Wall clock time and date at job start Tue Mar 31 2020 18:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00548 * 2 1 4 4 C 1.46900 * 111.00003 * 123.95870 * 2 1 3 5 5 C 1.52995 * 109.47331 * 66.04493 * 4 2 1 6 6 C 1.50697 * 109.47242 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00329 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00090 * 179.97438 * 6 5 4 9 9 C 1.47724 * 134.39415 * 179.97438 * 8 6 5 10 10 C 1.53294 * 85.85679 * 155.87597 * 9 8 6 11 11 C 1.52325 * 128.82073 * 163.01826 * 10 9 8 12 12 C 1.52469 * 128.84752 * 243.35723 * 10 9 8 13 13 H 1.09006 * 117.54557 * 134.70961 * 12 10 9 14 14 C 1.50700 * 117.54853 * 349.54107 * 12 10 9 15 15 O 1.21283 * 119.99794 * 0.21425 * 14 12 10 16 16 N 1.34774 * 120.00222 * 180.21136 * 14 12 10 17 17 C 1.47067 * 136.05930 * 359.63102 * 16 14 12 18 18 C 1.53234 * 88.08435 * 207.20014 * 17 16 14 19 19 C 1.50697 * 114.32771 * 220.46540 * 18 17 16 20 20 H 1.08003 * 119.99323 * 93.76223 * 19 18 17 21 21 C 1.37875 * 120.00471 * 273.75976 * 19 18 17 22 22 N 1.31513 * 119.99486 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00126 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47306 * 60.00430 * 23 21 19 25 25 H 1.48504 * 109.47330 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47276 * 300.00036 * 23 21 19 27 27 C 1.47066 * 136.05508 * 179.97438 * 16 14 12 28 28 C 1.47731 * 134.39332 * 359.95308 * 8 6 5 29 29 H 1.09003 * 109.46639 * 296.04332 * 1 2 3 30 30 H 1.09002 * 109.46797 * 56.03941 * 1 2 3 31 31 H 1.08995 * 109.46876 * 176.04553 * 1 2 3 32 32 H 1.08997 * 109.47726 * 183.95661 * 3 2 1 33 33 H 1.09001 * 109.47133 * 303.96331 * 3 2 1 34 34 H 1.09011 * 109.46727 * 63.95463 * 3 2 1 35 35 H 1.08997 * 109.46886 * 306.03813 * 4 2 1 36 36 H 1.09000 * 109.47035 * 186.04548 * 4 2 1 37 37 H 1.09004 * 109.47330 * 60.00022 * 5 4 2 38 38 H 1.09000 * 109.47105 * 300.00012 * 5 4 2 39 39 H 1.09000 * 113.81059 * 41.64365 * 9 8 6 40 40 H 1.09001 * 113.92301 * 270.11728 * 9 8 6 41 41 H 1.09002 * 117.51803 * 10.45391 * 11 10 9 42 42 H 1.09002 * 117.51228 * 225.37633 * 11 10 9 43 43 H 1.09000 * 113.46688 * 321.93728 * 17 16 14 44 44 H 1.09005 * 113.46780 * 92.37301 * 17 16 14 45 45 H 1.09008 * 114.01392 * 87.71258 * 18 17 16 46 46 H 0.97002 * 119.99676 * 179.97438 * 22 21 19 47 47 H 1.08995 * 113.46892 * 267.62438 * 27 16 14 48 48 H 1.09004 * 113.46772 * 38.07429 * 27 16 14 49 49 H 1.09001 * 113.80679 * 89.89381 * 28 8 6 50 50 H 1.08998 * 113.80624 * 318.35798 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.6315 -2.2427 0.9702 6 6 2.1710 -3.0284 2.1375 7 8 2.7865 -2.4632 3.0164 8 7 1.9695 -4.3593 2.2047 9 6 2.3429 -5.4137 3.1697 10 6 1.1447 -6.1916 2.6138 11 6 0.8268 -7.6757 2.7427 12 6 -0.1262 -6.6317 3.3320 13 1 -1.0755 -6.4709 2.8208 14 6 -0.1635 -6.4910 4.8319 15 8 0.7939 -6.0376 5.4224 16 7 -1.2608 -6.8689 5.5172 17 6 -2.5761 -7.4350 5.1817 18 6 -3.1263 -6.7754 6.4506 19 6 -4.1000 -7.6290 7.2217 20 1 -3.7490 -8.2499 8.0327 21 6 -5.4386 -7.6172 6.8919 22 7 -5.8658 -6.8614 5.9040 23 14 -6.6453 -8.6758 7.8472 24 1 -6.6250 -8.2807 9.2785 25 1 -8.0125 -8.4849 7.2999 26 1 -6.2576 -10.1038 7.7224 27 6 -1.6722 -6.8909 6.9290 28 6 1.2868 -5.3461 1.3429 29 1 -0.3633 0.4512 0.9234 30 1 -0.3633 0.5741 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0829 1.3432 -0.0709 33 1 1.5898 1.9163 -0.8523 34 1 1.7045 1.8723 0.9234 35 1 1.5612 -0.3873 2.0627 36 1 3.0797 -0.6612 1.1755 37 1 2.0658 -2.6214 0.0450 38 1 0.5472 -2.3475 0.9322 39 1 2.2292 -5.1163 4.2121 40 1 3.3055 -5.8815 2.9628 41 1 1.4266 -8.2605 3.4401 42 1 0.5044 -8.2015 1.8440 43 1 -3.0018 -7.0295 4.2638 44 1 -2.6006 -8.5243 5.2130 45 1 -3.4692 -5.7510 6.3052 46 1 -6.8075 -6.8534 5.6717 47 1 -1.4537 -7.8339 7.4301 48 1 -1.3309 -6.0235 7.4941 49 1 1.9335 -5.7925 0.5875 50 1 0.3371 -4.9952 0.9392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269029502.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:23 Heat of formation + Delta-G solvation = 41.234803 kcal Electronic energy + Delta-G solvation = -28651.838073 eV Core-core repulsion = 24683.005509 eV Total energy + Delta-G solvation = -3968.832564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78253 -39.49962 -38.58742 -37.47358 -36.86775 -34.48159 -32.73319 -31.72101 -29.46471 -28.05098 -27.88259 -26.50227 -25.62593 -25.03041 -24.73969 -23.25892 -21.45940 -20.52819 -19.62740 -18.84058 -18.01940 -17.18178 -16.98562 -16.58906 -16.33123 -15.92159 -15.51651 -15.32972 -15.03575 -14.88989 -14.60195 -14.47527 -14.32052 -14.10428 -13.22388 -13.17400 -13.00316 -12.88935 -12.67948 -12.47486 -12.27345 -12.09920 -11.99450 -11.96877 -11.76473 -11.58023 -11.36634 -11.19140 -10.98620 -10.93561 -10.85782 -10.76113 -10.38536 -10.32826 -9.75128 -9.60955 -9.26276 -9.03441 -8.74185 -8.69108 -8.62564 -7.91726 -6.22782 -4.28542 2.57423 2.61836 2.85514 3.22207 3.27723 3.28210 3.33868 3.62532 3.83223 4.14311 4.26760 4.30747 4.49550 4.61903 4.75193 4.83238 4.87759 5.03916 5.08980 5.09992 5.16749 5.18051 5.22114 5.27196 5.28763 5.33334 5.49481 5.55923 5.58776 5.59727 5.62219 5.66885 5.73620 5.84297 5.86346 6.01652 6.05843 6.16479 6.22173 6.40156 6.52033 6.59915 6.66529 6.67816 6.77470 7.50267 7.63234 7.74965 8.09375 8.13172 8.46708 8.70347 8.75438 9.38476 10.86983 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013088 B = 0.002289 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.909855 B =12230.145477 C =13468.103882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.550 5.550 3 C 0.025 3.975 4 C 0.069 3.931 5 C -0.131 4.131 6 C 0.538 3.462 7 O -0.542 6.542 8 N -0.642 5.642 9 C 0.142 3.858 10 C -0.151 4.151 11 C -0.124 4.124 12 C -0.141 4.141 13 H 0.126 0.874 14 C 0.559 3.441 15 O -0.560 6.560 16 N -0.639 5.639 17 C 0.100 3.900 18 C 0.034 3.966 19 C -0.518 4.518 20 H 0.063 0.937 21 C 0.068 3.932 22 N -0.886 5.886 23 Si 0.897 3.103 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.100 3.900 28 C 0.142 3.858 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.265 0.735 47 H 0.074 0.926 48 H 0.057 0.943 49 H 0.095 0.905 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.059 5.109 -15.708 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.274 5.274 3 C -0.123 4.123 4 C -0.059 4.059 5 C -0.171 4.171 6 C 0.327 3.673 7 O -0.419 6.419 8 N -0.378 5.378 9 C 0.021 3.979 10 C -0.153 4.153 11 C -0.163 4.163 12 C -0.162 4.162 13 H 0.144 0.856 14 C 0.349 3.651 15 O -0.440 6.440 16 N -0.371 5.371 17 C -0.022 4.022 18 C 0.015 3.985 19 C -0.556 4.556 20 H 0.082 0.918 21 C -0.135 4.135 22 N -0.523 5.523 23 Si 0.724 3.276 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.200 1.200 27 C -0.022 4.022 28 C 0.020 3.980 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.129 0.871 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.113 0.887 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.091 5.798 -15.588 21.165 hybrid contribution -1.214 -0.325 0.990 1.600 sum 11.877 5.473 -14.598 19.599 Atomic orbital electron populations 1.22480 0.87328 1.02523 1.00738 1.61981 1.08161 1.14068 1.43175 1.22366 1.00837 0.88507 1.00605 1.21841 1.01036 0.91526 0.91516 1.21563 1.02815 0.95296 0.97404 1.20224 0.79337 0.80239 0.87457 1.90718 1.41871 1.68553 1.40774 1.49854 1.56397 1.05088 1.26425 1.22804 0.95032 0.83113 0.96944 1.22466 0.97749 0.97120 0.97938 1.22845 1.00493 0.90302 1.02622 1.22049 0.95455 1.05296 0.93403 0.85614 1.19024 0.80840 0.78123 0.87159 1.90591 1.35074 1.47722 1.70650 1.49935 1.15099 1.60698 1.11382 1.23569 0.78071 0.98526 1.02083 1.20303 0.89041 0.98012 0.91140 1.20861 0.91781 1.25744 1.17194 0.91848 1.25029 0.98380 0.95200 0.94918 1.69939 1.15810 1.38419 1.28137 0.86581 0.79919 0.80788 0.80309 1.20024 1.21212 1.20041 1.23365 0.96214 1.00392 0.82195 1.22726 0.97212 0.85395 0.92706 0.95334 0.91270 0.91076 0.91252 0.91268 0.95461 0.93715 0.89931 0.88192 0.88936 0.87133 0.89657 0.87727 0.87165 0.92260 0.90661 0.91450 0.92550 0.90785 0.92449 0.88664 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.32 60.06 0.56 0.70 16 2 N -0.55 -5.09 5.02 -251.26 -1.26 -6.35 16 3 C 0.03 0.19 9.57 60.06 0.57 0.77 16 4 C 0.07 0.74 4.25 -3.83 -0.02 0.72 16 5 C -0.13 -1.32 5.37 -27.89 -0.15 -1.47 16 6 C 0.54 7.56 8.06 -10.99 -0.09 7.47 16 7 O -0.54 -9.87 16.71 5.56 0.09 -9.77 16 8 N -0.64 -8.24 3.61 -181.70 -0.66 -8.89 16 9 C 0.14 1.95 8.36 -3.22 -0.03 1.92 16 10 C -0.15 -1.77 3.04 -154.94 -0.47 -2.24 16 11 C -0.12 -1.30 10.23 -27.00 -0.28 -1.57 16 12 C -0.14 -1.97 6.02 -91.97 -0.55 -2.52 16 13 H 0.13 1.63 8.14 -51.93 -0.42 1.21 16 14 C 0.56 10.54 7.86 -10.99 -0.09 10.45 16 15 O -0.56 -12.04 14.94 5.56 0.08 -11.96 16 16 N -0.64 -12.67 3.69 -185.38 -0.68 -13.36 16 17 C 0.10 2.02 7.98 -8.64 -0.07 1.95 16 18 C 0.03 0.79 3.77 -91.38 -0.34 0.44 16 19 C -0.52 -12.92 8.82 -34.44 -0.30 -13.22 16 20 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 21 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -23.66 13.26 55.43 0.74 -22.93 16 23 Si 0.90 19.71 29.54 -169.99 -5.02 14.69 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 C 0.10 2.07 8.19 -8.50 -0.07 2.00 16 28 C 0.14 1.28 8.63 -3.21 -0.03 1.25 16 29 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.07 0.55 6.47 -51.93 -0.34 0.21 16 32 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 33 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 34 H 0.03 0.22 8.14 -51.92 -0.42 -0.21 16 35 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 36 H 0.08 0.92 8.02 -51.93 -0.42 0.51 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.85 6.55 -51.93 -0.34 0.51 16 39 H 0.11 1.96 5.94 -51.93 -0.31 1.65 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 45 H 0.07 1.71 8.11 -51.92 -0.42 1.29 16 46 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 47 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 48 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 412.42 15.07 6.22 6.22 Total: -1.00 -31.67 412.42 -10.49 -42.15 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -8.54 Total: 1.91 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -1.45 Total: 8.30 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -1.87 Total: -51.53 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.18 Total: -21.73 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.67 -10.49 -42.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269029502.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.385 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds