Wall clock time and date at job start Tue Mar 31 2020 18:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00548 * 2 1 4 4 C 1.46900 * 111.00003 * 123.95870 * 2 1 3 5 5 C 1.52995 * 109.47331 * 66.04493 * 4 2 1 6 6 C 1.50697 * 109.47242 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00329 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00090 * 179.97438 * 6 5 4 9 9 C 1.47724 * 134.39415 * 179.97438 * 8 6 5 10 10 C 1.53294 * 85.85679 * 155.87597 * 9 8 6 11 11 C 1.52325 * 128.82073 * 163.01826 * 10 9 8 12 12 C 1.52469 * 128.84752 * 243.35723 * 10 9 8 13 13 H 1.09006 * 117.54557 * 134.70961 * 12 10 9 14 14 C 1.50700 * 117.54853 * 349.54107 * 12 10 9 15 15 O 1.21283 * 119.99794 * 0.21425 * 14 12 10 16 16 N 1.34774 * 120.00222 * 180.21136 * 14 12 10 17 17 C 1.47067 * 136.05930 * 359.63102 * 16 14 12 18 18 C 1.53234 * 88.08435 * 207.20014 * 17 16 14 19 19 C 1.50697 * 114.32771 * 220.46540 * 18 17 16 20 20 H 1.08003 * 119.99323 * 93.76223 * 19 18 17 21 21 C 1.37875 * 120.00471 * 273.75976 * 19 18 17 22 22 N 1.31513 * 119.99486 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00126 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47306 * 60.00430 * 23 21 19 25 25 H 1.48504 * 109.47330 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47276 * 300.00036 * 23 21 19 27 27 C 1.47066 * 136.05508 * 179.97438 * 16 14 12 28 28 C 1.47731 * 134.39332 * 359.95308 * 8 6 5 29 29 H 1.09003 * 109.46639 * 296.04332 * 1 2 3 30 30 H 1.09002 * 109.46797 * 56.03941 * 1 2 3 31 31 H 1.08995 * 109.46876 * 176.04553 * 1 2 3 32 32 H 1.08997 * 109.47726 * 183.95661 * 3 2 1 33 33 H 1.09001 * 109.47133 * 303.96331 * 3 2 1 34 34 H 1.09011 * 109.46727 * 63.95463 * 3 2 1 35 35 H 1.08997 * 109.46886 * 306.03813 * 4 2 1 36 36 H 1.09000 * 109.47035 * 186.04548 * 4 2 1 37 37 H 1.09004 * 109.47330 * 60.00022 * 5 4 2 38 38 H 1.09000 * 109.47105 * 300.00012 * 5 4 2 39 39 H 1.09000 * 113.81059 * 41.64365 * 9 8 6 40 40 H 1.09001 * 113.92301 * 270.11728 * 9 8 6 41 41 H 1.09002 * 117.51803 * 10.45391 * 11 10 9 42 42 H 1.09002 * 117.51228 * 225.37633 * 11 10 9 43 43 H 1.09000 * 113.46688 * 321.93728 * 17 16 14 44 44 H 1.09005 * 113.46780 * 92.37301 * 17 16 14 45 45 H 1.09008 * 114.01392 * 87.71258 * 18 17 16 46 46 H 0.97002 * 119.99676 * 179.97438 * 22 21 19 47 47 H 1.08995 * 113.46892 * 267.62438 * 27 16 14 48 48 H 1.09004 * 113.46772 * 38.07429 * 27 16 14 49 49 H 1.09001 * 113.80679 * 89.89381 * 28 8 6 50 50 H 1.08998 * 113.80624 * 318.35798 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.6315 -2.2427 0.9702 6 6 2.1710 -3.0284 2.1375 7 8 2.7865 -2.4632 3.0164 8 7 1.9695 -4.3593 2.2047 9 6 2.3429 -5.4137 3.1697 10 6 1.1447 -6.1916 2.6138 11 6 0.8268 -7.6757 2.7427 12 6 -0.1262 -6.6317 3.3320 13 1 -1.0755 -6.4709 2.8208 14 6 -0.1635 -6.4910 4.8319 15 8 0.7939 -6.0376 5.4224 16 7 -1.2608 -6.8689 5.5172 17 6 -2.5761 -7.4350 5.1817 18 6 -3.1263 -6.7754 6.4506 19 6 -4.1000 -7.6290 7.2217 20 1 -3.7490 -8.2499 8.0327 21 6 -5.4386 -7.6172 6.8919 22 7 -5.8658 -6.8614 5.9040 23 14 -6.6453 -8.6758 7.8472 24 1 -6.6250 -8.2807 9.2785 25 1 -8.0125 -8.4849 7.2999 26 1 -6.2576 -10.1038 7.7224 27 6 -1.6722 -6.8909 6.9290 28 6 1.2868 -5.3461 1.3429 29 1 -0.3633 0.4512 0.9234 30 1 -0.3633 0.5741 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0829 1.3432 -0.0709 33 1 1.5898 1.9163 -0.8523 34 1 1.7045 1.8723 0.9234 35 1 1.5612 -0.3873 2.0627 36 1 3.0797 -0.6612 1.1755 37 1 2.0658 -2.6214 0.0450 38 1 0.5472 -2.3475 0.9322 39 1 2.2292 -5.1163 4.2121 40 1 3.3055 -5.8815 2.9628 41 1 1.4266 -8.2605 3.4401 42 1 0.5044 -8.2015 1.8440 43 1 -3.0018 -7.0295 4.2638 44 1 -2.6006 -8.5243 5.2130 45 1 -3.4692 -5.7510 6.3052 46 1 -6.8075 -6.8534 5.6717 47 1 -1.4537 -7.8339 7.4301 48 1 -1.3309 -6.0235 7.4941 49 1 1.9335 -5.7925 0.5875 50 1 0.3371 -4.9952 0.9392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269029502.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:22 Heat of formation + Delta-G solvation = 19.988889 kcal Electronic energy + Delta-G solvation = -28652.759365 eV Core-core repulsion = 24683.005509 eV Total energy + Delta-G solvation = -3969.753856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.86432 -40.91067 -39.76426 -38.55828 -38.11490 -35.55948 -34.64935 -32.59281 -31.11320 -29.07867 -28.51801 -27.44870 -27.24811 -26.72220 -25.55728 -24.53806 -22.24776 -22.01653 -20.75810 -19.95616 -19.31271 -18.75093 -18.14611 -18.09047 -17.24324 -17.03878 -16.66343 -16.56179 -16.32039 -16.12088 -15.86853 -15.54900 -15.25831 -15.17383 -14.65626 -14.37038 -14.17709 -13.96500 -13.91353 -13.42449 -13.31684 -13.28160 -13.21196 -13.13941 -12.82066 -12.72685 -12.64242 -12.62180 -12.46657 -12.19204 -12.00080 -11.87011 -11.76021 -11.37938 -11.32903 -11.07255 -10.81751 -10.61980 -10.49137 -9.77912 -9.54941 -9.44413 -8.17075 -6.28316 1.47053 1.49017 1.50377 1.54837 1.57477 1.70714 1.91871 2.45824 2.75633 2.91326 3.09686 3.14386 3.33975 3.61178 3.71147 3.81509 3.90289 4.01618 4.22919 4.25249 4.30384 4.36688 4.38410 4.44843 4.48563 4.50787 4.53380 4.59996 4.61382 4.65134 4.67543 4.78382 4.80116 4.84242 4.84682 4.89424 4.91991 4.94310 4.97618 4.99572 5.02805 5.03346 5.14216 5.57956 5.80346 5.91830 5.99569 6.22229 6.67390 6.79727 6.91942 7.04919 7.17120 7.41706 8.92792 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013088 B = 0.002289 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.909855 B =12230.145477 C =13468.103882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.550 5.550 3 C 0.022 3.978 4 C 0.073 3.927 5 C -0.116 4.116 6 C 0.527 3.473 7 O -0.599 6.599 8 N -0.648 5.648 9 C 0.129 3.871 10 C -0.147 4.147 11 C -0.090 4.090 12 C -0.168 4.168 13 H 0.140 0.860 14 C 0.550 3.450 15 O -0.594 6.594 16 N -0.643 5.643 17 C 0.120 3.880 18 C 0.021 3.979 19 C -0.529 4.529 20 H 0.066 0.934 21 C 0.022 3.978 22 N -0.918 5.918 23 Si 0.959 3.041 24 H -0.274 1.274 25 H -0.286 1.286 26 H -0.265 1.265 27 C 0.103 3.897 28 C 0.157 3.843 29 H 0.017 0.983 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.020 0.980 35 H 0.018 0.982 36 H 0.072 0.928 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.154 0.846 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.034 0.966 46 H 0.265 0.735 47 H 0.085 0.915 48 H 0.047 0.953 49 H 0.138 0.862 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.804 3.272 -18.826 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.273 5.273 3 C -0.126 4.126 4 C -0.055 4.055 5 C -0.155 4.155 6 C 0.318 3.682 7 O -0.481 6.481 8 N -0.382 5.382 9 C 0.007 3.993 10 C -0.149 4.149 11 C -0.128 4.128 12 C -0.189 4.189 13 H 0.157 0.843 14 C 0.342 3.658 15 O -0.477 6.477 16 N -0.375 5.375 17 C -0.002 4.002 18 C 0.002 3.998 19 C -0.567 4.567 20 H 0.084 0.916 21 C -0.179 4.179 22 N -0.556 5.556 23 Si 0.784 3.216 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.190 1.190 27 C -0.020 4.020 28 C 0.037 3.963 29 H 0.036 0.964 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.038 0.962 35 H 0.036 0.964 36 H 0.091 0.909 37 H 0.145 0.855 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.172 0.828 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.052 0.948 46 H 0.074 0.926 47 H 0.103 0.897 48 H 0.066 0.934 49 H 0.155 0.845 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.825 3.926 -18.738 23.043 hybrid contribution -1.062 0.299 2.041 2.320 sum 11.763 4.224 -16.697 20.857 Atomic orbital electron populations 1.22564 0.86583 1.03272 1.00894 1.62043 1.08843 1.14635 1.41823 1.22452 1.01205 0.87957 1.00994 1.21726 1.00338 0.92419 0.91062 1.21513 1.03489 0.94022 0.96507 1.20985 0.78675 0.80760 0.87774 1.90686 1.44571 1.69828 1.43021 1.50057 1.56031 1.05122 1.27026 1.22814 0.97343 0.84371 0.94771 1.22494 0.95138 0.98554 0.98665 1.23038 0.97287 0.89333 1.03113 1.22062 0.97479 1.09681 0.89681 0.84272 1.20005 0.79690 0.76680 0.89419 1.90595 1.36160 1.48908 1.72049 1.49975 1.15603 1.61214 1.10748 1.23252 0.77744 0.98650 1.00574 1.20183 0.89934 0.96352 0.93357 1.21156 0.92472 1.25727 1.17343 0.91589 1.25753 0.99991 0.96347 0.95760 1.70047 1.16083 1.39870 1.29581 0.85599 0.77651 0.79563 0.78786 1.19975 1.21205 1.19001 1.23236 0.94921 1.00549 0.83252 1.23058 0.98680 0.82958 0.91639 0.96427 0.89656 0.90284 0.90933 0.89534 0.96173 0.96399 0.90933 0.85465 0.87487 0.92155 0.87519 0.88370 0.82843 0.91847 0.89725 0.94767 0.92586 0.89655 0.93397 0.84488 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.32 127.69 1.19 1.41 16 2 N -0.55 -9.48 5.02 -948.85 -4.76 -14.24 16 3 C 0.02 0.32 9.57 127.69 1.22 1.54 16 4 C 0.07 1.56 4.25 86.30 0.37 1.93 16 5 C -0.12 -2.16 5.37 29.85 0.16 -2.00 16 6 C 0.53 14.74 8.06 87.66 0.71 15.45 16 7 O -0.60 -23.04 16.71 -3.03 -0.05 -23.09 16 8 N -0.65 -15.72 3.61 -847.17 -3.06 -18.77 16 9 C 0.13 3.49 8.36 86.24 0.72 4.21 16 10 C -0.15 -3.04 3.04 -52.34 -0.16 -3.20 16 11 C -0.09 -1.53 10.23 30.42 0.31 -1.22 16 12 C -0.17 -4.37 6.02 -11.67 -0.07 -4.44 16 13 H 0.14 3.24 8.14 -2.38 -0.02 3.22 16 14 C 0.55 20.87 7.86 87.66 0.69 21.56 16 15 O -0.59 -26.59 14.94 -3.04 -0.05 -26.63 16 16 N -0.64 -25.73 3.69 -858.80 -3.17 -28.91 16 17 C 0.12 4.82 7.98 83.09 0.66 5.48 16 18 C 0.02 0.99 3.77 -11.29 -0.04 0.95 16 19 C -0.53 -26.56 8.82 25.60 0.23 -26.33 16 20 H 0.07 3.20 7.81 -2.91 -0.02 3.18 16 21 C 0.02 1.12 5.46 84.65 0.46 1.58 16 22 N -0.92 -49.40 13.26 21.45 0.28 -49.12 16 23 Si 0.96 40.14 29.54 68.60 2.03 42.17 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 27 C 0.10 4.37 8.19 83.19 0.68 5.05 16 28 C 0.16 2.14 8.63 86.24 0.74 2.88 16 29 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 31 H 0.08 1.03 6.47 -2.39 -0.02 1.01 16 32 H 0.07 1.00 8.12 -2.39 -0.02 0.99 16 33 H 0.09 0.97 8.12 -2.39 -0.02 0.95 16 34 H 0.02 0.32 8.14 -2.38 -0.02 0.30 16 35 H 0.02 0.47 8.08 -2.39 -0.02 0.45 16 36 H 0.07 1.67 8.02 -2.39 -0.02 1.65 16 37 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.11 1.70 6.55 -2.39 -0.02 1.69 16 39 H 0.06 2.27 5.94 -2.39 -0.01 2.26 16 40 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.08 3.24 8.10 -2.38 -0.02 3.22 16 45 H 0.03 1.82 8.11 -2.38 -0.02 1.80 16 46 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 47 H 0.09 3.40 8.10 -2.39 -0.02 3.38 16 48 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 49 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -73.79 412.42 0.01 -73.78 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.91 Total: 19.97 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 7.87 Total: 24.85 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -10.71 Total: -111.04 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -0.10 Total: -49.73 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -73.79 0.01 -73.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269029502.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.768 kcal (2) G-P(sol) polarization free energy of solvation -73.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds