 42 H 1.08999 * 109.47210 * 23.38052 * 17 16 15 43 43 H 1.09003 * 109.47140 * 143.37880 * 17 16 15 44 44 H 1.07999 * 126.44350 * 359.96005 * 21 20 18 45 45 H 1.08996 * 110.32990 * 224.13459 * 26 23 22 46 46 H 1.08997 * 110.41752 * 101.95850 * 26 23 22 47 47 H 1.09008 * 110.91806 * 267.65878 * 27 26 23 48 48 H 1.09003 * 110.94767 * 144.03905 * 27 26 23 49 49 H 1.09000 * 110.33560 * 78.12641 * 28 22 21 50 50 H 1.09000 * 110.33698 * 315.98641 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1548 1.2292 -0.3926 5 6 1.5518 2.3325 0.5048 6 7 0.3749 2.2582 1.0896 7 14 2.4172 3.9810 0.3538 8 1 3.7177 3.7958 -0.3387 9 1 1.5686 4.9160 -0.4276 10 1 2.6537 4.5417 1.7085 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 8 1.2060 -1.9945 2.0805 14 6 1.3323 -2.4180 3.4394 15 6 -0.0567 -2.6926 4.0192 16 7 -0.6645 -3.8246 3.3154 17 6 -1.4786 -3.5919 2.1198 18 6 -0.4750 -5.0798 3.7679 19 8 0.1877 -5.2717 4.7703 20 6 -1.0674 -6.2147 3.0520 21 6 -0.7881 -7.5469 3.2647 22 6 -1.5743 -8.2812 2.3671 23 6 -2.3059 -7.4055 1.6349 24 7 -2.0078 -6.1427 2.0426 25 1 -2.3910 -5.3274 1.6827 26 6 -3.1763 -8.1519 0.6447 27 6 -2.5681 -9.5690 0.5658 28 6 -1.8802 -9.7011 1.9416 29 1 -0.3634 0.0901 1.0237 30 1 -0.3634 0.8415 -0.5899 31 1 -0.3634 -0.9317 -0.4339 32 1 -0.0430 3.0594 1.4419 33 1 3.1499 -1.1381 -0.5143 34 1 1.6085 -2.0281 -0.5147 35 1 2.9641 -0.9140 1.9811 36 1 3.0732 -2.6070 1.4426 37 1 1.8206 -1.6353 4.0201 38 1 1.9300 -3.3285 3.4822 39 1 -0.6831 -1.8091 3.8958 40 1 0.0325 -2.9295 5.0794 41 1 -2.5325 -3.5664 2.3971 42 1 -1.1983 -2.6400 1.6690 43 1 -1.3108 -4.3965 1.4038 44 1 -0.0936 -7.9494 3.9872 45 1 -3.1389 -7.6688 -0.3317 46 1 -4.2045 -8.2005 1.0032 47 1 -1.8386 -9.6350 -0.2415 48 1 -3.3476 -10.3215 0.4460 49 1 -2.5529 -10.1743 2.6569 50 1 -0.9588 -10.2763 1.8513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264111541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:30 Heat of formation + Delta-G solvation = 17.785206 kcal Electronic energy + Delta-G solvation = -29549.702659 eV Core-core repulsion = 25579.853244 eV Total energy + Delta-G solvation = -3969.849415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.85274 -39.53161 -37.48634 -36.27470 -35.71339 -34.96356 -31.64257 -31.25664 -30.30894 -28.28336 -27.80763 -27.55331 -26.43214 -25.75126 -23.71210 -22.95608 -21.73781 -21.04342 -20.31951 -19.61865 -19.36058 -17.40695 -16.82503 -16.36946 -16.26490 -15.98857 -15.59778 -15.52572 -15.14462 -14.59213 -14.15483 -13.90544 -13.65917 -13.54667 -13.33395 -13.20796 -13.14328 -13.02516 -12.95629 -12.36804 -12.26141 -12.06114 -11.98320 -11.56732 -11.45507 -11.42742 -11.35856 -11.20486 -10.97544 -10.84348 -10.76212 -10.51278 -10.09185 -10.06465 -9.90949 -9.82564 -8.98187 -8.92560 -8.68937 -8.51685 -8.06381 -6.67186 -5.68572 -3.16383 1.37048 2.49663 2.67667 2.94790 3.34581 3.37102 3.44379 3.45926 4.24442 4.27043 4.35575 4.51498 4.54059 4.69829 4.89044 4.96310 5.12575 5.13732 5.29241 5.36362 5.41029 5.41266 5.43325 5.43629 5.58557 5.59692 5.66552 5.71087 5.73925 5.82290 5.87112 5.90878 5.96275 6.07145 6.12507 6.20226 6.26564 6.45385 6.56812 6.63475 6.77540 6.86238 6.88902 7.22658 7.32729 7.48381 7.80802 7.86426 7.93048 8.09971 8.44836 9.29225 9.91574 10.42612 11.35411 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.002437 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.233652 B =11485.375267 C =12078.025429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.597 5.597 3 C -0.254 4.254 4 H 0.066 0.934 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.154 3.846 12 C 0.045 3.955 13 O -0.368 6.368 14 C 0.047 3.953 15 C 0.122 3.878 16 N -0.602 5.602 17 C 0.061 3.939 18 C 0.588 3.412 19 O -0.535 6.535 20 C -0.041 4.041 21 C -0.086 4.086 22 C -0.199 4.199 23 C 0.012 3.988 24 N -0.529 5.529 25 H 0.420 0.580 26 C -0.042 4.042 27 C -0.115 4.115 28 C -0.049 4.049 29 H 0.032 0.968 30 H 0.037 0.963 31 H -0.010 1.010 32 H 0.250 0.750 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.022 0.978 37 H 0.055 0.945 38 H 0.042 0.958 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.145 0.855 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.097 -21.581 0.792 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.320 5.320 3 C -0.384 4.384 4 H 0.084 0.916 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.733 3.267 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.026 3.974 12 C -0.035 4.035 13 O -0.287 6.287 14 C -0.031 4.031 15 C 0.000 4.000 16 N -0.334 5.334 17 C -0.083 4.083 18 C 0.378 3.622 19 O -0.412 6.412 20 C -0.152 4.152 21 C -0.113 4.113 22 C -0.206 4.206 23 C -0.106 4.106 24 N -0.132 5.132 25 H 0.266 0.734 26 C -0.080 4.080 27 C -0.153 4.153 28 C -0.087 4.087 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.008 0.992 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.124 0.876 43 H 0.087 0.913 44 H 0.163 0.837 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.090 0.910 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.094 -21.277 1.243 22.799 hybrid contribution 0.578 1.555 0.047 1.660 sum -7.516 -19.722 1.291 21.145 Atomic orbital electron populations 1.20700 0.82323 0.94434 0.99322 1.43849 1.02089 1.00217 1.85833 1.19248 0.99216 0.86133 1.33781 0.91602 1.25099 0.97426 0.98552 0.98447 1.70072 1.16092 1.27130 1.41754 0.86216 0.78958 0.84350 0.77220 1.20409 1.21712 1.21767 1.20879 0.96351 0.88741 0.91426 1.23444 0.85282 0.96769 0.97983 1.87902 1.30347 1.87277 1.23195 1.22770 0.96649 0.98134 0.85536 1.21611 0.93789 0.88152 0.96454 1.47628 1.51115 1.06054 1.28595 1.22227 0.94015 1.04932 0.87082 1.17091 0.80087 0.81392 0.83653 1.90818 1.40894 1.84414 1.25093 1.20317 1.01590 0.95151 0.98180 1.20635 1.00879 0.89587 1.00153 1.20348 1.02961 0.95677 1.01574 1.21430 1.02653 0.84430 1.02123 1.42768 1.33608 1.07431 1.29409 0.73447 1.20701 0.97184 0.93947 0.96180 1.22325 1.00048 0.95208 0.97722 1.20455 1.00265 0.92228 0.95730 0.94932 0.94468 0.99187 0.93987 0.92479 0.94047 0.93431 0.95946 0.92724 0.93974 0.89019 0.88624 0.92714 0.87611 0.91318 0.83729 0.90742 0.89964 0.90651 0.90161 0.90991 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.35 8.60 59.84 0.51 4.87 16 2 N -0.60 -15.02 2.89 -181.13 -0.52 -15.55 16 3 C -0.25 -6.96 9.67 -15.06 -0.15 -7.11 16 4 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 5 C 0.00 0.08 5.23 -17.43 -0.09 -0.01 16 6 N -0.91 -26.17 10.46 55.49 0.58 -25.59 16 7 Si 0.90 21.84 29.56 -169.99 -5.02 16.81 16 8 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 C 0.15 3.19 6.11 -4.05 -0.02 3.17 16 12 C 0.04 0.87 6.28 37.16 0.23 1.10 16 13 O -0.37 -7.06 8.85 -35.23 -0.31 -7.37 16 14 C 0.05 0.78 6.28 37.16 0.23 1.02 16 15 C 0.12 1.78 5.79 -4.04 -0.02 1.76 16 16 N -0.60 -8.43 2.84 -183.12 -0.52 -8.95 16 17 C 0.06 0.70 8.64 59.85 0.52 1.22 16 18 C 0.59 9.02 7.64 -12.85 -0.10 8.92 16 19 O -0.53 -9.65 16.47 5.20 0.09 -9.56 16 20 C -0.04 -0.55 6.65 -81.79 -0.54 -1.09 16 21 C -0.09 -1.12 10.67 -39.06 -0.42 -1.54 16 22 C -0.20 -2.21 6.89 -104.55 -0.72 -2.93 16 23 C 0.01 0.12 8.02 -81.30 -0.65 -0.53 16 24 N -0.53 -5.76 5.07 -5.24 -0.03 -5.78 16 25 H 0.42 3.75 4.97 -40.82 -0.20 3.54 16 26 C -0.04 -0.28 6.79 -26.75 -0.18 -0.46 16 27 C -0.12 -0.68 7.12 -25.27 -0.18 -0.85 16 28 C -0.05 -0.38 6.78 -26.84 -0.18 -0.56 16 29 H 0.03 0.86 7.34 -51.93 -0.38 0.48 16 30 H 0.04 0.99 7.26 -51.93 -0.38 0.61 16 31 H -0.01 -0.23 7.84 -51.92 -0.41 -0.63 16 32 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.06 1.12 8.04 -51.93 -0.42 0.71 16 34 H 0.04 0.80 7.86 -51.93 -0.41 0.39 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 40 H 0.10 1.34 7.41 -51.93 -0.38 0.96 16 41 H 0.05 0.50 7.72 -51.93 -0.40 0.10 16 42 H 0.11 1.43 7.26 -51.93 -0.38 1.06 16 43 H 0.07 0.73 5.20 -51.93 -0.27 0.46 16 44 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 48 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 399.21 15.07 6.02 6.02 Total: -1.00 -33.38 399.21 -9.73 -43.11 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.24 Total: -0.09 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -1.76 Total: 6.96 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.49 Total: -55.87 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.23 Total: -16.94 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.38 -9.73 -43.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264111541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.895 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds