Wall clock time and date at job start Tue Mar 31 2020 18:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36937 * 120.00035 * 2 1 4 4 H 1.07995 * 120.00427 * 204.82187 * 3 2 1 5 5 C 1.38815 * 119.99790 * 24.82576 * 3 2 1 6 6 N 1.31622 * 120.00200 * 5.96588 * 5 3 2 7 7 Si 1.86798 * 120.00003 * 185.97341 * 5 3 2 8 8 H 1.48496 * 109.47242 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47308 * 119.99549 * 7 5 3 10 10 H 1.48507 * 109.46925 * 239.99448 * 7 5 3 11 11 C 1.46495 * 120.00107 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47184 * 270.00077 * 11 2 1 13 13 O 1.42902 * 109.47211 * 65.00044 * 12 11 2 14 14 C 1.42899 * 113.99959 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46927 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47016 * 64.99950 * 15 14 13 17 17 C 1.46500 * 119.99709 * 269.99664 * 16 15 14 18 18 C 1.34775 * 120.00065 * 90.00587 * 16 15 14 19 19 O 1.21689 * 120.00089 * 0.88338 * 18 16 15 20 20 C 1.46676 * 119.99848 * 180.89170 * 18 16 15 21 21 C 1.37763 * 126.22678 * 168.88310 * 20 18 16 22 22 C 1.40104 * 107.10766 * 179.97438 * 21 20 18 23 23 C 1.35573 * 108.07301 * 0.02562 * 22 21 20 24 24 N 1.36002 * 108.63843 * 359.93116 * 23 22 21 25 25 H 0.97008 * 125.63238 * 179.97438 * 24 23 22 26 26 C 1.51507 * 110.16666 * 179.97438 * 23 22 21 27 27 C 1.54408 * 105.02584 * 343.02587 * 26 23 22 28 28 C 1.51353 * 141.73896 * 179.97438 * 22 21 20 29 29 H 1.09001 * 109.47392 * 275.02823 * 1 2 3 30 30 H 1.09002 * 109.47229 * 35.03071 * 1 2 3 31 31 H 1.09008 * 109.47103 * 155.02912 * 1 2 3 32 32 H 0.96994 * 120.00285 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.47407 * 149.99880 * 11 2 1 34 34 H 1.08999 * 109.47476 * 30.00036 * 11 2 1 35 35 H 1.08996 * 109.47301 * 305.00111 * 12 11 2 36 36 H 1.09006 * 109.47220 * 184.99846 * 12 11 2 37 37 H 1.08998 * 109.47764 * 60.00145 * 14 13 12 38 38 H 1.09005 * 109.47361 * 299.99601 * 14 13 12 39 39 H 1.09002 * 109.47171 * 304.99527 * 15 14 13 40 40 H 1.08999 * 109.47167 * 184.99620 * 15 14 13 41 41 H 1.09002 * 109.47218 * 263.37899 * 17 16 15 42 42 H 1.08999 * 109.47210 * 23.38052 * 17 16 15 43 43 H 1.09003 * 109.47140 * 143.37880 * 17 16 15 44 44 H 1.07999 * 126.44350 * 359.96005 * 21 20 18 45 45 H 1.08996 * 110.32990 * 224.13459 * 26 23 22 46 46 H 1.08997 * 110.41752 * 101.95850 * 26 23 22 47 47 H 1.09008 * 110.91806 * 267.65878 * 27 26 23 48 48 H 1.09003 * 110.94767 * 144.03905 * 27 26 23 49 49 H 1.09000 * 110.33560 * 78.12641 * 28 22 21 50 50 H 1.09000 * 110.33698 * 315.98641 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1548 1.2292 -0.3926 5 6 1.5518 2.3325 0.5048 6 7 0.3749 2.2582 1.0896 7 14 2.4172 3.9810 0.3538 8 1 3.7177 3.7958 -0.3387 9 1 1.5686 4.9160 -0.4276 10 1 2.6537 4.5417 1.7085 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 8 1.2060 -1.9945 2.0805 14 6 1.3323 -2.4180 3.4394 15 6 -0.0567 -2.6926 4.0192 16 7 -0.6645 -3.8246 3.3154 17 6 -1.4786 -3.5919 2.1198 18 6 -0.4750 -5.0798 3.7679 19 8 0.1877 -5.2717 4.7703 20 6 -1.0674 -6.2147 3.0520 21 6 -0.7881 -7.5469 3.2647 22 6 -1.5743 -8.2812 2.3671 23 6 -2.3059 -7.4055 1.6349 24 7 -2.0078 -6.1427 2.0426 25 1 -2.3910 -5.3274 1.6827 26 6 -3.1763 -8.1519 0.6447 27 6 -2.5681 -9.5690 0.5658 28 6 -1.8802 -9.7011 1.9416 29 1 -0.3634 0.0901 1.0237 30 1 -0.3634 0.8415 -0.5899 31 1 -0.3634 -0.9317 -0.4339 32 1 -0.0430 3.0594 1.4419 33 1 3.1499 -1.1381 -0.5143 34 1 1.6085 -2.0281 -0.5147 35 1 2.9641 -0.9140 1.9811 36 1 3.0732 -2.6070 1.4426 37 1 1.8206 -1.6353 4.0201 38 1 1.9300 -3.3285 3.4822 39 1 -0.6831 -1.8091 3.8958 40 1 0.0325 -2.9295 5.0794 41 1 -2.5325 -3.5664 2.3971 42 1 -1.1983 -2.6400 1.6690 43 1 -1.3108 -4.3965 1.4038 44 1 -0.0936 -7.9494 3.9872 45 1 -3.1389 -7.6688 -0.3317 46 1 -4.2045 -8.2005 1.0032 47 1 -1.8386 -9.6350 -0.2415 48 1 -3.3476 -10.3215 0.4460 49 1 -2.5529 -10.1743 2.6569 50 1 -0.9588 -10.2763 1.8513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264111541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:29 Heat of formation + Delta-G solvation = -1.648578 kcal Electronic energy + Delta-G solvation = -29550.545371 eV Core-core repulsion = 25579.853244 eV Total energy + Delta-G solvation = -3970.692127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.72905 -40.64795 -38.99209 -37.30474 -37.01351 -36.38836 -33.49274 -32.21521 -31.62095 -29.83175 -28.76207 -28.31273 -27.80833 -27.41646 -24.94956 -24.63810 -22.70224 -22.14400 -21.86330 -20.56951 -20.20476 -18.79745 -18.35460 -17.67499 -17.45974 -17.04434 -16.84753 -16.70844 -16.38525 -16.24101 -15.44824 -15.29204 -15.14714 -14.68772 -14.56291 -14.48065 -14.17410 -14.03159 -13.86983 -13.59104 -13.54230 -13.27131 -13.00670 -12.97647 -12.77768 -12.69221 -12.62228 -12.46695 -12.31878 -12.24936 -12.00171 -11.94963 -11.80395 -11.72267 -11.68496 -11.25768 -10.63051 -10.43547 -10.00070 -9.72003 -8.90949 -8.70472 -7.78333 -5.27958 0.36955 1.45367 1.46914 1.56384 1.63233 1.72743 1.97098 2.26942 2.51405 2.85416 3.34897 3.41879 3.65424 3.76004 3.84226 3.93282 4.03101 4.11084 4.27343 4.29245 4.33752 4.36626 4.43259 4.46849 4.50640 4.55850 4.60818 4.62815 4.72408 4.76564 4.88157 4.92210 4.96959 4.97324 5.02642 5.11441 5.14545 5.17409 5.27593 5.34834 5.42297 5.45782 5.67783 5.76708 5.87992 5.97095 6.20593 6.36759 6.40576 6.46417 6.94772 7.20897 7.92388 8.37528 9.24109 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.002437 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.233652 B =11485.375267 C =12078.025429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.613 5.613 3 C -0.261 4.261 4 H 0.069 0.931 5 C -0.051 4.051 6 N -0.933 5.933 7 Si 0.965 3.035 8 H -0.267 1.267 9 H -0.292 1.292 10 H -0.295 1.295 11 C 0.151 3.849 12 C 0.052 3.948 13 O -0.380 6.380 14 C 0.051 3.949 15 C 0.127 3.873 16 N -0.601 5.601 17 C 0.062 3.938 18 C 0.585 3.415 19 O -0.574 6.574 20 C -0.067 4.067 21 C -0.102 4.102 22 C -0.220 4.220 23 C 0.022 3.978 24 N -0.522 5.522 25 H 0.428 0.572 26 C -0.042 4.042 27 C -0.108 4.108 28 C -0.051 4.051 29 H 0.008 0.992 30 H 0.008 0.992 31 H 0.021 0.979 32 H 0.245 0.755 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.022 0.978 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.039 0.961 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.137 0.863 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.078 0.922 48 H 0.106 0.894 49 H 0.080 0.920 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 -23.169 -0.884 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.336 5.336 3 C -0.392 4.392 4 H 0.087 0.913 5 C -0.246 4.246 6 N -0.580 5.580 7 Si 0.793 3.207 8 H -0.192 1.192 9 H -0.219 1.219 10 H -0.222 1.222 11 C 0.025 3.975 12 C -0.027 4.027 13 O -0.299 6.299 14 C -0.027 4.027 15 C 0.004 3.996 16 N -0.332 5.332 17 C -0.080 4.080 18 C 0.377 3.623 19 O -0.454 6.454 20 C -0.179 4.179 21 C -0.129 4.129 22 C -0.226 4.226 23 C -0.098 4.098 24 N -0.126 5.126 25 H 0.275 0.725 26 C -0.080 4.080 27 C -0.146 4.146 28 C -0.089 4.089 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.155 0.845 45 H 0.108 0.892 46 H 0.119 0.881 47 H 0.096 0.904 48 H 0.124 0.876 49 H 0.099 0.901 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.948 -22.875 -0.467 24.567 hybrid contribution 0.837 1.924 0.536 2.165 sum -8.111 -20.952 0.069 22.467 Atomic orbital electron populations 1.20391 0.82424 0.94674 0.97485 1.44068 1.02380 1.01197 1.85968 1.19561 0.99341 0.87241 1.33021 0.91300 1.25818 0.98247 1.01751 0.98829 1.70239 1.17328 1.27497 1.42907 0.85237 0.78320 0.80341 0.76757 1.19150 1.21865 1.22215 1.21043 0.96748 0.87325 0.92394 1.23232 0.85621 0.97080 0.96779 1.87882 1.30287 1.87372 1.24386 1.22818 0.97848 0.97696 0.84387 1.21520 0.92863 0.88554 0.96655 1.47679 1.51010 1.05502 1.29037 1.22319 0.95131 1.04233 0.86355 1.17356 0.79657 0.82004 0.83325 1.90781 1.42800 1.85011 1.26820 1.20048 1.03459 0.94530 0.99845 1.20816 1.01313 0.90153 1.00662 1.20785 1.02740 0.97813 1.01251 1.22191 1.01984 0.83781 1.01805 1.42699 1.32949 1.08298 1.28689 0.72481 1.20927 0.97351 0.93783 0.95892 1.22371 1.00599 0.95320 0.96306 1.20583 1.00853 0.90258 0.97168 0.97411 0.97300 0.96100 0.94555 0.91358 0.92209 0.95958 0.93235 0.93064 0.94257 0.88837 0.88264 0.89957 0.89407 0.90280 0.84537 0.89187 0.88119 0.90377 0.87607 0.90144 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 9.60 8.60 127.77 1.10 10.70 16 2 N -0.61 -30.53 2.89 -726.96 -2.10 -32.63 16 3 C -0.26 -14.25 9.67 84.03 0.81 -13.43 16 4 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 5 C -0.05 -2.87 5.23 84.86 0.44 -2.42 16 6 N -0.93 -54.79 10.46 21.65 0.23 -54.56 16 7 Si 0.96 45.09 29.56 68.60 2.03 47.11 16 8 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 9 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 11 C 0.15 6.05 6.11 86.38 0.53 6.58 16 12 C 0.05 1.99 6.28 71.98 0.45 2.44 16 13 O -0.38 -14.46 8.85 -148.98 -1.32 -15.78 16 14 C 0.05 1.69 6.28 71.98 0.45 2.14 16 15 C 0.13 3.74 5.79 86.38 0.50 4.24 16 16 N -0.60 -16.78 2.84 -851.50 -2.42 -19.20 16 17 C 0.06 1.37 8.64 127.77 1.10 2.48 16 18 C 0.59 18.25 7.64 86.45 0.66 18.91 16 19 O -0.57 -21.48 16.47 -4.31 -0.07 -21.55 16 20 C -0.07 -1.81 6.65 40.24 0.27 -1.55 16 21 C -0.10 -2.71 10.67 22.61 0.24 -2.47 16 22 C -0.22 -4.61 6.89 -19.82 -0.14 -4.75 16 23 C 0.02 0.40 8.02 41.55 0.33 0.73 16 24 N -0.52 -10.60 5.07 -170.49 -0.86 -11.47 16 25 H 0.43 6.80 4.97 -92.70 -0.46 6.34 16 26 C -0.04 -0.41 6.79 30.58 0.21 -0.20 16 27 C -0.11 -0.88 7.12 31.54 0.22 -0.65 16 28 C -0.05 -0.68 6.78 30.53 0.21 -0.47 16 29 H 0.01 0.41 7.34 -2.39 -0.02 0.39 16 30 H 0.01 0.45 7.26 -2.39 -0.02 0.43 16 31 H 0.02 0.87 7.84 -2.38 -0.02 0.85 16 32 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 33 H 0.07 2.56 8.04 -2.39 -0.02 2.54 16 34 H 0.06 2.17 7.86 -2.39 -0.02 2.15 16 35 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.09 2.72 8.07 -2.39 -0.02 2.70 16 40 H 0.10 2.86 7.41 -2.39 -0.02 2.84 16 41 H 0.08 1.36 7.72 -2.39 -0.02 1.34 16 42 H 0.09 2.32 7.26 -2.39 -0.02 2.30 16 43 H 0.08 1.57 5.20 -2.39 -0.01 1.56 16 44 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 45 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 48 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 50 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -72.75 399.21 3.35 -69.39 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.47 Total: 16.41 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 7.40 Total: 22.26 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -5.15 Total: -117.85 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.39 Total: -37.32 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -72.75 3.35 -69.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264111541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.745 kcal (2) G-P(sol) polarization free energy of solvation -72.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds