Wall clock time and date at job start Tue Mar 31 2020 18:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00283 * 2 1 4 4 C 1.46906 * 110.99888 * 123.94961 * 2 1 3 5 5 C 1.53000 * 109.47072 * 170.00122 * 4 2 1 6 6 C 1.50696 * 109.47198 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99867 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00488 * 180.02562 * 6 5 4 9 9 C 1.48147 * 127.83591 * 0.02562 * 8 6 5 10 10 C 1.54385 * 104.61776 * 219.58796 * 9 8 6 11 11 H 1.09004 * 117.61393 * 117.23179 * 10 9 8 12 12 C 1.52998 * 118.12431 * 272.80745 * 10 9 8 13 13 C 1.53004 * 60.55484 * 91.54157 * 12 10 9 14 14 C 1.50699 * 119.53614 * 111.76912 * 13 12 10 15 15 O 1.21281 * 120.00324 * 289.29005 * 14 13 12 16 16 N 1.34779 * 119.99993 * 109.29815 * 14 13 12 17 17 C 1.47071 * 136.05596 * 359.61883 * 16 14 13 18 18 C 1.53243 * 88.08284 * 207.20890 * 17 16 14 19 19 C 1.50695 * 114.50616 * 220.45778 * 18 17 16 20 20 H 1.08006 * 119.99833 * 93.84704 * 19 18 17 21 21 C 1.37875 * 120.00317 * 273.84691 * 19 18 17 22 22 N 1.31520 * 119.99844 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00339 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46997 * 90.00048 * 23 21 19 25 25 H 1.48496 * 109.47345 * 209.99905 * 23 21 19 26 26 H 1.48496 * 109.47215 * 330.00622 * 23 21 19 27 27 C 1.47068 * 136.05854 * 180.02562 * 16 14 13 28 28 C 1.48143 * 127.84100 * 179.70323 * 8 6 5 29 29 H 1.08997 * 109.47334 * 296.05250 * 1 2 3 30 30 H 1.09000 * 109.46674 * 56.05127 * 1 2 3 31 31 H 1.08995 * 109.47296 * 176.04950 * 1 2 3 32 32 H 1.09004 * 109.47457 * 183.95363 * 3 2 1 33 33 H 1.09001 * 109.46615 * 303.95014 * 3 2 1 34 34 H 1.08990 * 109.47358 * 63.94680 * 3 2 1 35 35 H 1.08993 * 109.47164 * 289.99976 * 4 2 1 36 36 H 1.08996 * 109.46920 * 50.00010 * 4 2 1 37 37 H 1.09002 * 109.46936 * 299.99708 * 5 4 2 38 38 H 1.08996 * 109.47340 * 60.00144 * 5 4 2 39 39 H 1.09001 * 110.40278 * 338.37374 * 9 8 6 40 40 H 1.08994 * 110.40780 * 100.68384 * 9 8 6 41 41 H 1.08997 * 117.44448 * 199.18915 * 12 10 9 42 42 H 1.08996 * 117.43840 * 343.93951 * 12 10 9 43 43 H 1.09000 * 113.46690 * 321.94618 * 17 16 14 44 44 H 1.08998 * 113.46304 * 92.38695 * 17 16 14 45 45 H 1.08999 * 114.01533 * 87.71806 * 18 17 16 46 46 H 0.96995 * 119.99968 * 179.97438 * 22 21 19 47 47 H 1.09001 * 113.46909 * 267.61834 * 27 16 14 48 48 H 1.09005 * 113.46708 * 38.00058 * 27 16 14 49 49 H 1.09003 * 110.40792 * 259.19468 * 28 8 6 50 50 H 1.09004 * 110.40828 * 21.62507 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.5044 -0.9553 0.9705 6 6 4.0444 -1.7415 2.1372 7 8 3.2960 -2.1134 3.0162 8 7 5.3590 -2.0306 2.2045 9 6 6.4205 -1.6651 1.2378 10 6 7.3270 -2.9126 1.1645 11 1 7.4049 -3.4249 0.2055 12 6 8.4624 -3.0400 2.1821 13 6 7.0962 -3.6517 2.4990 14 6 6.9499 -5.1502 2.5623 15 8 7.0125 -5.8092 1.5460 16 7 6.7493 -5.7582 3.7483 17 6 6.6251 -5.3305 5.1500 18 6 7.1487 -6.7100 5.5636 19 6 6.4524 -7.3107 6.7574 20 1 5.6186 -7.9822 6.6148 21 6 6.8797 -7.0031 8.0317 22 7 7.8948 -6.1851 8.2053 23 14 6.0161 -7.7472 9.5115 24 1 6.6682 -9.0322 9.8708 25 1 6.1044 -6.8094 10.6594 26 1 4.5893 -7.9918 9.1807 27 6 6.5654 -7.1420 4.2113 28 6 6.0716 -2.7803 3.2651 29 1 -0.3634 0.4513 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0829 1.3432 -0.0709 33 1 1.5899 1.9162 -0.8525 34 1 1.7044 1.8724 0.9231 35 1 1.7975 -0.2247 2.0628 36 1 1.5089 -1.7405 1.1758 37 1 3.7023 -1.4966 0.0453 38 1 3.9909 0.0193 0.9324 39 1 5.9874 -1.4520 0.2605 40 1 6.9836 -0.8046 1.5990 41 1 9.2763 -3.7247 1.9437 42 1 8.7492 -2.1422 2.7296 43 1 7.2974 -4.5148 5.4161 44 1 5.5958 -5.1466 5.4580 45 1 8.2353 -6.7728 5.6219 46 1 8.1951 -5.9684 9.1018 47 1 5.5201 -7.4459 4.2666 48 1 7.1865 -7.8635 3.6803 49 1 6.5824 -2.0925 3.9390 50 1 5.3750 -3.4096 3.8192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269029543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:32 Heat of formation + Delta-G solvation = 15.297776 kcal Electronic energy + Delta-G solvation = -29329.601339 eV Core-core repulsion = 25359.644061 eV Total energy + Delta-G solvation = -3969.957278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.88467 -39.44834 -38.52237 -37.50760 -36.76231 -33.72156 -32.70302 -31.65815 -29.80901 -28.35572 -27.93571 -26.82812 -25.44588 -25.02629 -24.60879 -22.63100 -21.44891 -21.21900 -19.77874 -19.35180 -18.17714 -17.24314 -16.84245 -16.36375 -16.23567 -15.96336 -15.55153 -15.34572 -15.07820 -14.77333 -14.67435 -14.54844 -14.11361 -13.84146 -13.39893 -13.29781 -12.89517 -12.73001 -12.51444 -12.39835 -12.34155 -12.11425 -11.98155 -11.90926 -11.80112 -11.77117 -11.50720 -11.28349 -11.23000 -10.94015 -10.85347 -10.61090 -10.37310 -10.30652 -9.80320 -9.62206 -9.23405 -9.05659 -8.84310 -8.73270 -8.58977 -7.90325 -6.18990 -4.24283 2.50308 2.68224 2.84528 3.24426 3.31758 3.34134 3.40846 3.57161 3.64676 4.28923 4.33517 4.39688 4.53517 4.57109 4.72630 4.79314 4.82005 4.84954 4.99603 5.03526 5.11208 5.17342 5.19942 5.22742 5.26588 5.34022 5.53113 5.56136 5.56245 5.58123 5.64731 5.69832 5.76078 5.83822 5.95777 6.01609 6.04109 6.15917 6.25719 6.42373 6.56457 6.62803 6.63941 6.64718 6.81383 7.39061 7.53935 7.78946 8.02701 8.17142 8.46344 8.71165 8.79759 9.42681 10.90798 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012630 B = 0.002683 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.427469 B =10432.904040 C =11728.436262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.019 3.981 4 C 0.069 3.931 5 C -0.131 4.131 6 C 0.535 3.465 7 O -0.536 6.536 8 N -0.624 5.624 9 C 0.128 3.872 10 C -0.147 4.147 11 H 0.131 0.869 12 C -0.108 4.108 13 C -0.171 4.171 14 C 0.577 3.423 15 O -0.563 6.563 16 N -0.636 5.636 17 C 0.099 3.901 18 C 0.036 3.964 19 C -0.517 4.517 20 H 0.064 0.936 21 C 0.069 3.931 22 N -0.886 5.886 23 Si 0.896 3.104 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.272 1.272 27 C 0.100 3.900 28 C 0.144 3.856 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.264 0.736 47 H 0.074 0.926 48 H 0.058 0.942 49 H 0.084 0.916 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.865 16.429 -15.059 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.274 5.274 3 C -0.130 4.130 4 C -0.060 4.060 5 C -0.171 4.171 6 C 0.324 3.676 7 O -0.412 6.412 8 N -0.359 5.359 9 C 0.005 3.995 10 C -0.167 4.167 11 H 0.149 0.851 12 C -0.145 4.145 13 C -0.176 4.176 14 C 0.366 3.634 15 O -0.444 6.444 16 N -0.368 5.368 17 C -0.023 4.023 18 C 0.017 3.983 19 C -0.555 4.555 20 H 0.082 0.918 21 C -0.135 4.135 22 N -0.523 5.523 23 Si 0.723 3.277 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.197 1.197 27 C -0.021 4.021 28 C 0.022 3.978 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.102 0.898 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.118 15.886 -15.597 22.843 hybrid contribution -0.625 0.081 1.573 1.694 sum -5.742 15.966 -14.024 22.013 Atomic orbital electron populations 1.22368 0.86835 1.02577 1.00530 1.61966 1.08277 1.13872 1.43242 1.22468 1.00988 0.88896 1.00608 1.21853 0.93393 0.99346 0.91369 1.21595 0.96879 1.01039 0.97612 1.20274 0.79808 0.79860 0.87625 1.90751 1.56054 1.53629 1.40784 1.49281 1.06591 1.55487 1.24505 1.21929 0.88089 0.95667 0.93822 1.23721 1.00787 0.97475 0.94680 0.85098 1.23094 0.90239 1.01993 0.99216 1.22703 1.00433 0.93142 1.01297 1.18480 0.76733 0.86437 0.81787 1.90639 1.53874 1.65987 1.33883 1.49887 1.68178 1.12143 1.06584 1.23595 1.00696 1.02347 0.75694 1.20281 0.97680 0.90201 0.90145 1.20897 1.16207 1.28567 0.89798 0.91819 1.25020 0.94645 0.94648 0.99175 1.69948 1.25456 1.34281 1.22568 0.86533 0.80155 0.79031 0.81986 1.20479 1.21127 1.19667 1.23381 1.00624 0.82714 0.95423 1.21768 0.93080 0.93787 0.89188 0.95475 0.91269 0.91117 0.91166 0.91318 0.95497 0.93730 0.89743 0.87929 0.88903 0.89369 0.90167 0.87126 0.87667 0.92032 0.90750 0.91362 0.92639 0.90809 0.92393 0.89818 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.57 60.06 0.57 0.76 16 2 N -0.55 -4.83 5.02 -251.27 -1.26 -6.09 16 3 C 0.02 0.13 9.32 60.07 0.56 0.69 16 4 C 0.07 0.71 4.25 -3.82 -0.02 0.69 16 5 C -0.13 -1.25 4.60 -27.88 -0.13 -1.38 16 6 C 0.54 7.32 7.91 -10.99 -0.09 7.24 16 7 O -0.54 -9.59 16.25 5.56 0.09 -9.50 16 8 N -0.62 -7.98 3.31 -169.06 -0.56 -8.54 16 9 C 0.13 1.16 6.71 -2.41 -0.02 1.15 16 10 C -0.15 -1.69 6.78 -89.22 -0.60 -2.29 16 11 H 0.13 1.55 8.14 -51.93 -0.42 1.12 16 12 C -0.11 -1.23 9.86 -26.73 -0.26 -1.49 16 13 C -0.17 -2.58 2.70 -154.04 -0.42 -3.00 16 14 C 0.58 11.46 7.70 -10.98 -0.08 11.38 16 15 O -0.56 -12.74 17.59 5.56 0.10 -12.64 16 16 N -0.64 -13.17 3.64 -185.37 -0.68 -13.84 16 17 C 0.10 2.10 6.60 -8.63 -0.06 2.04 16 18 C 0.04 0.85 3.76 -91.40 -0.34 0.50 16 19 C -0.52 -13.22 8.84 -34.44 -0.30 -13.52 16 20 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 21 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -24.00 13.26 55.43 0.74 -23.26 16 23 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.10 2.14 8.18 -8.51 -0.07 2.07 16 28 C 0.14 2.11 6.16 -2.19 -0.01 2.09 16 29 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.07 0.42 6.47 -51.93 -0.34 0.09 16 33 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 35 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.08 0.98 8.02 -51.93 -0.42 0.57 16 37 H 0.10 0.91 7.95 -51.93 -0.41 0.49 16 38 H 0.09 0.68 6.55 -51.93 -0.34 0.34 16 39 H 0.09 0.61 7.30 -51.93 -0.38 0.23 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.07 1.60 8.10 -51.93 -0.42 1.18 16 45 H 0.07 1.73 8.11 -51.93 -0.42 1.31 16 46 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 47 H 0.07 1.54 8.10 -51.93 -0.42 1.12 16 48 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.09 1.67 6.82 -51.93 -0.35 1.31 16 LS Contribution 407.60 15.07 6.14 6.14 Total: -1.00 -32.15 407.60 -10.35 -42.51 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -8.54 Total: 1.39 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -1.37 Total: 8.62 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -1.76 Total: -51.74 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.19 Total: -22.14 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.15 -10.35 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269029543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.804 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds