Wall clock time and date at job start Tue Mar 31 2020 18:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34785 * 120.00041 * 2 1 4 4 O 1.21276 * 120.00051 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.99895 * 359.97438 * 3 2 1 6 6 C 1.53891 * 113.58888 * 279.22225 * 5 3 2 7 7 C 1.53421 * 86.82260 * 220.45589 * 6 5 3 8 8 C 1.52463 * 128.60815 * 165.09760 * 7 6 5 9 9 C 1.52462 * 128.51954 * 245.01131 * 7 6 5 10 10 C 1.53249 * 87.72159 * 25.01511 * 7 6 5 11 11 C 1.46500 * 120.00292 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.76572 * 176.79672 * 11 2 1 13 13 C 1.55144 * 110.70026 * 53.60052 * 11 2 1 14 14 C 1.54905 * 101.65283 * 205.96394 * 13 11 2 15 15 N 1.47853 * 104.79691 * 37.06927 * 14 13 11 16 16 C 1.46893 * 110.99989 * 213.63969 * 15 14 13 17 17 C 1.50706 * 109.47176 * 290.83869 * 16 15 14 18 18 O 1.21295 * 119.99584 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00020 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99737 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00254 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99943 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00099 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00243 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46883 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47233 * 120.00270 * 24 22 20 27 27 H 1.48501 * 109.47364 * 240.00343 * 24 22 20 28 28 C 1.47445 * 108.56443 * 335.90735 * 15 14 13 29 29 H 1.09000 * 109.46743 * 270.00281 * 1 2 3 30 30 H 1.09001 * 109.47070 * 29.99800 * 1 2 3 31 31 H 1.08995 * 109.47147 * 150.00443 * 1 2 3 32 32 H 1.09006 * 112.83080 * 50.32926 * 5 3 2 33 33 H 1.09002 * 113.64113 * 334.92058 * 6 5 3 34 34 H 1.08994 * 113.64982 * 105.92598 * 6 5 3 35 35 H 1.08997 * 117.51394 * 224.95458 * 8 7 6 36 36 H 1.08998 * 117.50922 * 10.05718 * 8 7 6 37 37 H 1.09003 * 117.51295 * 349.80163 * 9 7 6 38 38 H 1.08997 * 117.51550 * 134.90579 * 9 7 6 39 39 H 1.09008 * 113.64653 * 220.48943 * 10 7 6 40 40 H 1.08998 * 113.65157 * 89.48473 * 10 7 6 41 41 H 1.09003 * 110.99221 * 324.05241 * 13 11 2 42 42 H 1.09003 * 110.99295 * 87.83370 * 13 11 2 43 43 H 1.09004 * 110.37635 * 278.24283 * 14 13 11 44 44 H 1.09001 * 110.37453 * 155.89787 * 14 13 11 45 45 H 1.09001 * 109.46739 * 170.84278 * 16 15 14 46 46 H 1.09000 * 109.47767 * 50.84537 * 16 15 14 47 47 H 0.96994 * 119.99756 * 0.02562 * 19 17 16 48 48 H 0.96999 * 120.00288 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.88883 * 120.39460 * 28 15 14 50 50 H 1.09002 * 109.88592 * 241.58584 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 0.8823 2.8923 -1.3930 7 6 1.2903 4.3222 -1.0151 8 6 1.4627 5.5340 -1.9241 9 6 0.3993 5.5443 -0.8224 10 6 2.2984 3.7105 -0.0363 11 6 2.1976 -1.2687 0.0006 12 1 3.2720 -1.0945 -0.0565 13 6 1.7260 -2.1748 -1.1672 14 6 2.0537 -3.5864 -0.6199 15 7 1.7524 -3.5103 0.8256 16 6 2.6707 -4.3557 1.6000 17 6 2.3775 -5.8066 1.3167 18 8 1.4909 -6.1067 0.5452 19 7 3.1002 -6.7706 1.9206 20 6 2.8338 -8.0904 1.6625 21 1 2.0450 -8.3576 0.9749 22 6 3.5793 -9.0842 2.2847 23 7 4.5394 -8.7591 3.1210 24 14 3.2158 -10.8826 1.9336 25 1 2.0952 -10.9809 0.9641 26 1 4.4237 -11.5290 1.3605 27 1 2.8399 -11.5674 3.1965 28 6 1.8453 -2.1016 1.2510 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5137 32 1 0.6182 2.5181 0.7724 33 1 1.4656 2.4736 -2.2131 34 1 -0.1917 2.7641 -1.5268 35 1 2.3475 6.1530 -1.7756 36 1 1.1193 5.4433 -2.9546 37 1 -0.6435 5.4604 -1.1284 38 1 0.5847 6.1701 0.0505 39 1 2.3580 4.2374 0.9162 40 1 3.2765 3.5200 -0.4781 41 1 0.6558 -2.0622 -1.3411 42 1 2.2912 -1.9667 -2.0757 43 1 3.1072 -3.8189 -0.7761 44 1 1.4237 -4.3352 -1.0999 45 1 2.5362 -4.1588 2.6636 46 1 3.6987 -4.1306 1.3161 47 1 3.8089 -6.5305 2.5379 48 1 5.0596 -9.4529 3.5557 49 1 0.8889 -1.7733 1.6579 50 1 2.6277 -1.9919 2.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269275975.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:23 Heat of formation + Delta-G solvation = -4.461071 kcal Electronic energy + Delta-G solvation = -28800.620447 eV Core-core repulsion = 24829.806361 eV Total energy + Delta-G solvation = -3970.814086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.98784 -39.54153 -38.48028 -37.45309 -35.32562 -34.03612 -33.80328 -31.44569 -30.95718 -28.75725 -27.23833 -26.69008 -26.19082 -24.87945 -24.00474 -22.87592 -21.11767 -20.83996 -19.20635 -19.12788 -18.76610 -17.88077 -17.59229 -16.71530 -16.03043 -15.87921 -15.58970 -15.47968 -15.08659 -14.76788 -14.45074 -14.35288 -13.83899 -13.64973 -13.34407 -13.19946 -12.93186 -12.88986 -12.69944 -12.49276 -12.33237 -12.28618 -11.92613 -11.91727 -11.86334 -11.56437 -11.48429 -11.40425 -11.11717 -10.95610 -10.77266 -10.72171 -10.60414 -10.32662 -10.20240 -10.13598 -9.78588 -9.48295 -8.86676 -8.43153 -7.94724 -7.85025 -6.39179 -3.79896 2.37289 2.71236 3.17853 3.28145 3.31518 3.35330 3.89910 3.93908 4.04198 4.09411 4.22209 4.27201 4.33733 4.41977 4.56692 4.62848 4.80685 4.87669 4.90960 4.98375 5.14109 5.19755 5.21473 5.25108 5.28190 5.31019 5.33541 5.37856 5.39908 5.43036 5.51967 5.59487 5.65288 5.70449 5.79862 5.81394 5.84156 5.91310 5.93949 5.96128 6.10840 6.31155 6.36742 6.45306 7.16100 7.22965 7.26752 7.57631 7.96819 8.09110 8.64795 9.20942 9.57637 10.09568 10.78756 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.042836 B = 0.001799 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.497938 B =15563.246212 C =15815.464029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.602 5.602 3 C 0.524 3.476 4 O -0.540 6.540 5 C -0.130 4.130 6 C -0.081 4.081 7 C -0.164 4.164 8 C -0.165 4.165 9 C -0.151 4.151 10 C -0.076 4.076 11 C 0.118 3.882 12 H 0.106 0.894 13 C -0.140 4.140 14 C 0.054 3.946 15 N -0.501 5.501 16 C 0.039 3.961 17 C 0.446 3.554 18 O -0.578 6.578 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.033 3.967 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.050 0.950 47 H 0.392 0.608 48 H 0.270 0.730 49 H 0.080 0.920 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 27.388 -6.592 29.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.335 5.335 3 C 0.312 3.688 4 O -0.417 6.417 5 C -0.151 4.151 6 C -0.118 4.118 7 C -0.165 4.165 8 C -0.202 4.202 9 C -0.187 4.187 10 C -0.113 4.113 11 C 0.013 3.987 12 H 0.124 0.876 13 C -0.179 4.179 14 C -0.073 4.073 15 N -0.226 5.226 16 C -0.092 4.092 17 C 0.231 3.769 18 O -0.461 6.461 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.096 4.096 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.068 0.932 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.098 0.902 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.600 26.847 -6.902 28.743 hybrid contribution 1.076 -0.580 0.331 1.266 sum -6.524 26.267 -6.570 27.851 Atomic orbital electron populations 1.21879 0.79316 1.03609 1.02307 1.47769 1.07106 1.05471 1.73124 1.20538 0.87843 0.85042 0.75390 1.90686 1.14024 1.87236 1.49782 1.22616 1.00083 0.92134 1.00252 1.22447 1.01221 0.92904 0.95253 1.22185 1.02144 0.89776 1.02348 1.22804 1.01012 1.00464 0.95920 1.22796 0.96268 0.98802 1.00871 1.22381 0.97401 0.92994 0.98559 1.22409 0.97922 0.82565 0.95794 0.87591 1.23134 1.02284 0.94967 0.97507 1.22996 1.00214 0.96138 0.87979 1.63293 1.50824 1.04923 1.03518 1.22139 0.94271 0.93866 0.98956 1.19716 0.85551 0.86143 0.85503 1.90501 1.33748 1.82958 1.38920 1.41867 1.32193 1.05682 1.40589 1.19743 1.17250 0.80800 1.24891 0.87879 1.25258 0.95915 1.00523 0.96338 1.69622 1.21342 1.34358 1.29073 0.85806 0.78356 0.81964 0.78238 1.19243 1.20819 1.20779 1.23183 1.01753 0.88244 0.96406 0.92261 0.90890 0.90065 0.86780 0.89243 0.90490 0.88597 0.88651 0.88536 0.88523 0.90907 0.88285 0.90080 0.90692 0.93715 0.88428 0.89388 0.93223 0.77527 0.91970 0.90171 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 9.08 59.85 0.54 1.06 16 2 N -0.60 -6.20 2.88 -171.85 -0.49 -6.69 16 3 C 0.52 5.89 7.20 -10.98 -0.08 5.81 16 4 O -0.54 -8.18 15.28 5.56 0.08 -8.10 16 5 C -0.13 -1.02 2.80 -90.85 -0.25 -1.27 16 6 C -0.08 -0.54 6.86 -26.05 -0.18 -0.71 16 7 C -0.16 -1.10 3.09 -154.71 -0.48 -1.58 16 8 C -0.17 -0.98 10.53 -26.94 -0.28 -1.26 16 9 C -0.15 -0.81 10.53 -26.94 -0.28 -1.09 16 10 C -0.08 -0.62 7.42 -26.14 -0.19 -0.81 16 11 C 0.12 1.44 3.35 -66.11 -0.22 1.22 16 12 H 0.11 1.49 7.01 -51.93 -0.36 1.13 16 13 C -0.14 -1.69 6.60 -24.59 -0.16 -1.86 16 14 C 0.05 0.86 5.74 -2.29 -0.01 0.85 16 15 N -0.50 -8.37 4.86 -232.68 -1.13 -9.50 16 16 C 0.04 0.72 5.05 -4.98 -0.03 0.69 16 17 C 0.45 10.62 7.58 -10.98 -0.08 10.53 16 18 O -0.58 -15.58 14.61 5.54 0.08 -15.50 16 19 N -0.57 -14.52 5.29 -10.96 -0.06 -14.57 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 24 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 C 0.03 0.44 6.50 -2.84 -0.02 0.43 16 29 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 30 H 0.07 0.38 5.66 -51.93 -0.29 0.09 16 31 H 0.08 0.61 5.99 -51.93 -0.31 0.30 16 32 H 0.11 0.72 7.91 -51.93 -0.41 0.31 16 33 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 34 H 0.08 0.39 7.62 -51.93 -0.40 -0.01 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.10 0.98 7.44 -51.93 -0.39 0.59 16 41 H 0.08 0.90 6.01 -51.93 -0.31 0.59 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.04 0.73 7.62 -51.93 -0.40 0.33 16 44 H 0.10 1.77 7.38 -51.93 -0.38 1.39 16 45 H 0.09 1.47 8.03 -51.93 -0.42 1.05 16 46 H 0.05 0.84 7.85 -51.93 -0.41 0.44 16 47 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.08 1.00 7.01 -51.93 -0.36 0.64 16 50 H 0.06 0.77 7.55 -51.93 -0.39 0.38 16 LS Contribution 395.65 15.07 5.96 5.96 Total: -1.00 -33.10 395.65 -9.86 -42.96 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -8.03 Total: 9.36 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.97 Total: 3.98 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.96 Total: -54.85 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.17 Total: -23.60 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.10 -9.86 -42.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269275975.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.499 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds