Wall clock time and date at job start Tue Mar 31 2020 18:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34785 * 120.00041 * 2 1 4 4 O 1.21276 * 120.00051 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.99895 * 359.97438 * 3 2 1 6 6 C 1.53891 * 113.58888 * 279.22225 * 5 3 2 7 7 C 1.53421 * 86.82260 * 220.45589 * 6 5 3 8 8 C 1.52463 * 128.60815 * 165.09760 * 7 6 5 9 9 C 1.52462 * 128.51954 * 245.01131 * 7 6 5 10 10 C 1.53249 * 87.72159 * 25.01511 * 7 6 5 11 11 C 1.46500 * 120.00292 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.76572 * 176.79672 * 11 2 1 13 13 C 1.55144 * 110.70026 * 53.60052 * 11 2 1 14 14 C 1.54905 * 101.65283 * 205.96394 * 13 11 2 15 15 N 1.47853 * 104.79691 * 37.06927 * 14 13 11 16 16 C 1.46893 * 110.99989 * 213.63969 * 15 14 13 17 17 C 1.50706 * 109.47176 * 290.83869 * 16 15 14 18 18 O 1.21295 * 119.99584 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00020 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99737 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00254 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99943 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00099 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00243 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46883 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47233 * 120.00270 * 24 22 20 27 27 H 1.48501 * 109.47364 * 240.00343 * 24 22 20 28 28 C 1.47445 * 108.56443 * 335.90735 * 15 14 13 29 29 H 1.09000 * 109.46743 * 270.00281 * 1 2 3 30 30 H 1.09001 * 109.47070 * 29.99800 * 1 2 3 31 31 H 1.08995 * 109.47147 * 150.00443 * 1 2 3 32 32 H 1.09006 * 112.83080 * 50.32926 * 5 3 2 33 33 H 1.09002 * 113.64113 * 334.92058 * 6 5 3 34 34 H 1.08994 * 113.64982 * 105.92598 * 6 5 3 35 35 H 1.08997 * 117.51394 * 224.95458 * 8 7 6 36 36 H 1.08998 * 117.50922 * 10.05718 * 8 7 6 37 37 H 1.09003 * 117.51295 * 349.80163 * 9 7 6 38 38 H 1.08997 * 117.51550 * 134.90579 * 9 7 6 39 39 H 1.09008 * 113.64653 * 220.48943 * 10 7 6 40 40 H 1.08998 * 113.65157 * 89.48473 * 10 7 6 41 41 H 1.09003 * 110.99221 * 324.05241 * 13 11 2 42 42 H 1.09003 * 110.99295 * 87.83370 * 13 11 2 43 43 H 1.09004 * 110.37635 * 278.24283 * 14 13 11 44 44 H 1.09001 * 110.37453 * 155.89787 * 14 13 11 45 45 H 1.09001 * 109.46739 * 170.84278 * 16 15 14 46 46 H 1.09000 * 109.47767 * 50.84537 * 16 15 14 47 47 H 0.96994 * 119.99756 * 0.02562 * 19 17 16 48 48 H 0.96999 * 120.00288 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.88883 * 120.39460 * 28 15 14 50 50 H 1.09002 * 109.88592 * 241.58584 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 0.8823 2.8923 -1.3930 7 6 1.2903 4.3222 -1.0151 8 6 1.4627 5.5340 -1.9241 9 6 0.3993 5.5443 -0.8224 10 6 2.2984 3.7105 -0.0363 11 6 2.1976 -1.2687 0.0006 12 1 3.2720 -1.0945 -0.0565 13 6 1.7260 -2.1748 -1.1672 14 6 2.0537 -3.5864 -0.6199 15 7 1.7524 -3.5103 0.8256 16 6 2.6707 -4.3557 1.6000 17 6 2.3775 -5.8066 1.3167 18 8 1.4909 -6.1067 0.5452 19 7 3.1002 -6.7706 1.9206 20 6 2.8338 -8.0904 1.6625 21 1 2.0450 -8.3576 0.9749 22 6 3.5793 -9.0842 2.2847 23 7 4.5394 -8.7591 3.1210 24 14 3.2158 -10.8826 1.9336 25 1 2.0952 -10.9809 0.9641 26 1 4.4237 -11.5290 1.3605 27 1 2.8399 -11.5674 3.1965 28 6 1.8453 -2.1016 1.2510 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5137 32 1 0.6182 2.5181 0.7724 33 1 1.4656 2.4736 -2.2131 34 1 -0.1917 2.7641 -1.5268 35 1 2.3475 6.1530 -1.7756 36 1 1.1193 5.4433 -2.9546 37 1 -0.6435 5.4604 -1.1284 38 1 0.5847 6.1701 0.0505 39 1 2.3580 4.2374 0.9162 40 1 3.2765 3.5200 -0.4781 41 1 0.6558 -2.0622 -1.3411 42 1 2.2912 -1.9667 -2.0757 43 1 3.1072 -3.8189 -0.7761 44 1 1.4237 -4.3352 -1.0999 45 1 2.5362 -4.1588 2.6636 46 1 3.6987 -4.1306 1.3161 47 1 3.8089 -6.5305 2.5379 48 1 5.0596 -9.4529 3.5557 49 1 0.8889 -1.7733 1.6579 50 1 2.6277 -1.9919 2.0020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269275975.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:22 Heat of formation + Delta-G solvation = -26.538860 kcal Electronic energy + Delta-G solvation = -28801.577811 eV Core-core repulsion = 24829.806361 eV Total energy + Delta-G solvation = -3971.771451 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.77523 -40.68438 -39.72883 -38.78640 -36.39561 -35.83130 -34.55498 -33.31817 -32.36847 -29.85246 -28.44465 -27.73893 -26.75707 -26.27776 -25.26082 -23.28913 -22.40547 -21.79437 -21.01277 -19.98566 -19.87636 -19.30354 -18.49392 -17.79891 -17.46703 -16.92914 -16.56455 -16.40302 -16.10223 -16.07006 -15.77726 -15.59402 -15.53803 -14.79809 -14.54157 -14.33864 -14.00900 -13.86980 -13.61848 -13.47732 -13.41261 -13.27381 -13.03744 -12.99909 -12.91631 -12.71294 -12.52851 -12.43925 -12.39664 -12.30146 -12.24493 -12.11215 -11.72979 -11.49163 -11.30345 -11.24559 -10.73335 -10.49139 -10.31688 -10.00865 -9.76496 -9.22323 -8.46469 -5.95270 1.36545 1.41498 1.53245 1.55978 1.88908 2.05141 2.28664 2.78145 2.85542 3.19837 3.33569 3.39213 3.45514 3.60773 3.62452 3.67245 3.82983 3.92814 3.98153 4.13624 4.17646 4.26020 4.29480 4.36031 4.40011 4.41966 4.48713 4.61488 4.66106 4.75598 4.78746 4.82012 4.82658 4.84377 4.91740 4.95964 5.02335 5.03768 5.08821 5.14407 5.25593 5.31571 5.32509 5.41169 5.52528 5.82731 5.96849 6.07378 6.37766 6.60457 7.12422 7.13014 7.56204 8.11760 8.71299 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.042836 B = 0.001799 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.497938 B =15563.246212 C =15815.464029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.599 5.599 3 C 0.519 3.481 4 O -0.588 6.588 5 C -0.122 4.122 6 C -0.074 4.074 7 C -0.173 4.173 8 C -0.172 4.172 9 C -0.137 4.137 10 C -0.083 4.083 11 C 0.125 3.875 12 H 0.086 0.914 13 C -0.124 4.124 14 C 0.054 3.946 15 N -0.517 5.517 16 C 0.051 3.949 17 C 0.444 3.556 18 O -0.613 6.613 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.271 1.271 28 C 0.039 3.961 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.139 0.861 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.064 0.936 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.095 0.905 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.885 28.851 -6.405 30.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.330 5.330 3 C 0.309 3.691 4 O -0.468 6.468 5 C -0.143 4.143 6 C -0.111 4.111 7 C -0.173 4.173 8 C -0.209 4.209 9 C -0.173 4.173 10 C -0.121 4.121 11 C 0.019 3.981 12 H 0.104 0.896 13 C -0.163 4.163 14 C -0.074 4.074 15 N -0.241 5.241 16 C -0.081 4.081 17 C 0.231 3.769 18 O -0.498 6.498 19 N -0.214 5.214 20 C -0.461 4.461 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.196 1.196 28 C -0.090 4.090 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.157 0.843 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.052 0.948 44 H 0.087 0.913 45 H 0.126 0.874 46 H 0.082 0.918 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.113 0.887 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.237 28.336 -6.703 30.548 hybrid contribution 1.582 -0.982 0.266 1.881 sum -7.655 27.355 -6.437 29.126 Atomic orbital electron populations 1.22134 0.77048 1.04872 1.03539 1.47830 1.08371 1.04379 1.72392 1.21190 0.87473 0.86177 0.74267 1.90668 1.16254 1.87911 1.51983 1.22690 1.00056 0.89653 1.01878 1.22403 1.02375 0.92489 0.93836 1.22148 1.02371 0.90283 1.02464 1.22891 1.01529 1.00015 0.96501 1.22895 0.96651 0.97234 1.00537 1.22341 0.96759 0.93859 0.99161 1.22124 0.97195 0.83529 0.95240 0.89619 1.23024 1.03390 0.92258 0.97581 1.22891 0.98925 0.97724 0.87897 1.63237 1.50526 1.06661 1.03697 1.22003 0.95395 0.90243 1.00418 1.20677 0.84200 0.88101 0.83953 1.90474 1.35095 1.84096 1.40151 1.41940 1.32761 1.05482 1.41186 1.19708 1.17895 0.82510 1.25950 0.90197 1.26058 0.95344 1.04335 0.95685 1.69686 1.21593 1.35850 1.29209 0.84851 0.78240 0.76827 0.78284 1.19699 1.19704 1.19597 1.23188 1.02655 0.86271 0.96853 0.91022 0.88342 0.90132 0.84346 0.90621 0.88039 0.88828 0.88071 0.87094 0.87986 0.90450 0.90916 0.88515 0.89787 0.94764 0.91260 0.87358 0.91773 0.77147 0.91360 0.88704 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 9.08 127.77 1.16 1.90 16 2 N -0.60 -11.22 2.88 -816.00 -2.35 -13.57 16 3 C 0.52 11.13 7.20 87.66 0.63 11.77 16 4 O -0.59 -18.11 15.28 -3.02 -0.05 -18.15 16 5 C -0.12 -1.66 2.80 -10.94 -0.03 -1.69 16 6 C -0.07 -0.80 6.86 31.04 0.21 -0.58 16 7 C -0.17 -1.98 3.09 -52.31 -0.16 -2.14 16 8 C -0.17 -1.76 10.53 30.46 0.32 -1.44 16 9 C -0.14 -1.08 10.53 30.46 0.32 -0.76 16 10 C -0.08 -1.29 7.42 30.98 0.23 -1.06 16 11 C 0.12 2.94 3.35 46.17 0.15 3.10 16 12 H 0.09 2.42 7.01 -2.39 -0.02 2.41 16 13 C -0.12 -2.88 6.60 31.98 0.21 -2.67 16 14 C 0.05 1.71 5.74 86.77 0.50 2.21 16 15 N -0.52 -17.00 4.86 -890.07 -4.33 -21.33 16 16 C 0.05 1.85 5.05 85.56 0.43 2.28 16 17 C 0.44 21.58 7.58 87.66 0.66 22.24 16 18 O -0.61 -34.07 14.61 -3.08 -0.04 -34.12 16 19 N -0.58 -30.21 5.29 -306.98 -1.62 -31.84 16 20 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 21 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 22 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 23 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16 24 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 C 0.04 0.98 6.50 86.65 0.56 1.54 16 29 H 0.07 0.68 7.90 -2.39 -0.02 0.66 16 30 H 0.10 0.63 5.66 -2.39 -0.01 0.61 16 31 H 0.08 0.97 5.99 -2.39 -0.01 0.95 16 32 H 0.14 1.24 7.91 -2.38 -0.02 1.22 16 33 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 34 H 0.10 0.61 7.62 -2.39 -0.02 0.59 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.07 1.51 7.44 -2.39 -0.02 1.49 16 41 H 0.10 1.96 6.01 -2.39 -0.01 1.95 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.03 1.14 7.62 -2.38 -0.02 1.13 16 44 H 0.07 2.61 7.38 -2.39 -0.02 2.59 16 45 H 0.11 3.49 8.03 -2.39 -0.02 3.47 16 46 H 0.06 2.16 7.85 -2.39 -0.02 2.14 16 47 H 0.39 19.80 7.90 -92.71 -0.73 19.06 16 48 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 49 H 0.09 2.14 7.01 -2.39 -0.02 2.12 16 50 H 0.06 1.52 7.55 -2.39 -0.02 1.50 16 Total: -1.00 -73.73 395.65 0.63 -73.10 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.22 Total: 34.62 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 6.49 Total: 16.10 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -8.02 Total: -117.02 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -0.09 Total: -52.27 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -73.73 0.63 -73.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269275975.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.565 kcal (2) G-P(sol) polarization free energy of solvation -73.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds