Wall clock time and date at job start Tue Mar 31 2020 18:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 110.99836 * 2 1 4 4 C 1.46903 * 110.99764 * 123.94991 * 2 1 3 5 5 C 1.53002 * 109.47131 * 170.00681 * 4 2 1 6 6 C 1.50692 * 109.47499 * 180.02562 * 5 4 2 7 7 O 1.21288 * 119.99835 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00617 * 179.97438 * 6 5 4 9 9 C 1.49868 * 127.92606 * 4.13006 * 8 6 5 10 10 C 1.54947 * 103.39902 * 219.93427 * 9 8 6 11 11 C 1.54576 * 102.86174 * 322.44852 * 10 9 8 12 12 H 1.08999 * 118.12768 * 242.38847 * 11 10 9 13 13 C 1.52933 * 118.19776 * 85.42225 * 11 10 9 14 14 C 1.47526 * 127.04638 * 184.95016 * 8 6 5 15 15 C 1.50694 * 117.37085 * 295.05949 * 14 8 6 16 16 O 1.21285 * 120.00490 * 263.31770 * 15 14 8 17 17 N 1.34781 * 120.00398 * 83.31674 * 15 14 8 18 18 C 1.47568 * 134.49956 * 175.53883 * 17 15 14 19 19 C 1.53939 * 86.24628 * 204.69900 * 18 17 15 20 20 C 1.50699 * 113.74504 * 221.99609 * 19 18 17 21 21 H 1.07991 * 120.00019 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00008 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99851 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00132 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47192 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47179 * 119.99858 * 24 22 20 27 27 H 1.48499 * 109.47391 * 240.00032 * 24 22 20 28 28 C 1.47933 * 134.62230 * 355.62926 * 17 15 14 29 29 H 1.08997 * 109.47677 * 296.04773 * 1 2 3 30 30 H 1.09001 * 109.46901 * 56.05408 * 1 2 3 31 31 H 1.09007 * 109.46346 * 176.04767 * 1 2 3 32 32 H 1.08998 * 109.47507 * 183.94822 * 3 2 1 33 33 H 1.08998 * 109.46791 * 303.95321 * 3 2 1 34 34 H 1.09000 * 109.47326 * 63.95106 * 3 2 1 35 35 H 1.08992 * 109.47406 * 50.00261 * 4 2 1 36 36 H 1.09000 * 109.47429 * 290.00028 * 4 2 1 37 37 H 1.09002 * 109.47337 * 59.99617 * 5 4 2 38 38 H 1.09007 * 109.46791 * 299.99921 * 5 4 2 39 39 H 1.08999 * 110.69845 * 101.39842 * 9 8 6 40 40 H 1.08997 * 110.49250 * 338.37254 * 9 8 6 41 41 H 1.09000 * 110.73798 * 204.10714 * 10 9 8 42 42 H 1.08996 * 110.73459 * 80.78815 * 10 9 8 43 43 H 1.09010 * 117.45604 * 160.77187 * 13 11 10 44 44 H 1.08996 * 117.43480 * 16.01489 * 13 11 10 45 45 H 1.09007 * 113.76655 * 90.34270 * 18 17 15 46 46 H 1.08995 * 113.77322 * 319.06134 * 18 17 15 47 47 H 1.08999 * 113.74224 * 90.68049 * 19 18 17 48 48 H 0.96999 * 120.00029 * 180.02562 * 23 22 20 49 49 H 1.09005 * 113.76943 * 40.99859 * 28 17 15 50 50 H 1.09004 * 113.86988 * 269.61178 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.5045 -0.9552 0.9706 6 6 4.0444 -1.7414 2.1373 7 8 3.2960 -2.1134 3.0162 8 7 5.3589 -2.0313 2.2041 9 6 6.4474 -1.5930 1.2718 10 6 7.3369 -2.8549 1.1398 11 6 7.3076 -3.4474 2.5672 12 1 8.2476 -3.5158 3.1146 13 6 6.1486 -4.3722 2.9421 14 6 6.0340 -2.8701 3.2127 15 6 6.0346 -2.3761 4.6364 16 8 6.9920 -1.7689 5.0672 17 7 4.9713 -2.6091 5.4311 18 6 4.6675 -2.3565 6.8529 19 6 3.6676 -3.5216 6.7417 20 6 2.3552 -3.2632 7.4360 21 1 2.1905 -2.3270 7.9484 22 6 1.3647 -4.2222 7.4169 23 7 1.5651 -5.3622 6.7924 24 14 -0.2617 -3.9023 8.2780 25 1 -0.2355 -2.5544 8.9007 26 1 -1.3671 -3.9684 7.2886 27 1 -0.4760 -4.9295 9.3289 28 6 3.6396 -3.2218 5.2319 29 1 -0.3634 0.4512 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3632 -1.0253 -0.0708 32 1 3.0827 1.3433 -0.0708 33 1 1.5897 1.9163 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 1.5090 -1.7405 1.1758 36 1 1.7975 -0.2247 2.0629 37 1 3.9909 0.0195 0.9325 38 1 3.7025 -1.4965 0.0453 39 1 7.0136 -0.7668 1.7019 40 1 6.0313 -1.3130 0.3041 41 1 8.3534 -2.5827 0.8558 42 1 6.9091 -3.5553 0.4225 43 1 6.2871 -5.0285 3.8015 44 1 5.5510 -4.7834 2.1287 45 1 4.1976 -1.3902 7.0368 46 1 5.5033 -2.5572 7.5231 47 1 4.0963 -4.4929 6.9883 48 1 0.8681 -6.0367 6.7787 49 1 3.6557 -4.1144 4.6064 50 1 2.8664 -2.5113 4.9394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269028688.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:25 Heat of formation + Delta-G solvation = -3.462530 kcal Electronic energy + Delta-G solvation = -30610.584726 eV Core-core repulsion = 26639.813940 eV Total energy + Delta-G solvation = -3970.770786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.00126 -40.47277 -39.62259 -38.38293 -38.06727 -34.65981 -34.35083 -32.14817 -31.76779 -30.59172 -28.49925 -27.39610 -26.87749 -26.46189 -24.63266 -24.43283 -22.75373 -21.98780 -21.23394 -20.60162 -19.68441 -18.67508 -18.14187 -17.60197 -17.25335 -16.99983 -16.71382 -16.59036 -16.12186 -15.85368 -15.75369 -15.56293 -15.12057 -14.76669 -14.69365 -14.22319 -14.15448 -14.05835 -13.71297 -13.51665 -13.33610 -13.23298 -13.05805 -12.88367 -12.82842 -12.77749 -12.63263 -12.61432 -12.44290 -12.26019 -12.15979 -11.94879 -11.82150 -11.44095 -11.30150 -11.21177 -10.82191 -10.69206 -10.52276 -9.66980 -9.55935 -9.42898 -8.18755 -6.29533 1.19480 1.41148 1.42744 1.54591 1.59010 1.87361 2.01276 2.38425 2.43382 2.95258 3.11437 3.37014 3.43965 3.55772 3.74770 3.86094 3.92217 4.07693 4.20199 4.26972 4.28456 4.32426 4.40370 4.45180 4.46994 4.50454 4.53444 4.55911 4.63081 4.65974 4.67370 4.69445 4.85426 4.88985 4.94818 4.95767 4.98639 5.00078 5.03510 5.07010 5.08283 5.19463 5.33723 5.56907 5.79275 5.92729 6.02349 6.20899 6.49003 6.76338 6.82189 7.08183 7.20829 7.39149 8.91879 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007884 B = 0.004730 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3550.661921 B = 5917.623288 C = 8591.822176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.548 5.548 3 C 0.016 3.984 4 C 0.074 3.926 5 C -0.109 4.109 6 C 0.512 3.488 7 O -0.559 6.559 8 N -0.591 5.591 9 C 0.101 3.899 10 C -0.093 4.093 11 C -0.101 4.101 12 H 0.128 0.872 13 C -0.137 4.137 14 C 0.028 3.972 15 C 0.554 3.446 16 O -0.593 6.593 17 N -0.626 5.626 18 C 0.107 3.893 19 C 0.017 3.983 20 C -0.531 4.531 21 H 0.061 0.939 22 C 0.021 3.979 23 N -0.918 5.918 24 Si 0.959 3.041 25 H -0.266 1.266 26 H -0.281 1.281 27 H -0.276 1.276 28 C 0.168 3.832 29 H 0.018 0.982 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.016 0.984 35 H 0.066 0.934 36 H 0.017 0.983 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.077 0.923 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.036 0.964 48 H 0.264 0.736 49 H 0.039 0.961 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.808 8.402 -20.619 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.272 5.272 3 C -0.132 4.132 4 C -0.055 4.055 5 C -0.149 4.149 6 C 0.302 3.698 7 O -0.437 6.437 8 N -0.327 5.327 9 C -0.019 4.019 10 C -0.131 4.131 11 C -0.121 4.121 12 H 0.146 0.854 13 C -0.176 4.176 14 C -0.062 4.062 15 C 0.342 3.658 16 O -0.476 6.476 17 N -0.357 5.357 18 C -0.016 4.016 19 C -0.003 4.003 20 C -0.569 4.569 21 H 0.079 0.921 22 C -0.179 4.179 23 N -0.556 5.556 24 Si 0.784 3.216 25 H -0.190 1.190 26 H -0.207 1.207 27 H -0.202 1.202 28 C 0.046 3.954 29 H 0.036 0.964 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.035 0.965 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.130 0.870 38 H 0.146 0.854 39 H 0.095 0.905 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.131 0.869 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.993 8.241 -20.549 23.218 hybrid contribution -1.342 0.252 1.943 2.374 sum 5.652 8.493 -18.606 21.219 Atomic orbital electron populations 1.22440 0.86515 1.02718 1.00938 1.62054 1.08722 1.14688 1.41725 1.22568 1.01804 0.87973 1.00847 1.21707 0.94367 0.98400 0.91036 1.21499 0.95608 1.01510 0.96256 1.21318 0.80244 0.79961 0.88269 1.90866 1.57488 1.54333 1.40978 1.48912 1.06563 1.49731 1.27447 1.23380 0.86768 0.97757 0.93973 1.22499 1.02576 0.95667 0.92316 1.23967 0.91745 0.98162 0.98181 0.85371 1.23478 1.00440 0.90129 1.03519 1.21281 1.03738 0.94353 0.86819 1.19763 0.81406 0.78315 0.86269 1.90580 1.36655 1.43845 1.76491 1.50540 1.15299 1.57824 1.12043 1.23358 0.97221 1.00093 0.80882 1.20544 0.93842 0.92985 0.92888 1.21245 0.98974 1.02213 1.34431 0.92083 1.25770 1.02071 0.94525 0.95572 1.70075 1.34963 1.07192 1.43346 0.85493 0.79256 0.78531 0.78317 1.18969 1.20655 1.20181 1.23153 0.80111 0.94217 0.97919 0.96375 0.89260 0.91443 0.89919 0.89605 0.96527 0.91591 0.96472 0.87044 0.85435 0.90478 0.85623 0.85924 0.88273 0.88775 0.86855 0.90876 0.91407 0.94548 0.92674 0.94234 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.57 127.69 1.22 1.62 16 2 N -0.55 -10.77 5.02 -948.84 -4.76 -15.53 16 3 C 0.02 0.25 9.32 127.69 1.19 1.44 16 4 C 0.07 1.82 4.25 86.30 0.37 2.19 16 5 C -0.11 -2.22 4.58 29.85 0.14 -2.08 16 6 C 0.51 15.67 7.89 87.65 0.69 16.36 16 7 O -0.56 -23.22 11.77 -3.05 -0.04 -23.25 16 8 N -0.59 -16.22 3.22 -762.19 -2.45 -18.68 16 9 C 0.10 1.59 7.06 86.39 0.61 2.20 16 10 C -0.09 -1.22 6.86 31.80 0.22 -1.00 16 11 C -0.10 -2.33 6.87 -9.94 -0.07 -2.40 16 12 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 13 C -0.14 -3.93 10.01 30.59 0.31 -3.62 16 14 C 0.03 0.92 2.06 3.02 0.01 0.93 16 15 C 0.55 24.20 7.67 87.65 0.67 24.87 16 16 O -0.59 -28.35 17.77 -3.04 -0.05 -28.40 16 17 N -0.63 -29.55 3.60 -833.37 -3.00 -32.55 16 18 C 0.11 5.08 8.38 86.48 0.72 5.80 16 19 C 0.02 0.89 3.62 -10.89 -0.04 0.85 16 20 C -0.53 -29.77 8.77 25.60 0.22 -29.54 16 21 H 0.06 3.35 7.81 -2.92 -0.02 3.32 16 22 C 0.02 1.16 5.46 84.66 0.46 1.62 16 23 N -0.92 -53.83 13.27 21.45 0.28 -53.54 16 24 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 28 C 0.17 8.53 5.80 86.41 0.50 9.04 16 29 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.09 1.24 8.12 -2.39 -0.02 1.22 16 31 H 0.07 1.26 8.12 -2.38 -0.02 1.24 16 32 H 0.08 1.04 6.47 -2.39 -0.02 1.02 16 33 H 0.09 1.02 8.12 -2.39 -0.02 1.00 16 34 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.07 1.88 8.02 -2.39 -0.02 1.86 16 36 H 0.02 0.51 8.08 -2.39 -0.02 0.49 16 37 H 0.11 1.79 6.55 -2.39 -0.02 1.77 16 38 H 0.13 1.92 8.08 -2.38 -0.02 1.90 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.13 1.01 7.40 -2.39 -0.02 0.99 16 41 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.09 2.95 8.14 -2.38 -0.02 2.93 16 44 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 45 H 0.07 3.42 8.09 -2.38 -0.02 3.40 16 46 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 47 H 0.04 2.09 8.13 -2.39 -0.02 2.07 16 48 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 49 H 0.04 2.08 8.14 -2.38 -0.02 2.06 16 50 H 0.07 3.97 6.27 -2.38 -0.01 3.96 16 Total: -1.00 -76.74 402.68 0.14 -76.60 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.91 Total: 21.15 kcal Atomic # 6 Polarization: 21.03 SS G_CDS: 7.22 Total: 28.26 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -9.93 Total: -120.30 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -0.09 Total: -51.65 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -76.74 0.14 -76.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269028688.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.138 kcal (2) G-P(sol) polarization free energy of solvation -76.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds