Wall clock time and date at job start Tue Mar 31 2020 18:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00035 * 2 1 4 4 O 1.21279 * 119.99588 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99939 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.47042 * 179.97438 * 5 3 2 7 7 H 1.09005 * 110.34379 * 305.70067 * 6 5 3 8 8 C 1.51093 * 110.38522 * 67.98641 * 6 5 3 9 9 C 1.30732 * 110.98658 * 135.16101 * 8 6 5 10 10 C 1.51098 * 111.13670 * 0.15483 * 9 8 6 11 11 C 1.54628 * 104.72863 * 343.46736 * 10 9 8 12 12 C 1.46509 * 120.00094 * 180.02562 * 2 1 3 13 13 H 1.08995 * 110.28424 * 180.66968 * 12 2 1 14 14 C 1.54257 * 110.32213 * 58.54234 * 12 2 1 15 15 C 1.54381 * 105.14978 * 240.95067 * 14 12 2 16 16 N 1.48720 * 104.51692 * 336.27274 * 15 14 12 17 17 C 1.46900 * 111.01831 * 158.96284 * 16 15 14 18 18 C 1.50706 * 109.46840 * 54.48842 * 17 16 15 19 19 O 1.21289 * 120.00010 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00231 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00408 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99621 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00279 * 180.02562 * 21 20 18 24 24 N 1.31403 * 119.99894 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99885 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47146 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.46874 * 119.99819 * 25 23 21 28 28 H 1.48498 * 109.46929 * 239.99709 * 25 23 21 29 29 C 1.48567 * 104.28820 * 39.36098 * 16 15 14 30 30 H 1.09003 * 109.47407 * 269.99376 * 1 2 3 31 31 H 1.08993 * 109.47428 * 29.99520 * 1 2 3 32 32 H 1.09007 * 109.46915 * 149.99772 * 1 2 3 33 33 H 1.08993 * 109.46893 * 299.99757 * 5 3 2 34 34 H 1.09007 * 109.46813 * 59.99251 * 5 3 2 35 35 H 1.07994 * 124.45665 * 315.22687 * 8 6 5 36 36 H 1.08002 * 124.41322 * 180.02562 * 9 8 6 37 37 H 1.08997 * 110.38718 * 224.65002 * 10 9 8 38 38 H 1.09006 * 110.47801 * 102.32621 * 10 9 8 39 39 H 1.09003 * 111.03857 * 266.60123 * 11 10 9 40 40 H 1.09002 * 111.03961 * 142.66469 * 11 10 9 41 41 H 1.09002 * 110.32715 * 359.90123 * 14 12 2 42 42 H 1.08998 * 110.32251 * 122.00649 * 14 12 2 43 43 H 1.09004 * 110.40867 * 94.98012 * 15 14 12 44 44 H 1.08996 * 110.41187 * 217.42234 * 15 14 12 45 45 H 1.09003 * 109.47294 * 174.49077 * 17 16 15 46 46 H 1.09000 * 109.47223 * 294.49440 * 17 16 15 47 47 H 0.97004 * 119.99626 * 0.02562 * 20 18 17 48 48 H 0.96998 * 120.00432 * 179.97438 * 24 23 21 49 49 H 1.08999 * 110.41133 * 201.79165 * 29 16 15 50 50 H 1.09001 * 110.41003 * 79.35561 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 1 3.0792 3.5353 0.8310 8 6 3.1251 3.6909 -1.3119 9 6 3.1910 4.9167 -1.7614 10 6 2.5042 5.8795 -0.8209 11 6 1.6299 4.9849 0.0881 12 6 2.1975 -1.2688 -0.0006 13 1 3.2718 -1.0849 0.0115 14 6 1.8116 -2.1097 -1.2349 15 6 1.2012 -3.4077 -0.6640 16 7 1.7790 -3.5222 0.7015 17 6 0.9542 -4.3912 1.5515 18 6 0.7683 -5.7252 0.8754 19 8 1.2736 -5.9318 -0.2077 20 7 0.0413 -6.6890 1.4747 21 6 -0.1273 -7.9026 0.8599 22 1 0.3220 -8.0863 -0.1049 23 6 -0.8773 -8.8961 1.4775 24 7 -1.4243 -8.6724 2.6511 25 14 -1.1076 -10.5495 0.6394 26 1 -0.3964 -10.5471 -0.6642 27 1 -0.5551 -11.6236 1.5033 28 1 -2.5550 -10.7921 0.4127 29 6 1.7869 -2.1279 1.2145 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5137 32 1 -0.3633 -0.8900 -0.5139 33 1 0.7584 2.5302 -0.8891 34 1 0.7589 2.5298 0.8908 35 1 3.5462 2.8315 -1.8124 36 1 3.6750 5.2037 -2.6832 37 1 1.8807 6.5770 -1.3802 38 1 3.2395 6.4215 -0.2261 39 1 0.6178 4.8964 -0.3069 40 1 1.6174 5.3604 1.1113 41 1 1.0759 -1.5792 -1.8394 42 1 2.6963 -2.3371 -1.8296 43 1 0.1155 -3.3260 -0.6114 44 1 1.4898 -4.2637 -1.2739 45 1 1.4493 -4.5363 2.5117 46 1 -0.0186 -3.9260 1.7110 47 1 -0.3625 -6.5238 2.3410 48 1 -1.9482 -9.3657 3.0822 49 1 2.5156 -2.0227 2.0183 50 1 0.7931 -1.8451 1.5618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269207962.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:42 Heat of formation + Delta-G solvation = -40.019990 kcal Electronic energy + Delta-G solvation = -28830.357445 eV Core-core repulsion = 24858.001408 eV Total energy + Delta-G solvation = -3972.356037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.61817 -39.30009 -38.45269 -37.41577 -35.21637 -33.91658 -32.22946 -31.38718 -30.83768 -29.23162 -28.60778 -27.22464 -26.67124 -25.39074 -24.13879 -21.32435 -21.18464 -20.65810 -19.48270 -19.06699 -18.75312 -17.88700 -17.42301 -16.63512 -16.15007 -15.95464 -15.68859 -15.44535 -15.18304 -14.65377 -14.53618 -14.15625 -13.89540 -13.73715 -13.33899 -13.14645 -12.91180 -12.74766 -12.62177 -12.26934 -12.18009 -12.15076 -12.08064 -11.99432 -11.59197 -11.57498 -11.55672 -11.44038 -11.20619 -11.13051 -11.06602 -10.81489 -10.65439 -10.35587 -10.25397 -9.84094 -9.52937 -9.15081 -8.84654 -8.44478 -8.05780 -7.94415 -6.44892 -3.85725 2.04154 2.46156 2.75305 3.14139 3.25151 3.32250 3.86064 4.07721 4.14210 4.28568 4.31404 4.46810 4.54889 4.67310 4.75960 4.79501 4.89281 5.03262 5.07425 5.10051 5.17537 5.21213 5.22685 5.25352 5.31503 5.39301 5.43975 5.47930 5.49405 5.54304 5.61067 5.70524 5.79981 5.82693 5.84964 5.94926 5.97204 6.04880 6.18687 6.24276 6.31549 6.39673 6.62040 6.65103 7.14364 7.20572 7.22850 7.52646 8.01413 8.02995 8.58115 9.14885 9.50437 10.01937 10.72817 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.040215 B = 0.001809 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.098619 B =15477.790557 C =15679.681637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.610 5.610 3 C 0.514 3.486 4 O -0.537 6.537 5 C -0.131 4.131 6 C -0.055 4.055 7 H 0.090 0.910 8 C -0.141 4.141 9 C -0.183 4.183 10 C -0.099 4.099 11 C -0.122 4.122 12 C 0.136 3.864 13 H 0.110 0.890 14 C -0.136 4.136 15 C 0.037 3.963 16 N -0.486 5.486 17 C 0.036 3.964 18 C 0.442 3.558 19 O -0.580 6.580 20 N -0.562 5.562 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C 0.022 3.978 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.117 0.883 45 H 0.091 0.909 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.083 0.917 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 26.762 -3.175 26.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C 0.302 3.698 4 O -0.413 6.413 5 C -0.171 4.171 6 C -0.073 4.073 7 H 0.108 0.892 8 C -0.158 4.158 9 C -0.201 4.201 10 C -0.136 4.136 11 C -0.160 4.160 12 C 0.032 3.968 13 H 0.128 0.872 14 C -0.175 4.175 15 C -0.091 4.091 16 N -0.210 5.210 17 C -0.096 4.096 18 C 0.228 3.772 19 O -0.465 6.465 20 N -0.198 5.198 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.107 4.107 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.135 0.865 45 H 0.109 0.891 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.101 0.899 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.503 26.237 -3.776 26.625 hybrid contribution -1.445 -0.580 0.374 1.601 sum 1.058 25.657 -3.402 25.903 Atomic orbital electron populations 1.21808 0.79726 1.03478 1.02061 1.47998 1.06903 1.05964 1.73508 1.20720 0.88156 0.85270 0.75643 1.90697 1.13913 1.87275 1.49440 1.21759 0.99129 0.91952 1.04215 1.20842 0.95804 0.92974 0.97724 0.89199 1.23367 0.98822 0.97694 0.95958 1.23304 1.01958 0.95234 0.99622 1.21325 0.98163 0.97601 0.96504 1.22560 0.98872 0.94438 1.00106 1.21844 0.98223 0.81867 0.94827 0.87151 1.22771 1.01707 0.95955 0.97056 1.23352 0.96126 0.98336 0.91254 1.65243 1.47839 1.05667 1.02247 1.22083 0.95968 0.93967 0.97595 1.19688 0.84105 0.85837 0.87598 1.90452 1.52496 1.81294 1.22222 1.41857 1.45345 1.12259 1.20349 1.19757 1.29946 0.88810 1.04345 0.87805 1.25269 0.96638 1.00054 0.95972 1.69615 1.34390 1.35171 1.15043 0.85796 0.77959 0.81233 0.79336 1.19202 1.20713 1.20784 1.23482 1.00594 0.89313 0.97319 0.92387 0.90870 0.90583 0.88786 0.88765 0.85671 0.86096 0.91382 0.90884 0.90908 0.90815 0.91209 0.90339 0.94724 0.86485 0.89108 0.93399 0.77464 0.91895 0.89853 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 8.88 59.85 0.53 1.08 16 2 N -0.61 -6.34 2.79 -172.35 -0.48 -6.83 16 3 C 0.51 5.64 7.45 -10.98 -0.08 5.55 16 4 O -0.54 -7.81 14.15 5.56 0.08 -7.73 16 5 C -0.13 -0.97 3.66 -27.88 -0.10 -1.07 16 6 C -0.05 -0.45 2.52 -90.72 -0.23 -0.68 16 7 H 0.09 0.87 7.96 -51.93 -0.41 0.46 16 8 C -0.14 -1.32 9.24 -35.76 -0.33 -1.65 16 9 C -0.18 -1.47 10.78 -35.76 -0.39 -1.85 16 10 C -0.10 -0.64 6.81 -26.83 -0.18 -0.82 16 11 C -0.12 -0.74 6.71 -25.02 -0.17 -0.91 16 12 C 0.14 1.72 3.46 -66.55 -0.23 1.49 16 13 H 0.11 1.59 6.96 -51.93 -0.36 1.23 16 14 C -0.14 -1.77 6.17 -25.35 -0.16 -1.93 16 15 C 0.04 0.60 5.32 -2.09 -0.01 0.59 16 16 N -0.49 -8.16 5.33 -231.26 -1.23 -9.39 16 17 C 0.04 0.63 5.55 -4.97 -0.03 0.61 16 18 C 0.44 10.27 7.50 -10.98 -0.08 10.19 16 19 O -0.58 -15.20 13.24 5.55 0.07 -15.13 16 20 N -0.56 -14.06 5.29 -10.96 -0.06 -14.11 16 21 C -0.30 -8.23 9.68 -14.94 -0.14 -8.38 16 22 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 25 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 C 0.02 0.30 6.10 -2.18 -0.01 0.28 16 30 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 31 H 0.07 0.38 6.44 -51.93 -0.33 0.05 16 32 H 0.08 0.63 6.83 -51.92 -0.35 0.27 16 33 H 0.09 0.58 7.40 -51.93 -0.38 0.19 16 34 H 0.09 0.53 8.11 -51.93 -0.42 0.11 16 35 H 0.13 1.36 7.44 -52.49 -0.39 0.97 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.38 7.91 -51.93 -0.41 -0.03 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.80 6.97 -51.93 -0.36 0.44 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 44 H 0.12 2.32 6.06 -51.93 -0.31 2.00 16 45 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.05 0.77 7.88 -51.93 -0.41 0.36 16 47 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.05 0.56 6.57 -51.93 -0.34 0.22 16 LS Contribution 392.75 15.07 5.92 5.92 Total: -1.00 -32.03 392.75 -9.83 -41.86 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -8.12 Total: 10.13 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -1.71 Total: 2.99 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -1.05 Total: -53.87 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.15 Total: -22.85 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.03 -9.83 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269207962.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.840 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds