Wall clock time and date at job start Tue Mar 31 2020 18:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00035 * 2 1 4 4 O 1.21279 * 119.99588 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99939 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.47042 * 179.97438 * 5 3 2 7 7 H 1.09005 * 110.34379 * 305.70067 * 6 5 3 8 8 C 1.51093 * 110.38522 * 67.98641 * 6 5 3 9 9 C 1.30732 * 110.98658 * 135.16101 * 8 6 5 10 10 C 1.51098 * 111.13670 * 0.15483 * 9 8 6 11 11 C 1.54628 * 104.72863 * 343.46736 * 10 9 8 12 12 C 1.46509 * 120.00094 * 180.02562 * 2 1 3 13 13 H 1.08995 * 110.28424 * 180.66968 * 12 2 1 14 14 C 1.54257 * 110.32213 * 58.54234 * 12 2 1 15 15 C 1.54381 * 105.14978 * 240.95067 * 14 12 2 16 16 N 1.48720 * 104.51692 * 336.27274 * 15 14 12 17 17 C 1.46900 * 111.01831 * 158.96284 * 16 15 14 18 18 C 1.50706 * 109.46840 * 54.48842 * 17 16 15 19 19 O 1.21289 * 120.00010 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00231 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00408 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99621 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00279 * 180.02562 * 21 20 18 24 24 N 1.31403 * 119.99894 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99885 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47146 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.46874 * 119.99819 * 25 23 21 28 28 H 1.48498 * 109.46929 * 239.99709 * 25 23 21 29 29 C 1.48567 * 104.28820 * 39.36098 * 16 15 14 30 30 H 1.09003 * 109.47407 * 269.99376 * 1 2 3 31 31 H 1.08993 * 109.47428 * 29.99520 * 1 2 3 32 32 H 1.09007 * 109.46915 * 149.99772 * 1 2 3 33 33 H 1.08993 * 109.46893 * 299.99757 * 5 3 2 34 34 H 1.09007 * 109.46813 * 59.99251 * 5 3 2 35 35 H 1.07994 * 124.45665 * 315.22687 * 8 6 5 36 36 H 1.08002 * 124.41322 * 180.02562 * 9 8 6 37 37 H 1.08997 * 110.38718 * 224.65002 * 10 9 8 38 38 H 1.09006 * 110.47801 * 102.32621 * 10 9 8 39 39 H 1.09003 * 111.03857 * 266.60123 * 11 10 9 40 40 H 1.09002 * 111.03961 * 142.66469 * 11 10 9 41 41 H 1.09002 * 110.32715 * 359.90123 * 14 12 2 42 42 H 1.08998 * 110.32251 * 122.00649 * 14 12 2 43 43 H 1.09004 * 110.40867 * 94.98012 * 15 14 12 44 44 H 1.08996 * 110.41187 * 217.42234 * 15 14 12 45 45 H 1.09003 * 109.47294 * 174.49077 * 17 16 15 46 46 H 1.09000 * 109.47223 * 294.49440 * 17 16 15 47 47 H 0.97004 * 119.99626 * 0.02562 * 20 18 17 48 48 H 0.96998 * 120.00432 * 179.97438 * 24 23 21 49 49 H 1.08999 * 110.41133 * 201.79165 * 29 16 15 50 50 H 1.09001 * 110.41003 * 79.35561 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 1 3.0792 3.5353 0.8310 8 6 3.1251 3.6909 -1.3119 9 6 3.1910 4.9167 -1.7614 10 6 2.5042 5.8795 -0.8209 11 6 1.6299 4.9849 0.0881 12 6 2.1975 -1.2688 -0.0006 13 1 3.2718 -1.0849 0.0115 14 6 1.8116 -2.1097 -1.2349 15 6 1.2012 -3.4077 -0.6640 16 7 1.7790 -3.5222 0.7015 17 6 0.9542 -4.3912 1.5515 18 6 0.7683 -5.7252 0.8754 19 8 1.2736 -5.9318 -0.2077 20 7 0.0413 -6.6890 1.4747 21 6 -0.1273 -7.9026 0.8599 22 1 0.3220 -8.0863 -0.1049 23 6 -0.8773 -8.8961 1.4775 24 7 -1.4243 -8.6724 2.6511 25 14 -1.1076 -10.5495 0.6394 26 1 -0.3964 -10.5471 -0.6642 27 1 -0.5551 -11.6236 1.5033 28 1 -2.5550 -10.7921 0.4127 29 6 1.7869 -2.1279 1.2145 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5137 32 1 -0.3633 -0.8900 -0.5139 33 1 0.7584 2.5302 -0.8891 34 1 0.7589 2.5298 0.8908 35 1 3.5462 2.8315 -1.8124 36 1 3.6750 5.2037 -2.6832 37 1 1.8807 6.5770 -1.3802 38 1 3.2395 6.4215 -0.2261 39 1 0.6178 4.8964 -0.3069 40 1 1.6174 5.3604 1.1113 41 1 1.0759 -1.5792 -1.8394 42 1 2.6963 -2.3371 -1.8296 43 1 0.1155 -3.3260 -0.6114 44 1 1.4898 -4.2637 -1.2739 45 1 1.4493 -4.5363 2.5117 46 1 -0.0186 -3.9260 1.7110 47 1 -0.3625 -6.5238 2.3410 48 1 -1.9482 -9.3657 3.0822 49 1 2.5156 -2.0227 2.0183 50 1 0.7931 -1.8451 1.5618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269207962.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:41 Heat of formation + Delta-G solvation = -61.559502 kcal Electronic energy + Delta-G solvation = -28831.291468 eV Core-core repulsion = 24858.001408 eV Total energy + Delta-G solvation = -3973.290060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52274 -40.55942 -39.52763 -38.66374 -36.33449 -35.78899 -33.41167 -33.01459 -31.92977 -29.83270 -29.64839 -28.43091 -27.63500 -26.45478 -25.64889 -22.52849 -22.17712 -21.29960 -21.05105 -20.15048 -19.80672 -19.45020 -18.28138 -17.74856 -17.42819 -16.96713 -16.65183 -16.45177 -16.33736 -16.15571 -15.88224 -15.69384 -15.15677 -14.92784 -14.42799 -14.18899 -14.04314 -13.71014 -13.58245 -13.44989 -13.29222 -13.26139 -12.95412 -12.81446 -12.74471 -12.66263 -12.63348 -12.42501 -12.36327 -12.25807 -12.09766 -12.04768 -11.98478 -11.75509 -11.66592 -11.47695 -10.72036 -10.25852 -10.01730 -9.76709 -9.66690 -9.40074 -8.47476 -5.95896 1.35943 1.39117 1.41780 1.55599 1.65021 1.92340 2.02947 2.28646 2.89051 3.19465 3.31002 3.45152 3.62794 3.74854 3.78579 3.95611 3.99143 4.06364 4.19360 4.24088 4.29192 4.35779 4.37955 4.46413 4.51544 4.53992 4.57782 4.65556 4.68917 4.70494 4.75451 4.78186 4.92127 4.98183 5.00477 5.03120 5.10153 5.12671 5.23205 5.30882 5.40846 5.44696 5.44882 5.70394 5.81796 5.91421 6.00029 6.07023 6.41311 6.59669 7.12336 7.20023 7.54576 8.10449 8.70093 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.040215 B = 0.001809 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.098619 B =15477.790557 C =15679.681637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.608 5.608 3 C 0.508 3.492 4 O -0.581 6.581 5 C -0.121 4.121 6 C -0.056 4.056 7 H 0.068 0.932 8 C -0.167 4.167 9 C -0.176 4.176 10 C -0.101 4.101 11 C -0.114 4.114 12 C 0.143 3.857 13 H 0.088 0.912 14 C -0.123 4.123 15 C 0.042 3.958 16 N -0.508 5.508 17 C 0.048 3.952 18 C 0.439 3.561 19 O -0.614 6.614 20 N -0.572 5.572 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.274 1.274 27 H -0.272 1.272 28 H -0.270 1.270 29 C 0.030 3.970 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.038 0.962 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.074 0.926 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.086 0.914 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.890 28.809 -2.491 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.341 5.341 3 C 0.298 3.702 4 O -0.461 6.461 5 C -0.161 4.161 6 C -0.074 4.074 7 H 0.086 0.914 8 C -0.185 4.185 9 C -0.194 4.194 10 C -0.138 4.138 11 C -0.152 4.152 12 C 0.038 3.962 13 H 0.106 0.894 14 C -0.162 4.162 15 C -0.086 4.086 16 N -0.233 5.233 17 C -0.083 4.083 18 C 0.227 3.773 19 O -0.501 6.501 20 N -0.209 5.209 21 C -0.461 4.461 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.195 1.195 29 C -0.098 4.098 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.118 0.882 36 H 0.144 0.856 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.056 0.944 44 H 0.094 0.906 45 H 0.126 0.874 46 H 0.092 0.908 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.104 0.896 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.466 28.307 -3.071 28.477 hybrid contribution -0.749 -1.161 0.118 1.387 sum -0.283 27.146 -2.953 27.308 Atomic orbital electron populations 1.22069 0.77488 1.04675 1.03405 1.48049 1.08150 1.04839 1.73038 1.21435 0.87851 0.86388 0.74492 1.90684 1.16091 1.87888 1.51425 1.21801 0.98811 0.89137 1.06322 1.20831 0.95817 0.94728 0.96054 0.91401 1.23326 1.00526 0.97475 0.97175 1.23575 1.00835 0.95190 0.99827 1.21395 0.98470 0.97538 0.96394 1.22567 0.99170 0.92595 1.00848 1.21534 0.97444 0.82970 0.94221 0.89374 1.22644 1.01607 0.94660 0.97323 1.23132 0.96352 0.98214 0.90862 1.65189 1.48002 1.07677 1.02442 1.21962 0.97804 0.91065 0.97498 1.20676 0.82318 0.87227 0.87086 1.90453 1.53348 1.82360 1.23891 1.41910 1.46209 1.12162 1.20592 1.19692 1.31522 0.90690 1.04242 0.90289 1.26019 0.95778 1.02895 0.96498 1.69669 1.34376 1.36321 1.15672 0.84877 0.78263 0.77172 0.78058 1.19874 1.19732 1.19522 1.23455 1.01818 0.87111 0.97425 0.90926 0.87988 0.91165 0.86781 0.86071 0.88208 0.85577 0.89838 0.90570 0.89250 0.89626 0.89223 0.91269 0.94382 0.90595 0.87404 0.90800 0.76993 0.91298 0.89565 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 8.88 127.77 1.13 1.89 16 2 N -0.61 -11.51 2.79 -817.58 -2.28 -13.80 16 3 C 0.51 10.56 7.45 87.66 0.65 11.22 16 4 O -0.58 -17.31 14.15 -3.03 -0.04 -17.35 16 5 C -0.12 -1.48 3.66 29.85 0.11 -1.37 16 6 C -0.06 -0.84 2.52 -10.86 -0.03 -0.86 16 7 H 0.07 1.30 7.96 -2.38 -0.02 1.28 16 8 C -0.17 -3.11 9.24 26.05 0.24 -2.87 16 9 C -0.18 -2.64 10.78 26.05 0.28 -2.36 16 10 C -0.10 -1.07 6.81 30.53 0.21 -0.86 16 11 C -0.11 -1.05 6.71 31.71 0.21 -0.84 16 12 C 0.14 3.53 3.46 45.88 0.16 3.69 16 13 H 0.09 2.61 6.96 -2.39 -0.02 2.59 16 14 C -0.12 -3.20 6.17 31.49 0.19 -3.01 16 15 C 0.04 1.39 5.32 86.42 0.46 1.85 16 16 N -0.51 -16.85 5.33 -885.57 -4.72 -21.58 16 17 C 0.05 1.66 5.55 85.56 0.47 2.14 16 18 C 0.44 20.74 7.50 87.66 0.66 21.40 16 19 O -0.61 -33.41 13.24 -3.06 -0.04 -33.45 16 20 N -0.57 -29.07 5.29 -306.98 -1.62 -30.69 16 21 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.74 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.14 13.05 21.66 0.28 -48.86 16 25 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 28 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 29 C 0.03 0.76 6.10 86.45 0.53 1.29 16 30 H 0.07 0.68 7.90 -2.39 -0.02 0.66 16 31 H 0.10 0.61 6.44 -2.39 -0.02 0.60 16 32 H 0.07 0.94 6.83 -2.38 -0.02 0.92 16 33 H 0.11 0.97 7.40 -2.39 -0.02 0.95 16 34 H 0.12 0.85 8.11 -2.38 -0.02 0.83 16 35 H 0.10 2.33 7.44 -2.91 -0.02 2.31 16 36 H 0.13 1.66 8.06 -2.91 -0.02 1.63 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.09 0.55 7.91 -2.39 -0.02 0.53 16 40 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.09 1.95 6.97 -2.39 -0.02 1.93 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.04 1.20 8.00 -2.38 -0.02 1.19 16 44 H 0.08 3.16 6.06 -2.39 -0.01 3.15 16 45 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 46 H 0.07 2.19 7.88 -2.39 -0.02 2.17 16 47 H 0.40 19.11 7.90 -92.71 -0.73 18.37 16 48 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 49 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.07 1.42 6.57 -2.39 -0.02 1.40 16 Total: -1.00 -72.59 392.75 0.37 -72.22 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: 0.21 Total: 35.53 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 6.56 Total: 13.24 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -8.35 Total: -114.93 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -0.08 Total: -50.80 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -72.59 0.37 -72.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269207962.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.659 kcal (2) G-P(sol) polarization free energy of solvation -72.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds