Wall clock time and date at job start Tue Mar 31 2020 18:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 C 1.52996 * 109.47159 * 179.72352 * 5 3 2 7 7 H 1.09003 * 110.34387 * 54.29250 * 6 5 3 8 8 C 1.51109 * 110.38402 * 292.01036 * 6 5 3 9 9 C 1.30724 * 110.98895 * 224.83781 * 8 6 5 10 10 C 1.51102 * 111.13712 * 359.84401 * 9 8 6 11 11 C 1.54632 * 110.38838 * 176.58600 * 6 5 3 12 12 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 13 13 H 1.09007 * 110.27214 * 179.29919 * 12 2 1 14 14 C 1.54592 * 110.31315 * 57.20976 * 12 2 1 15 15 C 1.55103 * 102.84439 * 219.18509 * 14 12 2 16 16 N 1.48534 * 103.28639 * 37.30505 * 15 14 12 17 17 C 1.46900 * 110.99911 * 200.33393 * 16 15 14 18 18 C 1.50697 * 109.47277 * 307.39305 * 17 16 15 19 19 O 1.21295 * 120.00007 * 359.97438 * 18 17 16 20 20 N 1.34769 * 120.00119 * 180.02562 * 18 17 16 21 21 C 1.37104 * 120.00288 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99577 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00427 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99615 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00051 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47335 * 90.00567 * 25 23 21 27 27 H 1.48505 * 109.47008 * 210.00206 * 25 23 21 28 28 H 1.48500 * 109.47217 * 330.00178 * 25 23 21 29 29 C 1.47904 * 105.81564 * 320.84505 * 16 15 14 30 30 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 31 31 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 32 32 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 33 33 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 34 34 H 1.08994 * 109.46990 * 59.72065 * 5 3 2 35 35 H 1.07997 * 124.44990 * 44.73515 * 8 6 5 36 36 H 1.07997 * 124.41375 * 179.97438 * 9 8 6 37 37 H 1.09000 * 110.38838 * 257.72541 * 10 9 8 38 38 H 1.09005 * 110.38973 * 135.34700 * 10 9 8 39 39 H 1.08996 * 111.03579 * 261.47542 * 11 6 5 40 40 H 1.08995 * 111.03643 * 25.37146 * 11 6 5 41 41 H 1.09007 * 110.72489 * 337.47881 * 14 12 2 42 42 H 1.08994 * 110.72784 * 100.76445 * 14 12 2 43 43 H 1.08994 * 110.59419 * 278.86752 * 15 14 12 44 44 H 1.09004 * 110.83023 * 155.84538 * 15 14 12 45 45 H 1.09000 * 109.47105 * 67.39305 * 17 16 15 46 46 H 1.08999 * 109.46993 * 187.39242 * 17 16 15 47 47 H 0.97000 * 120.00303 * 359.97438 * 20 18 17 48 48 H 0.97003 * 120.00009 * 179.97438 * 24 23 21 49 49 H 1.08999 * 109.91707 * 265.97645 * 29 16 15 50 50 H 1.09002 * 109.91131 * 144.68399 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 6 2.3798 3.6351 0.0120 7 1 3.0794 3.5396 -0.8184 8 6 3.1254 3.6838 1.3254 9 6 3.1914 4.9072 1.7813 10 6 2.5046 5.8750 0.8460 11 6 1.6302 4.9853 -0.0677 12 6 2.1974 -1.2688 -0.0006 13 1 3.2718 -1.0847 -0.0130 14 6 1.7858 -2.1255 -1.2197 15 6 1.7387 -3.5604 -0.6327 16 7 1.1904 -3.3531 0.7321 17 6 1.5101 -4.4896 1.6062 18 6 1.0728 -5.7709 0.9444 19 8 0.5461 -5.7403 -0.1478 20 7 1.2660 -6.9507 1.5665 21 6 0.8677 -8.1164 0.9647 22 1 0.3994 -8.0892 -0.0082 23 6 1.0673 -9.3329 1.6058 24 7 1.6376 -9.3659 2.7893 25 14 0.5239 -10.9209 0.7861 26 1 1.6352 -11.4569 -0.0402 27 1 0.1571 -11.9148 1.8268 28 1 -0.6525 -10.6537 -0.0797 29 6 1.8133 -2.1082 1.2320 30 1 -0.3633 0.0002 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 0.7588 2.5344 -0.8833 34 1 0.7590 2.5257 0.8966 35 1 3.5459 2.8216 1.8215 36 1 3.6755 5.1892 2.7046 37 1 3.2411 6.4186 0.2543 38 1 1.8811 6.5696 1.4090 39 1 1.6177 5.3662 -1.0889 40 1 0.6179 4.8946 0.3262 41 1 0.8038 -1.8270 -1.5871 42 1 2.5324 -2.0550 -2.0106 43 1 2.7402 -3.9878 -0.5841 44 1 1.0778 -4.1980 -1.2200 45 1 2.5852 -4.5206 1.7831 46 1 0.9887 -4.3751 2.5564 47 1 1.6869 -6.9752 2.4401 48 1 1.7766 -10.2151 3.2371 49 1 2.7051 -2.3462 1.8118 50 1 1.1019 -1.5587 1.8484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269207963.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:44 Heat of formation + Delta-G solvation = -60.655624 kcal Electronic energy + Delta-G solvation = -28823.645097 eV Core-core repulsion = 24850.394232 eV Total energy + Delta-G solvation = -3973.250865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.50239 -40.57230 -39.51394 -38.65579 -36.33078 -35.78262 -33.40869 -33.00357 -31.93162 -29.81061 -29.62082 -28.43666 -27.59460 -26.44199 -25.64894 -22.52488 -22.17756 -21.27160 -21.06031 -20.10698 -19.87636 -19.44076 -18.30165 -17.69861 -17.44499 -16.98135 -16.67491 -16.42232 -16.33300 -16.20040 -15.83189 -15.57846 -15.35408 -14.78695 -14.38079 -14.24605 -14.04878 -13.60883 -13.53236 -13.37886 -13.28483 -13.02117 -12.97570 -12.83289 -12.73235 -12.66556 -12.63661 -12.60664 -12.41997 -12.27913 -12.12850 -12.04380 -11.97115 -11.73973 -11.66083 -11.46347 -10.70880 -10.22198 -10.01802 -9.76302 -9.62575 -9.38760 -8.47362 -5.96063 1.37413 1.39776 1.41562 1.54257 1.65642 1.99331 2.02878 2.28028 2.81676 3.19478 3.29763 3.48335 3.64841 3.74718 3.76220 3.95137 3.99931 4.09126 4.22927 4.27203 4.31492 4.36203 4.38228 4.45821 4.52409 4.55707 4.60271 4.64668 4.69697 4.74000 4.78613 4.79387 4.92671 5.00442 5.00834 5.07005 5.09651 5.13026 5.23269 5.31352 5.40825 5.45053 5.54947 5.71179 5.81298 5.89006 6.00637 6.06356 6.45397 6.59157 7.11821 7.20667 7.54219 8.09558 8.70031 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.038690 B = 0.001817 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.519286 B =15405.362774 C =15697.429899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.605 5.605 3 C 0.507 3.493 4 O -0.583 6.583 5 C -0.122 4.122 6 C -0.055 4.055 7 H 0.067 0.933 8 C -0.166 4.166 9 C -0.177 4.177 10 C -0.101 4.101 11 C -0.115 4.115 12 C 0.136 3.864 13 H 0.089 0.911 14 C -0.120 4.120 15 C 0.041 3.959 16 N -0.501 5.501 17 C 0.046 3.954 18 C 0.441 3.559 19 O -0.611 6.611 20 N -0.572 5.572 21 C -0.332 4.332 22 H 0.081 0.919 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.272 1.272 29 C 0.030 3.970 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.025 0.975 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.053 0.947 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.582 28.736 -2.102 28.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.337 5.337 3 C 0.298 3.702 4 O -0.464 6.464 5 C -0.161 4.161 6 C -0.074 4.074 7 H 0.086 0.914 8 C -0.184 4.184 9 C -0.194 4.194 10 C -0.138 4.138 11 C -0.152 4.152 12 C 0.031 3.969 13 H 0.107 0.893 14 C -0.159 4.159 15 C -0.087 4.087 16 N -0.225 5.225 17 C -0.085 4.085 18 C 0.228 3.772 19 O -0.497 6.497 20 N -0.210 5.210 21 C -0.461 4.461 22 H 0.099 0.901 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.196 1.196 29 C -0.099 4.099 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.044 0.956 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.129 0.871 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.071 0.929 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.851 28.635 -2.694 28.821 hybrid contribution 1.346 -1.645 0.434 2.170 sum -0.504 26.990 -2.260 27.089 Atomic orbital electron populations 1.22029 0.77307 1.04703 1.03214 1.48011 1.08246 1.04699 1.72732 1.21425 0.87834 0.86424 0.74523 1.90673 1.16031 1.87934 1.51723 1.21795 0.98816 0.89204 1.06282 1.20830 0.95795 0.94703 0.96072 0.91449 1.23323 1.00502 0.97504 0.97121 1.23574 1.00845 0.95195 0.99827 1.21398 0.98446 0.97524 0.96410 1.22566 0.99188 0.92642 1.00813 1.21735 0.97115 0.83495 0.94520 0.89306 1.22843 1.02901 0.93168 0.97015 1.23300 0.97619 0.97034 0.90772 1.64623 1.54533 1.01293 1.02084 1.22011 1.00185 0.88751 0.97568 1.20624 0.83958 0.85564 0.87054 1.90431 1.49041 1.87212 1.23061 1.41925 1.54135 1.05077 1.19814 1.19676 1.38314 0.84526 1.03623 0.90076 1.26053 0.96730 1.02194 0.96374 1.69678 1.43261 1.28564 1.14674 0.84913 0.78584 0.76915 0.77837 1.19754 1.19616 1.19647 1.23300 0.98681 0.90913 0.97000 0.91365 0.90714 0.88224 0.86224 0.86771 0.88145 0.85556 0.90576 0.89824 0.89664 0.89267 0.89477 0.90356 0.95622 0.89495 0.91716 0.87116 0.77096 0.91332 0.92916 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 8.89 127.77 1.14 2.07 16 2 N -0.60 -11.91 2.78 -817.67 -2.27 -14.19 16 3 C 0.51 10.72 7.45 87.66 0.65 11.38 16 4 O -0.58 -17.28 14.15 -3.04 -0.04 -17.33 16 5 C -0.12 -1.55 3.65 29.85 0.11 -1.44 16 6 C -0.06 -0.85 2.52 -10.86 -0.03 -0.87 16 7 H 0.07 1.31 7.96 -2.39 -0.02 1.29 16 8 C -0.17 -3.11 9.24 26.06 0.24 -2.87 16 9 C -0.18 -2.66 10.78 26.06 0.28 -2.38 16 10 C -0.10 -1.08 6.81 30.53 0.21 -0.88 16 11 C -0.11 -1.09 6.71 31.71 0.21 -0.87 16 12 C 0.14 3.33 3.39 45.87 0.16 3.49 16 13 H 0.09 2.49 6.96 -2.38 -0.02 2.47 16 14 C -0.12 -3.10 6.66 31.86 0.21 -2.88 16 15 C 0.04 1.37 5.31 86.71 0.46 1.83 16 16 N -0.50 -16.07 5.26 -887.23 -4.67 -20.74 16 17 C 0.05 1.62 5.52 85.56 0.47 2.10 16 18 C 0.44 20.78 7.49 87.66 0.66 21.44 16 19 O -0.61 -32.65 13.09 -3.07 -0.04 -32.69 16 20 N -0.57 -29.33 5.29 -306.99 -1.62 -30.96 16 21 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.92 -49.78 13.05 21.66 0.28 -49.49 16 25 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 C 0.03 0.75 5.85 86.44 0.51 1.26 16 30 H 0.07 0.81 7.88 -2.39 -0.02 0.79 16 31 H 0.07 1.25 6.87 -2.39 -0.02 1.23 16 32 H 0.10 0.76 6.43 -2.39 -0.02 0.74 16 33 H 0.12 0.94 8.11 -2.38 -0.02 0.92 16 34 H 0.11 1.04 7.39 -2.39 -0.02 1.03 16 35 H 0.10 2.33 7.44 -2.91 -0.02 2.31 16 36 H 0.13 1.67 8.06 -2.91 -0.02 1.64 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.09 0.58 7.91 -2.39 -0.02 0.57 16 41 H 0.09 2.09 6.91 -2.38 -0.02 2.08 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.03 0.90 8.02 -2.39 -0.02 0.88 16 44 H 0.09 3.56 5.96 -2.39 -0.01 3.55 16 45 H 0.06 2.10 7.81 -2.39 -0.02 2.08 16 46 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 47 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 48 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 49 H 0.05 1.32 7.57 -2.39 -0.02 1.30 16 50 H 0.10 2.18 7.01 -2.39 -0.02 2.17 16 Total: -1.00 -70.74 392.33 0.43 -70.31 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: 0.21 Total: 37.04 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 6.56 Total: 13.16 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -8.28 Total: -115.38 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.08 Total: -50.01 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -70.74 0.43 -70.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269207963.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.659 kcal (2) G-P(sol) polarization free energy of solvation -70.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds