Wall clock time and date at job start Tue Mar 31 2020 18:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 C 1.52996 * 109.47159 * 179.72352 * 5 3 2 7 7 H 1.09003 * 110.34387 * 54.29250 * 6 5 3 8 8 C 1.51109 * 110.38402 * 292.01036 * 6 5 3 9 9 C 1.30724 * 110.98895 * 224.83781 * 8 6 5 10 10 C 1.51102 * 111.13712 * 359.84401 * 9 8 6 11 11 C 1.54632 * 110.38838 * 176.58600 * 6 5 3 12 12 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 13 13 H 1.09007 * 110.27214 * 179.29919 * 12 2 1 14 14 C 1.54592 * 110.31315 * 57.20976 * 12 2 1 15 15 C 1.55103 * 102.84439 * 219.18509 * 14 12 2 16 16 N 1.48534 * 103.28639 * 37.30505 * 15 14 12 17 17 C 1.46900 * 110.99911 * 200.33393 * 16 15 14 18 18 C 1.50697 * 109.47277 * 307.39305 * 17 16 15 19 19 O 1.21295 * 120.00007 * 359.97438 * 18 17 16 20 20 N 1.34769 * 120.00119 * 180.02562 * 18 17 16 21 21 C 1.37104 * 120.00288 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99577 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00427 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99615 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00051 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47335 * 90.00567 * 25 23 21 27 27 H 1.48505 * 109.47008 * 210.00206 * 25 23 21 28 28 H 1.48500 * 109.47217 * 330.00178 * 25 23 21 29 29 C 1.47904 * 105.81564 * 320.84505 * 16 15 14 30 30 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 31 31 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 32 32 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 33 33 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 34 34 H 1.08994 * 109.46990 * 59.72065 * 5 3 2 35 35 H 1.07997 * 124.44990 * 44.73515 * 8 6 5 36 36 H 1.07997 * 124.41375 * 179.97438 * 9 8 6 37 37 H 1.09000 * 110.38838 * 257.72541 * 10 9 8 38 38 H 1.09005 * 110.38973 * 135.34700 * 10 9 8 39 39 H 1.08996 * 111.03579 * 261.47542 * 11 6 5 40 40 H 1.08995 * 111.03643 * 25.37146 * 11 6 5 41 41 H 1.09007 * 110.72489 * 337.47881 * 14 12 2 42 42 H 1.08994 * 110.72784 * 100.76445 * 14 12 2 43 43 H 1.08994 * 110.59419 * 278.86752 * 15 14 12 44 44 H 1.09004 * 110.83023 * 155.84538 * 15 14 12 45 45 H 1.09000 * 109.47105 * 67.39305 * 17 16 15 46 46 H 1.08999 * 109.46993 * 187.39242 * 17 16 15 47 47 H 0.97000 * 120.00303 * 359.97438 * 20 18 17 48 48 H 0.97003 * 120.00009 * 179.97438 * 24 23 21 49 49 H 1.08999 * 109.91707 * 265.97645 * 29 16 15 50 50 H 1.09002 * 109.91131 * 144.68399 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 6 2.3798 3.6351 0.0120 7 1 3.0794 3.5396 -0.8184 8 6 3.1254 3.6838 1.3254 9 6 3.1914 4.9072 1.7813 10 6 2.5046 5.8750 0.8460 11 6 1.6302 4.9853 -0.0677 12 6 2.1974 -1.2688 -0.0006 13 1 3.2718 -1.0847 -0.0130 14 6 1.7858 -2.1255 -1.2197 15 6 1.7387 -3.5604 -0.6327 16 7 1.1904 -3.3531 0.7321 17 6 1.5101 -4.4896 1.6062 18 6 1.0728 -5.7709 0.9444 19 8 0.5461 -5.7403 -0.1478 20 7 1.2660 -6.9507 1.5665 21 6 0.8677 -8.1164 0.9647 22 1 0.3994 -8.0892 -0.0082 23 6 1.0673 -9.3329 1.6058 24 7 1.6376 -9.3659 2.7893 25 14 0.5239 -10.9209 0.7861 26 1 1.6352 -11.4569 -0.0402 27 1 0.1571 -11.9148 1.8268 28 1 -0.6525 -10.6537 -0.0797 29 6 1.8133 -2.1082 1.2320 30 1 -0.3633 0.0002 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 0.7588 2.5344 -0.8833 34 1 0.7590 2.5257 0.8966 35 1 3.5459 2.8216 1.8215 36 1 3.6755 5.1892 2.7046 37 1 3.2411 6.4186 0.2543 38 1 1.8811 6.5696 1.4090 39 1 1.6177 5.3662 -1.0889 40 1 0.6179 4.8946 0.3262 41 1 0.8038 -1.8270 -1.5871 42 1 2.5324 -2.0550 -2.0106 43 1 2.7402 -3.9878 -0.5841 44 1 1.0778 -4.1980 -1.2200 45 1 2.5852 -4.5206 1.7831 46 1 0.9887 -4.3751 2.5564 47 1 1.6869 -6.9752 2.4401 48 1 1.7766 -10.2151 3.2371 49 1 2.7051 -2.3462 1.8118 50 1 1.1019 -1.5587 1.8484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269207963.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:45 Heat of formation + Delta-G solvation = -39.739643 kcal Electronic energy + Delta-G solvation = -28822.738112 eV Core-core repulsion = 24850.394232 eV Total energy + Delta-G solvation = -3972.343880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.57689 -39.29070 -38.44614 -37.39125 -35.18972 -33.91205 -32.20107 -31.38360 -30.82312 -29.21530 -28.53686 -27.18994 -26.61123 -25.37545 -24.11993 -21.31281 -21.17107 -20.64021 -19.31479 -19.20013 -18.73635 -17.89985 -17.38417 -16.61787 -16.12472 -15.95510 -15.65135 -15.40519 -15.21718 -14.66868 -14.50111 -14.04944 -13.80090 -13.71932 -13.52658 -13.03790 -12.76196 -12.64170 -12.42563 -12.27972 -12.21699 -12.13213 -12.02087 -11.77777 -11.67227 -11.55880 -11.55597 -11.43540 -11.37402 -11.08964 -11.04495 -10.96155 -10.55840 -10.37444 -10.24295 -9.81839 -9.51390 -9.13772 -8.79557 -8.38066 -8.04229 -7.92401 -6.44300 -3.85307 2.05591 2.49115 2.83230 3.15949 3.25023 3.30655 3.86596 4.05935 4.17340 4.28388 4.30569 4.49254 4.57763 4.67837 4.82224 4.88612 4.95145 5.03412 5.07603 5.14740 5.21645 5.23312 5.27842 5.31860 5.37731 5.44903 5.45941 5.48886 5.55434 5.62734 5.64175 5.74841 5.80601 5.85803 5.87417 5.95572 5.97420 6.00510 6.23386 6.27051 6.33040 6.46705 6.64635 6.66591 7.16692 7.23147 7.30532 7.52822 8.03190 8.04550 8.58515 9.15104 9.50879 10.02273 10.73289 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.038690 B = 0.001817 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.519286 B =15405.362774 C =15697.429899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.606 5.606 3 C 0.512 3.488 4 O -0.542 6.542 5 C -0.130 4.130 6 C -0.055 4.055 7 H 0.089 0.911 8 C -0.140 4.140 9 C -0.184 4.184 10 C -0.099 4.099 11 C -0.122 4.122 12 C 0.130 3.870 13 H 0.104 0.896 14 C -0.134 4.134 15 C 0.039 3.961 16 N -0.493 5.493 17 C 0.036 3.964 18 C 0.442 3.558 19 O -0.581 6.581 20 N -0.561 5.561 21 C -0.300 4.300 22 H 0.104 0.896 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C 0.023 3.977 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.121 0.879 45 H 0.049 0.951 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.049 0.951 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 26.779 -2.326 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.339 5.339 3 C 0.301 3.699 4 O -0.419 6.419 5 C -0.170 4.170 6 C -0.073 4.073 7 H 0.107 0.893 8 C -0.158 4.158 9 C -0.201 4.201 10 C -0.136 4.136 11 C -0.160 4.160 12 C 0.026 3.974 13 H 0.122 0.878 14 C -0.173 4.173 15 C -0.088 4.088 16 N -0.218 5.218 17 C -0.096 4.096 18 C 0.228 3.772 19 O -0.466 6.466 20 N -0.197 5.197 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.106 4.106 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.139 0.861 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.068 0.932 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.592 26.657 -2.932 26.824 hybrid contribution 0.925 -1.110 0.496 1.528 sum 0.333 25.546 -2.436 25.664 Atomic orbital electron populations 1.21842 0.79190 1.03815 1.02177 1.47946 1.07202 1.05595 1.73135 1.20738 0.88127 0.85380 0.75662 1.90686 1.13991 1.87359 1.49858 1.21749 0.99093 0.91903 1.04261 1.20842 0.95808 0.93010 0.97678 0.89273 1.23365 0.98805 0.97699 0.95941 1.23303 1.01979 0.95238 0.99630 1.21328 0.98143 0.97600 0.96510 1.22558 0.98900 0.94455 1.00060 1.21993 0.97588 0.82561 0.95261 0.87828 1.22967 1.02152 0.95475 0.96740 1.23502 0.99329 0.95479 0.90526 1.64630 1.53892 1.00854 1.02409 1.22105 0.99189 0.91037 0.97248 1.19687 0.85547 0.84448 0.87548 1.90431 1.48121 1.86445 1.21632 1.41854 1.53404 1.04900 1.19553 1.19703 1.36677 0.82836 1.03724 0.87859 1.25274 0.97137 0.99636 0.95878 1.69613 1.43079 1.27531 1.13950 0.85848 0.79094 0.80716 0.78569 1.20424 1.20911 1.19394 1.23295 0.98348 0.92323 0.96615 0.92467 0.89463 0.91243 0.88768 0.88731 0.85704 0.86106 0.90915 0.91362 0.90848 0.90872 0.90331 0.91032 0.94431 0.86078 0.93266 0.89228 0.77440 0.91834 0.93243 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 8.89 59.85 0.53 1.13 16 2 N -0.61 -6.49 2.78 -172.38 -0.48 -6.96 16 3 C 0.51 5.73 7.45 -10.98 -0.08 5.65 16 4 O -0.54 -7.94 14.15 5.55 0.08 -7.86 16 5 C -0.13 -1.00 3.65 -27.88 -0.10 -1.10 16 6 C -0.05 -0.46 2.52 -90.72 -0.23 -0.69 16 7 H 0.09 0.88 7.96 -51.93 -0.41 0.46 16 8 C -0.14 -1.34 9.24 -35.75 -0.33 -1.67 16 9 C -0.18 -1.50 10.78 -35.75 -0.39 -1.88 16 10 C -0.10 -0.65 6.81 -26.83 -0.18 -0.83 16 11 C -0.12 -0.76 6.71 -25.01 -0.17 -0.93 16 12 C 0.13 1.64 3.39 -66.58 -0.23 1.41 16 13 H 0.10 1.44 6.96 -51.92 -0.36 1.08 16 14 C -0.13 -1.76 6.66 -24.78 -0.17 -1.92 16 15 C 0.04 0.64 5.31 -1.81 -0.01 0.64 16 16 N -0.49 -8.05 5.26 -231.78 -1.22 -9.26 16 17 C 0.04 0.64 5.52 -4.98 -0.03 0.61 16 18 C 0.44 10.22 7.49 -10.99 -0.08 10.14 16 19 O -0.58 -15.03 13.09 5.54 0.07 -14.96 16 20 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 21 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 25 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 C 0.02 0.31 5.85 -2.75 -0.02 0.29 16 30 H 0.06 0.43 7.88 -51.93 -0.41 0.02 16 31 H 0.09 0.83 6.87 -51.93 -0.36 0.48 16 32 H 0.07 0.40 6.43 -51.93 -0.33 0.07 16 33 H 0.09 0.55 8.11 -51.93 -0.42 0.13 16 34 H 0.09 0.61 7.39 -51.93 -0.38 0.22 16 35 H 0.13 1.38 7.44 -52.49 -0.39 0.99 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.39 7.91 -51.93 -0.41 -0.02 16 41 H 0.08 0.99 6.91 -51.92 -0.36 0.63 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.04 0.64 8.02 -51.93 -0.42 0.22 16 44 H 0.12 2.38 5.96 -51.93 -0.31 2.07 16 45 H 0.05 0.82 7.81 -51.93 -0.41 0.41 16 46 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 47 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.05 0.65 7.57 -51.93 -0.39 0.26 16 50 H 0.08 1.01 7.01 -51.93 -0.36 0.65 16 LS Contribution 392.33 15.07 5.91 5.91 Total: -1.00 -31.59 392.33 -9.80 -41.39 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -8.10 Total: 10.69 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -1.71 Total: 2.95 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -1.03 Total: -53.98 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.15 Total: -22.81 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.59 -9.80 -41.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269207963.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.650 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds