Wall clock time and date at job start Tue Mar 31 2020 18:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99432 * 2 1 4 4 O 1.21281 * 119.99710 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.00548 * 0.02562 * 3 2 1 6 6 C 1.53895 * 113.58776 * 277.66659 * 5 3 2 7 7 C 1.53259 * 86.88276 * 220.42669 * 6 5 3 8 8 C 1.52454 * 128.58837 * 165.11053 * 7 6 5 9 9 C 1.52459 * 128.58137 * 245.05781 * 7 6 5 10 10 C 1.53258 * 87.69168 * 25.07895 * 7 6 5 11 11 C 1.46495 * 120.00017 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.28528 * 180.70127 * 11 2 1 13 13 C 1.54262 * 110.32442 * 302.82245 * 11 2 1 14 14 C 1.54389 * 105.05852 * 118.99997 * 13 11 2 15 15 N 1.48565 * 104.58934 * 23.85513 * 14 13 11 16 16 C 1.46904 * 110.99450 * 200.96181 * 15 14 13 17 17 C 1.50703 * 109.46986 * 176.49480 * 16 15 14 18 18 O 1.21287 * 119.99865 * 6.05954 * 17 16 15 19 19 N 1.34773 * 119.99986 * 186.05593 * 17 16 15 20 20 C 1.37092 * 120.00186 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99675 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00244 * 179.97438 * 20 19 17 23 23 N 1.31407 * 119.99743 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99789 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47119 * 89.99765 * 24 22 20 26 26 H 1.48493 * 109.47009 * 209.99563 * 24 22 20 27 27 H 1.48498 * 109.47466 * 329.99800 * 24 22 20 28 28 C 1.48555 * 104.22430 * 320.51536 * 15 14 13 29 29 H 1.09005 * 109.47070 * 269.99627 * 1 2 3 30 30 H 1.08997 * 109.47216 * 29.99622 * 1 2 3 31 31 H 1.08998 * 109.47057 * 150.00137 * 1 2 3 32 32 H 1.09001 * 112.83010 * 48.88247 * 5 3 2 33 33 H 1.08998 * 113.64637 * 334.91883 * 6 5 3 34 34 H 1.08993 * 113.64522 * 105.93059 * 6 5 3 35 35 H 1.08996 * 117.52032 * 225.04748 * 8 7 6 36 36 H 1.09009 * 117.51029 * 10.15115 * 8 7 6 37 37 H 1.08994 * 117.51542 * 349.84538 * 9 7 6 38 38 H 1.09005 * 117.51161 * 134.90930 * 9 7 6 39 39 H 1.09003 * 113.64399 * 220.41580 * 10 7 6 40 40 H 1.09003 * 113.72446 * 89.43272 * 10 7 6 41 41 H 1.08998 * 110.32388 * 237.89613 * 13 11 2 42 42 H 1.09000 * 110.32331 * 0.10636 * 13 11 2 43 43 H 1.08999 * 110.40780 * 142.63132 * 14 13 11 44 44 H 1.08993 * 110.41105 * 265.08072 * 14 13 11 45 45 H 1.09003 * 109.47034 * 296.48930 * 16 15 14 46 46 H 1.08993 * 109.47290 * 56.49041 * 16 15 14 47 47 H 0.97001 * 119.99921 * 359.97438 * 19 17 16 48 48 H 0.97004 * 119.99919 * 180.02562 * 23 22 20 49 49 H 1.09004 * 110.41370 * 280.70528 * 28 15 14 50 50 H 1.09000 * 110.41196 * 158.26401 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 0.9139 2.9119 -1.3969 7 6 1.3114 4.3354 -0.9914 8 6 1.5028 5.5589 -1.8806 9 6 0.4162 5.5549 -0.8017 10 6 2.2987 3.7108 0.0005 11 6 2.1975 -1.2687 -0.0006 12 1 3.2718 -1.0848 0.0120 13 6 1.7863 -2.1253 1.2147 14 6 1.1872 -3.4145 0.6124 15 7 1.7941 -3.5129 -0.7400 16 6 0.9871 -4.3708 -1.6179 17 6 1.5849 -4.3777 -3.0013 18 8 2.6433 -3.8224 -3.2073 19 7 0.9435 -5.0011 -4.0094 20 6 1.4871 -5.0069 -5.2680 21 1 2.4295 -4.5123 -5.4515 22 6 0.8260 -5.6500 -6.3073 23 7 1.3474 -5.6560 -7.5136 24 14 -0.8036 -6.5060 -5.9898 25 1 -1.9168 -5.5472 -6.2059 26 1 -0.9502 -7.6528 -6.9217 27 1 -0.8395 -6.9986 -4.5893 28 6 1.8123 -2.1122 -1.2347 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.6020 2.5081 0.7577 33 1 1.5157 2.5047 -2.2094 34 1 -0.1568 2.7857 -1.5568 35 1 2.3841 6.1759 -1.7054 36 1 1.1812 5.4818 -2.9193 37 1 -0.6198 5.4751 -1.1306 38 1 0.5826 6.1688 0.0836 39 1 2.3380 4.2252 0.9607 40 1 3.2864 3.5256 -0.4217 41 1 2.6588 -2.3619 1.8237 42 1 1.0382 -1.6026 1.8106 43 1 1.4619 -4.2794 1.2163 44 1 0.1031 -3.3308 0.5374 45 1 0.9751 -5.3864 -1.2223 46 1 -0.0319 -3.9869 -1.6643 47 1 0.0973 -5.4456 -3.8446 48 1 0.8857 -6.1047 -8.2392 49 1 0.8260 -1.8248 -1.5989 50 1 2.5576 -1.9967 -2.0218 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269275976.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:26 Heat of formation + Delta-G solvation = 3.499519 kcal Electronic energy + Delta-G solvation = -29399.089907 eV Core-core repulsion = 25428.621018 eV Total energy + Delta-G solvation = -3970.468889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.90861 -39.57619 -38.52570 -37.53566 -35.24048 -34.00514 -33.85143 -31.76448 -31.28912 -28.73043 -27.24778 -26.75712 -26.07599 -24.86120 -23.89362 -22.76807 -21.20934 -20.79083 -19.36013 -19.02286 -18.64805 -18.27932 -17.52133 -16.61899 -16.09459 -15.83150 -15.54182 -15.37809 -15.05964 -15.01510 -14.80384 -14.23380 -13.82492 -13.77902 -13.26784 -13.02932 -12.94214 -12.77806 -12.63537 -12.45708 -12.39563 -12.31854 -12.20451 -11.85439 -11.82011 -11.80138 -11.57800 -11.36514 -11.32831 -11.02343 -10.74431 -10.61292 -10.60674 -10.58896 -10.01645 -9.98731 -9.66173 -9.56536 -8.76214 -8.59736 -8.22217 -8.12468 -6.32163 -3.83615 2.48873 2.79420 3.00686 3.04305 3.13192 3.42246 3.71798 4.01602 4.03376 4.09136 4.18604 4.34520 4.41148 4.51965 4.60503 4.64866 4.78078 4.85007 4.93006 4.98423 5.04020 5.18884 5.20273 5.29343 5.30563 5.33816 5.37487 5.42001 5.47400 5.52504 5.54275 5.54665 5.66311 5.69813 5.74783 5.79425 5.81564 5.89266 5.91164 6.00348 6.02758 6.06952 6.36958 6.47959 7.02430 7.06842 7.26538 7.56863 8.08450 8.13308 8.58774 8.94165 9.40983 9.81767 10.80984 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.002632 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.062404 B =10637.286125 C =11933.396751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.607 5.607 3 C 0.524 3.476 4 O -0.535 6.535 5 C -0.130 4.130 6 C -0.082 4.082 7 C -0.164 4.164 8 C -0.165 4.165 9 C -0.151 4.151 10 C -0.075 4.075 11 C 0.133 3.867 12 H 0.112 0.888 13 C -0.131 4.131 14 C 0.030 3.970 15 N -0.483 5.483 16 C 0.033 3.967 17 C 0.450 3.550 18 O -0.558 6.558 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.272 1.272 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.029 3.971 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.041 0.959 45 H 0.094 0.906 46 H 0.048 0.952 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.043 0.957 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 16.351 18.944 26.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.340 5.340 3 C 0.312 3.688 4 O -0.412 6.412 5 C -0.151 4.151 6 C -0.119 4.119 7 C -0.164 4.164 8 C -0.201 4.201 9 C -0.188 4.188 10 C -0.113 4.113 11 C 0.029 3.971 12 H 0.130 0.870 13 C -0.170 4.170 14 C -0.099 4.099 15 N -0.208 5.208 16 C -0.099 4.099 17 C 0.236 3.764 18 O -0.439 6.439 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.100 4.100 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.059 0.941 45 H 0.112 0.888 46 H 0.066 0.934 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.061 0.939 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.833 16.402 18.573 25.704 hybrid contribution -2.467 -0.651 -0.021 2.551 sum -9.300 15.751 18.552 26.053 Atomic orbital electron populations 1.21795 0.79893 1.03554 1.01667 1.47903 1.06806 1.05855 1.73431 1.20515 0.87889 0.84977 0.75379 1.90696 1.13940 1.87153 1.49375 1.22611 1.00082 0.92172 1.00251 1.22433 1.01444 0.92812 0.95231 1.22140 1.02258 0.89751 1.02222 1.22807 1.00721 1.00311 0.96308 1.22790 0.96123 0.98945 1.00970 1.22385 0.97711 0.92830 0.98372 1.21915 0.98520 0.82041 0.94579 0.87005 1.22648 1.01505 0.95341 0.97488 1.23178 0.96687 0.98310 0.91681 1.65172 1.46467 1.08182 1.00936 1.22113 0.94779 0.99189 0.93779 1.19609 0.87133 0.84444 0.85216 1.90554 1.22832 1.47207 1.83326 1.42209 1.21605 1.49932 1.09309 1.19430 1.08092 1.33506 0.82254 0.86260 1.25038 0.98303 0.97722 0.95108 1.69622 1.38963 1.43170 1.00342 0.86677 0.84076 0.80226 0.78444 1.19703 1.20144 1.19484 1.23551 1.01828 0.87110 0.97483 0.92588 0.90729 0.90858 0.87007 0.88942 0.90578 0.88589 0.88557 0.88595 0.88610 0.91037 0.88150 0.90235 0.90933 0.89880 0.94072 0.88798 0.93436 0.79761 0.91607 0.93879 0.87225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 9.02 59.85 0.54 1.14 16 2 N -0.61 -7.00 2.80 -172.36 -0.48 -7.48 16 3 C 0.52 6.65 7.20 -10.99 -0.08 6.57 16 4 O -0.54 -8.93 15.25 5.56 0.08 -8.84 16 5 C -0.13 -1.19 2.79 -90.85 -0.25 -1.44 16 6 C -0.08 -0.71 6.91 -26.13 -0.18 -0.89 16 7 C -0.16 -1.35 3.08 -154.80 -0.48 -1.83 16 8 C -0.16 -1.25 10.53 -26.95 -0.28 -1.53 16 9 C -0.15 -1.01 10.53 -26.94 -0.28 -1.29 16 10 C -0.08 -0.71 7.43 -26.14 -0.19 -0.90 16 11 C 0.13 1.80 3.46 -66.55 -0.23 1.57 16 12 H 0.11 1.80 6.96 -51.93 -0.36 1.43 16 13 C -0.13 -1.43 6.47 -25.34 -0.16 -1.59 16 14 C 0.03 0.34 6.49 -2.17 -0.01 0.33 16 15 N -0.48 -7.72 5.18 -231.41 -1.20 -8.92 16 16 C 0.03 0.55 5.38 -4.97 -0.03 0.53 16 17 C 0.45 10.20 7.43 -10.99 -0.08 10.12 16 18 O -0.56 -14.95 14.01 5.55 0.08 -14.87 16 19 N -0.59 -14.01 5.09 -10.96 -0.06 -14.07 16 20 C -0.30 -8.59 10.16 -14.93 -0.15 -8.74 16 21 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.75 13.96 55.50 0.77 -24.98 16 24 Si 0.88 19.23 27.74 -169.99 -4.71 14.51 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.35 6.52 56.52 0.37 -4.99 16 28 C 0.03 0.46 5.11 -2.19 -0.01 0.45 16 29 H 0.06 0.35 7.88 -51.93 -0.41 -0.06 16 30 H 0.07 0.50 5.78 -51.93 -0.30 0.20 16 31 H 0.07 0.63 6.38 -51.93 -0.33 0.30 16 32 H 0.11 0.79 7.85 -51.93 -0.41 0.38 16 33 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 34 H 0.08 0.54 7.69 -51.93 -0.40 0.14 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 1.14 7.42 -51.93 -0.39 0.75 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.66 7.17 -51.93 -0.37 0.29 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.04 0.42 7.92 -51.93 -0.41 0.01 16 45 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.05 0.68 7.98 -51.93 -0.41 0.26 16 47 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.04 0.66 6.07 -51.93 -0.31 0.34 16 50 H 0.11 2.24 6.54 -51.93 -0.34 1.90 16 LS Contribution 392.56 15.07 5.92 5.92 Total: -1.00 -34.34 392.56 -9.63 -43.97 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -8.04 Total: 11.23 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.99 Total: 3.53 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.96 Total: -55.44 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.16 Total: -23.71 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.34 -9.63 -43.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269275976.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.471 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds