Wall clock time and date at job start Tue Mar 31 2020 18:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 110.99836 * 2 1 4 4 C 1.46903 * 110.99764 * 123.94991 * 2 1 3 5 5 C 1.53002 * 109.47131 * 170.00681 * 4 2 1 6 6 C 1.50692 * 109.47499 * 180.02562 * 5 4 2 7 7 O 1.21288 * 119.99835 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00617 * 179.97438 * 6 5 4 9 9 C 1.49868 * 127.92606 * 4.13006 * 8 6 5 10 10 C 1.54947 * 103.39902 * 219.93427 * 9 8 6 11 11 C 1.54576 * 102.86174 * 322.44852 * 10 9 8 12 12 H 1.08999 * 118.12768 * 242.38847 * 11 10 9 13 13 C 1.52933 * 118.19776 * 85.42225 * 11 10 9 14 14 C 1.47526 * 127.04638 * 184.95016 * 8 6 5 15 15 C 1.50694 * 117.37085 * 295.05949 * 14 8 6 16 16 O 1.21285 * 120.00490 * 263.31770 * 15 14 8 17 17 N 1.34781 * 120.00398 * 83.31674 * 15 14 8 18 18 C 1.47568 * 134.49956 * 175.53883 * 17 15 14 19 19 C 1.53939 * 86.24628 * 204.69900 * 18 17 15 20 20 C 1.50699 * 113.74504 * 221.99609 * 19 18 17 21 21 H 1.07991 * 120.00019 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00008 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99851 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00132 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47192 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47179 * 119.99858 * 24 22 20 27 27 H 1.48499 * 109.47391 * 240.00032 * 24 22 20 28 28 C 1.47933 * 134.62230 * 355.62926 * 17 15 14 29 29 H 1.08997 * 109.47677 * 296.04773 * 1 2 3 30 30 H 1.09001 * 109.46901 * 56.05408 * 1 2 3 31 31 H 1.09007 * 109.46346 * 176.04767 * 1 2 3 32 32 H 1.08998 * 109.47507 * 183.94822 * 3 2 1 33 33 H 1.08998 * 109.46791 * 303.95321 * 3 2 1 34 34 H 1.09000 * 109.47326 * 63.95106 * 3 2 1 35 35 H 1.08992 * 109.47406 * 50.00261 * 4 2 1 36 36 H 1.09000 * 109.47429 * 290.00028 * 4 2 1 37 37 H 1.09002 * 109.47337 * 59.99617 * 5 4 2 38 38 H 1.09007 * 109.46791 * 299.99921 * 5 4 2 39 39 H 1.08999 * 110.69845 * 101.39842 * 9 8 6 40 40 H 1.08997 * 110.49250 * 338.37254 * 9 8 6 41 41 H 1.09000 * 110.73798 * 204.10714 * 10 9 8 42 42 H 1.08996 * 110.73459 * 80.78815 * 10 9 8 43 43 H 1.09010 * 117.45604 * 160.77187 * 13 11 10 44 44 H 1.08996 * 117.43480 * 16.01489 * 13 11 10 45 45 H 1.09007 * 113.76655 * 90.34270 * 18 17 15 46 46 H 1.08995 * 113.77322 * 319.06134 * 18 17 15 47 47 H 1.08999 * 113.74224 * 90.68049 * 19 18 17 48 48 H 0.96999 * 120.00029 * 180.02562 * 23 22 20 49 49 H 1.09005 * 113.76943 * 40.99859 * 28 17 15 50 50 H 1.09004 * 113.86988 * 269.61178 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.5045 -0.9552 0.9706 6 6 4.0444 -1.7414 2.1373 7 8 3.2960 -2.1134 3.0162 8 7 5.3589 -2.0313 2.2041 9 6 6.4474 -1.5930 1.2718 10 6 7.3369 -2.8549 1.1398 11 6 7.3076 -3.4474 2.5672 12 1 8.2476 -3.5158 3.1146 13 6 6.1486 -4.3722 2.9421 14 6 6.0340 -2.8701 3.2127 15 6 6.0346 -2.3761 4.6364 16 8 6.9920 -1.7689 5.0672 17 7 4.9713 -2.6091 5.4311 18 6 4.6675 -2.3565 6.8529 19 6 3.6676 -3.5216 6.7417 20 6 2.3552 -3.2632 7.4360 21 1 2.1905 -2.3270 7.9484 22 6 1.3647 -4.2222 7.4169 23 7 1.5651 -5.3622 6.7924 24 14 -0.2617 -3.9023 8.2780 25 1 -0.2355 -2.5544 8.9007 26 1 -1.3671 -3.9684 7.2886 27 1 -0.4760 -4.9295 9.3289 28 6 3.6396 -3.2218 5.2319 29 1 -0.3634 0.4512 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3632 -1.0253 -0.0708 32 1 3.0827 1.3433 -0.0708 33 1 1.5897 1.9163 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 1.5090 -1.7405 1.1758 36 1 1.7975 -0.2247 2.0629 37 1 3.9909 0.0195 0.9325 38 1 3.7025 -1.4965 0.0453 39 1 7.0136 -0.7668 1.7019 40 1 6.0313 -1.3130 0.3041 41 1 8.3534 -2.5827 0.8558 42 1 6.9091 -3.5553 0.4225 43 1 6.2871 -5.0285 3.8015 44 1 5.5510 -4.7834 2.1287 45 1 4.1976 -1.3902 7.0368 46 1 5.5033 -2.5572 7.5231 47 1 4.0963 -4.4929 6.9883 48 1 0.8681 -6.0367 6.7787 49 1 3.6557 -4.1144 4.6064 50 1 2.8664 -2.5113 4.9394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269028688.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:26 Heat of formation + Delta-G solvation = 19.367546 kcal Electronic energy + Delta-G solvation = -30609.594739 eV Core-core repulsion = 26639.813940 eV Total energy + Delta-G solvation = -3969.780800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75947 -38.92552 -38.30092 -37.24863 -36.50173 -33.24793 -32.54560 -31.20824 -30.66068 -28.86256 -27.77379 -25.81260 -25.15458 -24.87113 -23.72233 -23.13503 -21.50353 -20.88721 -20.03720 -19.08356 -18.20018 -16.87563 -16.62838 -16.27407 -15.94545 -15.77211 -15.50103 -14.97393 -14.83688 -14.63283 -14.50873 -14.31452 -13.91157 -13.63069 -13.25841 -13.19453 -12.84009 -12.59327 -12.46371 -12.31186 -12.05030 -11.97517 -11.94424 -11.80742 -11.63801 -11.32488 -11.23287 -11.09381 -11.03016 -10.84679 -10.72770 -10.65134 -10.35793 -10.20993 -9.68686 -9.49182 -9.10575 -8.97549 -8.57331 -8.51495 -8.35956 -7.66464 -6.06956 -4.10640 2.51750 2.73733 3.29003 3.32792 3.36209 3.37568 3.41691 3.68638 3.86126 4.37393 4.42197 4.50080 4.73074 4.74110 4.86264 4.97201 5.00078 5.02372 5.06715 5.14386 5.21116 5.25336 5.32721 5.35133 5.42397 5.47027 5.55896 5.64371 5.67820 5.72937 5.75930 5.80496 5.82288 5.91544 6.14072 6.22268 6.26167 6.38108 6.40364 6.48806 6.79549 6.81154 6.91999 7.00928 7.13563 7.55648 7.69049 7.91437 8.29213 8.39196 8.61345 8.86139 8.91207 9.54431 11.03167 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007884 B = 0.004730 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3550.661921 B = 5917.623288 C = 8591.822176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.019 3.981 4 C 0.068 3.932 5 C -0.126 4.126 6 C 0.523 3.477 7 O -0.502 6.502 8 N -0.592 5.592 9 C 0.106 3.894 10 C -0.104 4.104 11 C -0.135 4.135 12 H 0.127 0.873 13 C -0.135 4.135 14 C 0.068 3.932 15 C 0.560 3.440 16 O -0.568 6.568 17 N -0.620 5.620 18 C 0.102 3.898 19 C 0.024 3.976 20 C -0.514 4.514 21 H 0.061 0.939 22 C 0.068 3.932 23 N -0.886 5.886 24 Si 0.893 3.107 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.138 3.862 29 H 0.028 0.972 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.111 0.889 44 H 0.102 0.898 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.261 0.739 49 H 0.054 0.946 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.916 7.267 -17.744 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.274 5.274 3 C -0.130 4.130 4 C -0.060 4.060 5 C -0.167 4.167 6 C 0.311 3.689 7 O -0.376 6.376 8 N -0.329 5.329 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.154 4.154 12 H 0.145 0.855 13 C -0.173 4.173 14 C -0.022 4.022 15 C 0.346 3.654 16 O -0.449 6.449 17 N -0.352 5.352 18 C -0.019 4.019 19 C 0.005 3.995 20 C -0.552 4.552 21 H 0.079 0.921 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.720 3.280 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 C 0.016 3.984 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.129 0.871 44 H 0.120 0.880 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.052 7.085 -17.637 19.947 hybrid contribution -1.134 0.585 1.035 1.643 sum 4.919 7.670 -16.602 18.938 Atomic orbital electron populations 1.22367 0.86861 1.02582 1.00525 1.61991 1.08280 1.13753 1.43345 1.22459 1.00863 0.89061 1.00587 1.21869 0.93226 0.99503 0.91438 1.21560 0.96948 1.00842 0.97319 1.20481 0.80181 0.80385 0.87844 1.90898 1.55917 1.52055 1.38698 1.48689 1.06033 1.50470 1.27697 1.23026 0.87827 0.97391 0.93309 1.22363 1.00648 0.96263 0.94924 1.23683 0.93468 1.02041 0.96188 0.85508 1.23478 0.98746 0.91440 1.03625 1.21330 0.99394 0.92818 0.88622 1.18866 0.82722 0.79341 0.84444 1.90619 1.36142 1.42784 1.75313 1.50541 1.15199 1.57306 1.12110 1.23507 0.97507 1.01059 0.79868 1.20630 0.93677 0.93288 0.91934 1.20971 0.98042 1.02048 1.34123 0.92067 1.24987 0.98671 0.94835 0.94968 1.69965 1.33766 1.06359 1.42241 0.86528 0.83706 0.78358 0.79373 1.19671 1.20966 1.20960 1.23727 0.79672 0.95466 0.99501 0.95349 0.91424 0.91078 0.91300 0.91446 0.95446 0.89520 0.93517 0.89341 0.88272 0.90338 0.89623 0.89211 0.90222 0.87081 0.87983 0.91059 0.92307 0.92112 0.92887 0.92718 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.57 60.07 0.57 0.81 16 2 N -0.55 -5.81 5.02 -251.26 -1.26 -7.07 16 3 C 0.02 0.16 9.32 60.06 0.56 0.72 16 4 C 0.07 0.84 4.25 -3.82 -0.02 0.82 16 5 C -0.13 -1.42 4.58 -27.89 -0.13 -1.54 16 6 C 0.52 8.11 7.89 -10.99 -0.09 8.02 16 7 O -0.50 -9.97 11.77 5.55 0.07 -9.90 16 8 N -0.59 -8.59 3.22 -154.84 -0.50 -9.09 16 9 C 0.11 1.05 7.06 -1.13 -0.01 1.04 16 10 C -0.10 -0.93 6.86 -24.88 -0.17 -1.10 16 11 C -0.13 -1.70 6.87 -89.30 -0.61 -2.32 16 12 H 0.13 1.59 8.14 -51.93 -0.42 1.16 16 13 C -0.13 -1.95 10.01 -26.73 -0.27 -2.21 16 14 C 0.07 1.13 2.06 -131.85 -0.27 0.86 16 15 C 0.56 11.97 7.67 -10.99 -0.08 11.88 16 16 O -0.57 -13.40 17.77 5.55 0.10 -13.30 16 17 N -0.62 -14.03 3.60 -177.34 -0.64 -14.67 16 18 C 0.10 2.34 8.38 -2.99 -0.03 2.31 16 19 C 0.02 0.60 3.62 -90.84 -0.33 0.28 16 20 C -0.51 -13.93 8.77 -34.44 -0.30 -14.23 16 21 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 22 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 23 N -0.89 -25.23 13.27 55.43 0.74 -24.49 16 24 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.14 3.30 5.80 -2.78 -0.02 3.28 16 29 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.07 0.55 6.47 -51.93 -0.34 0.21 16 33 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 34 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 1.18 8.02 -51.93 -0.42 0.77 16 36 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 37 H 0.09 0.86 6.55 -51.93 -0.34 0.52 16 38 H 0.10 0.94 8.08 -51.92 -0.42 0.52 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.60 7.40 -51.93 -0.38 0.21 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.11 1.67 8.14 -51.92 -0.42 1.25 16 44 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.07 1.60 8.09 -51.93 -0.42 1.18 16 46 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 47 H 0.06 1.64 8.13 -51.93 -0.42 1.22 16 48 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 50 H 0.09 2.33 6.27 -51.93 -0.33 2.01 16 LS Contribution 402.68 15.07 6.07 6.07 Total: -1.00 -33.29 402.68 -10.25 -43.54 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -8.52 Total: 2.45 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -1.28 Total: 10.42 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -1.66 Total: -55.32 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.16 Total: -23.20 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.29 -10.25 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269028688.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.907 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds