Wall clock time and date at job start Tue Mar 31 2020 18:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46504 * 120.00241 * 2 1 4 4 C 1.52999 * 109.46712 * 270.00241 * 3 2 1 5 5 N 1.46900 * 109.47003 * 179.97438 * 4 3 2 6 6 C 1.46904 * 111.00095 * 294.30041 * 5 4 3 7 7 C 1.53234 * 109.34383 * 172.74634 * 6 5 4 8 8 N 1.47080 * 108.52206 * 53.82863 * 7 6 5 9 9 C 1.36931 * 120.88368 * 128.83700 * 8 7 6 10 10 H 1.08009 * 119.99862 * 333.48667 * 9 8 7 11 11 C 1.38813 * 120.00564 * 153.48714 * 9 8 7 12 12 N 1.31609 * 120.00490 * 159.44138 * 11 9 8 13 13 Si 1.86800 * 119.99443 * 339.44495 * 11 9 8 14 14 H 1.48501 * 109.47230 * 91.97766 * 13 11 9 15 15 H 1.48502 * 109.46918 * 211.97356 * 13 11 9 16 16 H 1.48502 * 109.47493 * 331.97166 * 13 11 9 17 17 C 1.47081 * 118.23677 * 308.81488 * 8 7 6 18 18 C 1.46896 * 111.00154 * 169.99930 * 5 4 3 19 19 C 1.34780 * 120.00153 * 179.97438 * 2 1 3 20 20 O 1.21276 * 120.00085 * 180.02562 * 19 2 1 21 21 C 1.50700 * 119.99764 * 0.02562 * 19 2 1 22 22 C 1.53003 * 109.46824 * 180.02562 * 21 19 2 23 23 C 1.50700 * 109.46824 * 179.97438 * 22 21 19 24 24 C 1.41380 * 126.58647 * 89.99549 * 23 22 21 25 25 C 1.34512 * 106.84723 * 179.97438 * 24 23 22 26 26 O 1.34302 * 108.41851 * 359.97438 * 25 24 23 27 27 C 1.34308 * 109.47624 * 359.77596 * 26 25 24 28 28 H 1.08999 * 109.47278 * 269.99972 * 1 2 3 29 29 H 1.08998 * 109.47369 * 30.00473 * 1 2 3 30 30 H 1.09003 * 109.47108 * 150.00300 * 1 2 3 31 31 H 1.09001 * 109.46992 * 29.99339 * 3 2 1 32 32 H 1.08996 * 109.47266 * 149.99743 * 3 2 1 33 33 H 1.09005 * 109.47362 * 299.99212 * 4 3 2 34 34 H 1.08996 * 109.47661 * 59.99745 * 4 3 2 35 35 H 1.09003 * 109.48749 * 292.70678 * 6 5 4 36 36 H 1.08998 * 109.49246 * 52.78148 * 6 5 4 37 37 H 1.09000 * 109.62887 * 294.11894 * 7 6 5 38 38 H 1.08995 * 109.62800 * 173.53844 * 7 6 5 39 39 H 0.96998 * 120.00426 * 180.02562 * 12 11 9 40 40 H 1.08999 * 109.63000 * 291.47897 * 17 8 7 41 41 H 1.09002 * 109.78667 * 170.98618 * 17 8 7 42 42 H 1.08998 * 109.49196 * 307.20838 * 18 5 4 43 43 H 1.08995 * 109.49498 * 67.29367 * 18 5 4 44 44 H 1.08991 * 109.47611 * 59.99717 * 21 19 2 45 45 H 1.09004 * 109.47003 * 299.99135 * 21 19 2 46 46 H 1.08992 * 109.47623 * 59.99919 * 22 21 19 47 47 H 1.08999 * 109.46872 * 299.98999 * 22 21 19 48 48 H 1.08004 * 126.57625 * 359.97438 * 24 23 22 49 49 H 1.07995 * 125.78894 * 179.97438 * 25 24 23 50 50 H 1.08001 * 125.79051 * 180.23277 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7103 -1.4425 5 7 3.1864 2.9828 -1.4426 6 6 2.3667 4.0635 -0.8784 7 6 3.2235 5.3251 -0.7286 8 7 3.8415 5.6272 -2.0286 9 6 3.7457 6.8775 -2.5787 10 1 2.9106 7.5151 -2.3285 11 6 4.7218 7.3256 -3.4581 12 7 4.4577 8.3132 -4.2869 13 14 6.4103 6.5266 -3.4651 14 1 6.4321 5.4240 -4.4595 15 1 7.4353 7.5388 -3.8259 16 1 6.7060 5.9821 -2.1155 17 6 4.5656 4.5509 -2.7218 18 6 3.6559 3.3197 -2.7931 19 6 2.1389 -1.1672 0.0005 20 8 3.3516 -1.1672 0.0010 21 6 1.3853 -2.4723 0.0005 22 6 2.3796 -3.6352 0.0018 23 6 1.6261 -4.9403 0.0024 24 6 1.2052 -5.6709 -1.1324 25 6 0.5725 -6.7673 -0.6776 26 8 0.5882 -6.7400 0.6651 27 6 1.2305 -5.6370 1.0830 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1384 0.5138 33 1 3.0416 0.9507 -1.9564 34 1 1.5000 1.8407 -1.9564 35 1 1.5287 4.2698 -1.5442 36 1 1.9897 3.7617 0.0988 37 1 4.0012 5.1533 0.0155 38 1 2.5948 6.1600 -0.4192 39 1 5.1397 8.6261 -4.9017 40 1 5.4723 4.3047 -2.1693 41 1 4.8269 4.8720 -3.7302 42 1 4.2139 2.4786 -3.2046 43 1 2.8000 3.5364 -3.4322 44 1 0.7590 -2.5303 -0.8896 45 1 0.7584 -2.5299 0.8904 46 1 3.0056 -3.5771 0.8922 47 1 3.0068 -3.5779 -0.8878 48 1 1.3616 -5.4005 -2.1663 49 1 0.1273 -7.5386 -1.2885 50 1 1.3984 -5.3556 2.1121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267606271.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:24 Heat of formation + Delta-G solvation = -3.906082 kcal Electronic energy + Delta-G solvation = -28602.647740 eV Core-core repulsion = 24631.857720 eV Total energy + Delta-G solvation = -3970.790020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.41765 -41.04758 -39.87837 -37.21059 -35.98706 -35.79953 -33.73337 -32.54692 -32.07423 -30.95821 -29.89620 -28.14587 -27.31585 -25.68393 -25.10266 -24.10806 -22.89466 -22.44630 -21.10510 -21.02225 -20.02310 -18.86331 -18.53335 -17.70279 -17.57340 -17.18992 -16.86757 -16.74306 -16.16308 -15.95729 -15.84496 -15.54952 -15.47468 -15.28049 -14.86714 -14.55074 -14.40472 -14.16941 -13.90311 -13.80094 -13.64707 -13.43381 -13.41120 -13.25174 -13.09654 -13.01541 -12.83205 -12.65125 -12.39728 -12.23456 -11.98908 -11.87696 -11.74943 -11.65165 -11.44454 -10.90571 -10.75780 -10.52445 -9.74518 -9.40869 -9.37152 -8.92492 -8.18913 -5.49938 0.90377 1.27726 1.39624 1.49243 1.62369 1.65418 2.00893 2.35679 2.39300 2.92958 3.06104 3.33672 3.54721 3.88234 3.92758 4.01430 4.05296 4.10690 4.18078 4.19350 4.27908 4.29976 4.39523 4.42162 4.42666 4.48209 4.55823 4.64672 4.69181 4.70041 4.76392 4.81279 4.85849 4.87760 4.92577 4.97447 4.97991 5.04063 5.13177 5.24333 5.27442 5.36763 5.49768 5.62483 5.80680 6.02610 6.07602 6.17353 6.24484 6.40262 6.87135 7.18681 7.58642 8.02145 9.00755 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028173 B = 0.001866 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.616795 B =15002.173106 C =15444.629099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.616 5.616 3 C 0.125 3.875 4 C 0.054 3.946 5 N -0.541 5.541 6 C 0.051 3.949 7 C 0.144 3.856 8 N -0.623 5.623 9 C -0.247 4.247 10 H 0.057 0.943 11 C -0.034 4.034 12 N -0.955 5.955 13 Si 0.944 3.056 14 H -0.275 1.275 15 H -0.309 1.309 16 H -0.267 1.267 17 C 0.126 3.874 18 C 0.056 3.944 19 C 0.504 3.496 20 O -0.584 6.584 21 C -0.119 4.119 22 C -0.030 4.030 23 C -0.192 4.192 24 C -0.229 4.229 25 C -0.041 4.041 26 O -0.191 6.191 27 C -0.043 4.043 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.027 0.973 36 H 0.105 0.895 37 H 0.035 0.965 38 H 0.066 0.934 39 H 0.262 0.738 40 H 0.031 0.969 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.028 0.972 44 H 0.110 0.890 45 H 0.117 0.883 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.154 0.846 49 H 0.231 0.769 50 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.884 -31.199 11.417 36.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.348 5.348 3 C 0.001 3.999 4 C -0.075 4.075 5 N -0.266 5.266 6 C -0.078 4.078 7 C 0.019 3.981 8 N -0.348 5.348 9 C -0.376 4.376 10 H 0.075 0.925 11 C -0.229 4.229 12 N -0.601 5.601 13 Si 0.773 3.227 14 H -0.202 1.202 15 H -0.237 1.237 16 H -0.192 1.192 17 C 0.001 3.999 18 C -0.073 4.073 19 C 0.294 3.706 20 O -0.464 6.464 21 C -0.159 4.159 22 C -0.068 4.068 23 C -0.194 4.194 24 C -0.248 4.248 25 C -0.108 4.108 26 O -0.087 6.087 27 C -0.110 4.110 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.123 0.877 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.046 0.954 44 H 0.128 0.872 45 H 0.135 0.865 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.172 0.828 49 H 0.248 0.752 50 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -12.950 -31.353 11.814 35.920 hybrid contribution 0.565 0.709 -1.278 1.567 sum -12.385 -30.644 10.536 34.690 Atomic orbital electron populations 1.22110 0.76797 1.04686 1.03584 1.47998 1.08601 1.05254 1.72995 1.21302 0.97862 0.85091 0.95596 1.22315 0.96436 0.90727 0.98033 1.61797 1.40046 1.02996 1.21795 1.22580 0.93951 0.91164 1.00085 1.21222 0.95259 0.95590 0.86003 1.44560 1.63747 1.06864 1.19633 1.18894 1.04438 0.92153 1.22162 0.92511 1.25837 1.01196 0.97628 0.98194 1.69944 1.34892 1.32200 1.23082 0.85965 0.81450 0.76698 0.78540 1.20159 1.23741 1.19229 1.21412 0.94342 0.88210 0.95928 1.22390 0.98097 0.97537 0.89295 1.21390 0.87726 0.86648 0.74833 1.90718 1.16231 1.88045 1.51388 1.21656 0.98871 0.89087 1.06267 1.19573 0.95684 0.88526 1.03048 1.20527 1.05783 0.99534 0.93517 1.22028 1.05135 0.97173 1.00470 1.24645 1.03976 1.01672 0.80530 1.84088 1.60778 1.40319 1.23548 1.24377 0.99453 0.86409 1.00793 0.90506 0.90361 0.89024 0.88433 0.91344 0.92287 0.94222 0.95515 0.87703 0.94733 0.91529 0.92922 0.95127 0.92802 0.89922 0.95410 0.87194 0.86473 0.91142 0.92091 0.82846 0.75229 0.75942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 10.24 127.77 1.31 1.89 16 2 N -0.62 -10.52 2.87 -846.77 -2.43 -12.96 16 3 C 0.12 2.69 5.34 86.38 0.46 3.15 16 4 C 0.05 1.38 5.29 86.30 0.46 1.84 16 5 N -0.54 -17.33 4.63 -895.25 -4.14 -21.48 16 6 C 0.05 1.57 5.46 86.38 0.47 2.04 16 7 C 0.14 5.61 6.69 86.35 0.58 6.18 16 8 N -0.62 -30.26 2.82 -698.12 -1.97 -32.23 16 9 C -0.25 -14.25 10.08 84.03 0.85 -13.40 16 10 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 11 C -0.03 -2.01 5.24 84.86 0.44 -1.56 16 12 N -0.95 -60.68 13.97 21.65 0.30 -60.38 16 13 Si 0.94 48.18 24.31 68.60 1.67 49.85 16 14 H -0.27 -13.27 6.58 99.48 0.65 -12.61 16 15 H -0.31 -15.87 7.11 99.48 0.71 -15.17 16 16 H -0.27 -13.41 6.61 99.48 0.66 -12.75 16 17 C 0.13 5.68 4.35 86.35 0.38 6.05 16 18 C 0.06 2.06 5.62 86.39 0.49 2.55 16 19 C 0.50 10.27 7.67 87.66 0.67 10.94 16 20 O -0.58 -17.69 15.56 -3.02 -0.05 -17.74 16 21 C -0.12 -1.47 4.23 29.85 0.13 -1.34 16 22 C -0.03 -0.47 5.02 29.85 0.15 -0.32 16 23 C -0.19 -2.67 5.42 -19.94 -0.11 -2.78 16 24 C -0.23 -2.94 10.87 22.19 0.24 -2.70 16 25 C -0.04 -0.43 12.09 66.97 0.81 0.38 16 26 O -0.19 -2.58 10.65 -2.52 -0.03 -2.60 16 27 C -0.04 -0.51 12.01 66.97 0.80 0.29 16 28 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.08 0.63 8.07 -2.39 -0.02 0.61 16 30 H 0.09 0.43 6.44 -2.39 -0.02 0.41 16 31 H 0.10 1.70 6.33 -2.39 -0.02 1.68 16 32 H 0.07 1.86 7.42 -2.39 -0.02 1.84 16 33 H 0.06 1.70 7.97 -2.38 -0.02 1.68 16 34 H 0.04 0.95 8.12 -2.39 -0.02 0.93 16 35 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 2.44 6.16 -2.39 -0.01 2.43 16 37 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 2.53 7.95 -2.39 -0.02 2.51 16 39 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 40 H 0.03 1.40 6.94 -2.39 -0.02 1.38 16 41 H 0.05 2.63 4.61 -2.39 -0.01 2.62 16 42 H 0.08 2.72 7.99 -2.39 -0.02 2.71 16 43 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.11 1.02 7.40 -2.39 -0.02 1.01 16 45 H 0.12 0.89 8.11 -2.38 -0.02 0.87 16 46 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 47 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 48 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 49 H 0.23 0.64 8.06 -2.91 -0.02 0.62 16 50 H 0.22 1.27 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -78.52 393.55 2.29 -76.23 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 0.82 Total: 8.09 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 8.12 Total: 13.21 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -8.24 Total: -127.04 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.07 Total: -20.34 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.67 Total: 49.85 kcal Total: -78.52 2.29 -76.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267606271.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.322 kcal (2) G-P(sol) polarization free energy of solvation -78.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds