Wall clock time and date at job start Tue Mar 31 2020 18:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99432 * 2 1 4 4 O 1.21281 * 119.99710 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.00548 * 0.02562 * 3 2 1 6 6 C 1.53895 * 113.58776 * 277.66659 * 5 3 2 7 7 C 1.53259 * 86.88276 * 220.42669 * 6 5 3 8 8 C 1.52454 * 128.58837 * 165.11053 * 7 6 5 9 9 C 1.52459 * 128.58137 * 245.05781 * 7 6 5 10 10 C 1.53258 * 87.69168 * 25.07895 * 7 6 5 11 11 C 1.46495 * 120.00017 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.28528 * 180.70127 * 11 2 1 13 13 C 1.54262 * 110.32442 * 302.82245 * 11 2 1 14 14 C 1.54389 * 105.05852 * 118.99997 * 13 11 2 15 15 N 1.48565 * 104.58934 * 23.85513 * 14 13 11 16 16 C 1.46904 * 110.99450 * 200.96181 * 15 14 13 17 17 C 1.50703 * 109.46986 * 176.49480 * 16 15 14 18 18 O 1.21287 * 119.99865 * 6.05954 * 17 16 15 19 19 N 1.34773 * 119.99986 * 186.05593 * 17 16 15 20 20 C 1.37092 * 120.00186 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99675 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00244 * 179.97438 * 20 19 17 23 23 N 1.31407 * 119.99743 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99789 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47119 * 89.99765 * 24 22 20 26 26 H 1.48493 * 109.47009 * 209.99563 * 24 22 20 27 27 H 1.48498 * 109.47466 * 329.99800 * 24 22 20 28 28 C 1.48555 * 104.22430 * 320.51536 * 15 14 13 29 29 H 1.09005 * 109.47070 * 269.99627 * 1 2 3 30 30 H 1.08997 * 109.47216 * 29.99622 * 1 2 3 31 31 H 1.08998 * 109.47057 * 150.00137 * 1 2 3 32 32 H 1.09001 * 112.83010 * 48.88247 * 5 3 2 33 33 H 1.08998 * 113.64637 * 334.91883 * 6 5 3 34 34 H 1.08993 * 113.64522 * 105.93059 * 6 5 3 35 35 H 1.08996 * 117.52032 * 225.04748 * 8 7 6 36 36 H 1.09009 * 117.51029 * 10.15115 * 8 7 6 37 37 H 1.08994 * 117.51542 * 349.84538 * 9 7 6 38 38 H 1.09005 * 117.51161 * 134.90930 * 9 7 6 39 39 H 1.09003 * 113.64399 * 220.41580 * 10 7 6 40 40 H 1.09003 * 113.72446 * 89.43272 * 10 7 6 41 41 H 1.08998 * 110.32388 * 237.89613 * 13 11 2 42 42 H 1.09000 * 110.32331 * 0.10636 * 13 11 2 43 43 H 1.08999 * 110.40780 * 142.63132 * 14 13 11 44 44 H 1.08993 * 110.41105 * 265.08072 * 14 13 11 45 45 H 1.09003 * 109.47034 * 296.48930 * 16 15 14 46 46 H 1.08993 * 109.47290 * 56.49041 * 16 15 14 47 47 H 0.97001 * 119.99921 * 359.97438 * 19 17 16 48 48 H 0.97004 * 119.99919 * 180.02562 * 23 22 20 49 49 H 1.09004 * 110.41370 * 280.70528 * 28 15 14 50 50 H 1.09000 * 110.41196 * 158.26401 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 0.9139 2.9119 -1.3969 7 6 1.3114 4.3354 -0.9914 8 6 1.5028 5.5589 -1.8806 9 6 0.4162 5.5549 -0.8017 10 6 2.2987 3.7108 0.0005 11 6 2.1975 -1.2687 -0.0006 12 1 3.2718 -1.0848 0.0120 13 6 1.7863 -2.1253 1.2147 14 6 1.1872 -3.4145 0.6124 15 7 1.7941 -3.5129 -0.7400 16 6 0.9871 -4.3708 -1.6179 17 6 1.5849 -4.3777 -3.0013 18 8 2.6433 -3.8224 -3.2073 19 7 0.9435 -5.0011 -4.0094 20 6 1.4871 -5.0069 -5.2680 21 1 2.4295 -4.5123 -5.4515 22 6 0.8260 -5.6500 -6.3073 23 7 1.3474 -5.6560 -7.5136 24 14 -0.8036 -6.5060 -5.9898 25 1 -1.9168 -5.5472 -6.2059 26 1 -0.9502 -7.6528 -6.9217 27 1 -0.8395 -6.9986 -4.5893 28 6 1.8123 -2.1122 -1.2347 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.6020 2.5081 0.7577 33 1 1.5157 2.5047 -2.2094 34 1 -0.1568 2.7857 -1.5568 35 1 2.3841 6.1759 -1.7054 36 1 1.1812 5.4818 -2.9193 37 1 -0.6198 5.4751 -1.1306 38 1 0.5826 6.1688 0.0836 39 1 2.3380 4.2252 0.9607 40 1 3.2864 3.5256 -0.4217 41 1 2.6588 -2.3619 1.8237 42 1 1.0382 -1.6026 1.8106 43 1 1.4619 -4.2794 1.2163 44 1 0.1031 -3.3308 0.5374 45 1 0.9751 -5.3864 -1.2223 46 1 -0.0319 -3.9869 -1.6643 47 1 0.0973 -5.4456 -3.8446 48 1 0.8857 -6.1047 -8.2392 49 1 0.8260 -1.8248 -1.5989 50 1 2.5576 -1.9967 -2.0218 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269275976.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:25 Heat of formation + Delta-G solvation = -22.095089 kcal Electronic energy + Delta-G solvation = -29400.199772 eV Core-core repulsion = 25428.621018 eV Total energy + Delta-G solvation = -3971.578754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.81261 -40.78193 -39.81129 -38.79784 -36.37096 -35.90724 -34.59222 -33.79075 -32.48627 -29.76138 -28.56629 -27.75576 -26.80361 -26.17770 -25.24053 -23.31821 -22.38039 -21.75952 -21.25952 -20.18180 -19.94860 -19.33708 -18.46663 -17.75053 -17.56257 -16.82023 -16.76970 -16.48920 -16.22265 -16.09555 -15.79907 -15.61993 -15.29322 -14.88719 -14.68485 -14.25628 -14.18333 -14.06787 -13.71459 -13.66831 -13.42638 -13.19935 -13.11895 -12.98877 -12.93579 -12.74846 -12.52737 -12.43592 -12.33137 -12.32236 -12.21979 -11.98594 -11.77669 -11.49768 -11.31270 -11.27633 -10.74950 -10.51382 -10.40313 -10.26337 -9.69354 -9.40063 -8.42549 -6.04033 1.29176 1.34791 1.44364 1.51962 1.88738 1.93774 2.22359 2.68332 2.81387 3.13318 3.24369 3.35891 3.41852 3.56479 3.62112 3.73090 3.82854 3.90329 4.02150 4.10034 4.14977 4.21313 4.30917 4.34496 4.36645 4.42829 4.52047 4.59812 4.70674 4.72181 4.74535 4.79229 4.80884 4.84440 4.94365 4.98627 4.99155 5.04131 5.09193 5.14848 5.21450 5.29015 5.31059 5.46269 5.51063 5.82997 5.90482 6.02734 6.35742 6.58266 6.87000 7.12550 7.37764 7.96120 8.75427 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.002632 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.062404 B =10637.286125 C =11933.396751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.604 5.604 3 C 0.514 3.486 4 O -0.590 6.590 5 C -0.117 4.117 6 C -0.081 4.081 7 C -0.173 4.173 8 C -0.178 4.178 9 C -0.128 4.128 10 C -0.082 4.082 11 C 0.137 3.863 12 H 0.071 0.929 13 C -0.119 4.119 14 C 0.036 3.964 15 N -0.513 5.513 16 C 0.046 3.954 17 C 0.446 3.554 18 O -0.610 6.610 19 N -0.590 5.590 20 C -0.329 4.329 21 H 0.050 0.950 22 C -0.017 4.017 23 N -0.936 5.936 24 Si 0.968 3.032 25 H -0.255 1.255 26 H -0.276 1.276 27 H -0.229 1.229 28 C 0.037 3.963 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.125 0.875 46 H 0.086 0.914 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.053 0.947 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.187 15.982 22.427 30.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.336 5.336 3 C 0.304 3.696 4 O -0.470 6.470 5 C -0.138 4.138 6 C -0.118 4.118 7 C -0.173 4.173 8 C -0.215 4.215 9 C -0.164 4.164 10 C -0.120 4.120 11 C 0.032 3.968 12 H 0.089 0.911 13 C -0.157 4.157 14 C -0.091 4.091 15 N -0.239 5.239 16 C -0.085 4.085 17 C 0.234 3.766 18 O -0.494 6.494 19 N -0.232 5.232 20 C -0.458 4.458 21 H 0.069 0.931 22 C -0.215 4.215 23 N -0.577 5.577 24 Si 0.787 3.213 25 H -0.179 1.179 26 H -0.201 1.201 27 H -0.152 1.152 28 C -0.092 4.092 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.165 0.835 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.090 0.910 45 H 0.143 0.857 46 H 0.104 0.896 47 H 0.226 0.774 48 H 0.089 0.911 49 H 0.071 0.929 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.332 16.031 22.094 29.954 hybrid contribution -0.586 -0.454 -1.159 1.376 sum -12.918 15.578 20.935 29.117 Atomic orbital electron populations 1.22111 0.77069 1.04372 1.03974 1.48008 1.08454 1.04678 1.72452 1.21281 0.87539 0.86440 0.74342 1.90672 1.16511 1.87953 1.51910 1.22686 1.00182 0.89506 1.01379 1.22369 1.02293 0.93125 0.94024 1.22101 1.02848 0.89950 1.02362 1.22900 1.01710 1.00122 0.96773 1.22899 0.96255 0.96760 1.00534 1.22329 0.96626 0.93738 0.99277 1.21618 0.96852 0.83241 0.95078 0.91066 1.22602 1.02305 0.94741 0.96074 1.23286 0.98188 0.98979 0.88678 1.65078 1.48235 1.07588 1.02951 1.22060 0.95767 1.01390 0.89288 1.20962 0.86219 0.81971 0.87414 1.90557 1.25452 1.48725 1.84716 1.42012 1.22473 1.50836 1.07890 1.18970 1.06784 1.34766 0.85276 0.93135 1.26173 1.03531 0.97871 0.93959 1.69816 1.41630 1.44318 1.01909 0.85331 0.76881 0.78603 0.80481 1.17923 1.20073 1.15194 1.23248 1.00326 0.88522 0.97068 0.89374 0.89149 0.90904 0.83506 0.91921 0.88128 0.88633 0.88597 0.87094 0.87355 0.89662 0.91444 0.90401 0.87944 0.88230 0.91023 0.85697 0.89599 0.77390 0.91123 0.92866 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 9.02 127.77 1.15 1.98 16 2 N -0.60 -13.44 2.80 -817.61 -2.29 -15.73 16 3 C 0.51 13.35 7.20 87.65 0.63 13.98 16 4 O -0.59 -21.46 15.25 -3.03 -0.05 -21.50 16 5 C -0.12 -1.99 2.79 -10.94 -0.03 -2.02 16 6 C -0.08 -1.34 6.91 30.98 0.21 -1.12 16 7 C -0.17 -2.66 3.08 -52.37 -0.16 -2.82 16 8 C -0.18 -2.57 10.53 30.45 0.32 -2.24 16 9 C -0.13 -1.34 10.53 30.46 0.32 -1.02 16 10 C -0.08 -1.54 7.43 30.98 0.23 -1.31 16 11 C 0.14 3.77 3.46 45.89 0.16 3.93 16 12 H 0.07 2.53 6.96 -2.39 -0.02 2.51 16 13 C -0.12 -2.27 6.47 31.49 0.20 -2.06 16 14 C 0.04 0.67 6.49 86.45 0.56 1.24 16 15 N -0.51 -15.67 5.18 -886.03 -4.59 -20.26 16 16 C 0.05 1.40 5.38 85.56 0.46 1.86 16 17 C 0.45 20.49 7.43 87.66 0.65 21.14 16 18 O -0.61 -35.06 14.01 -3.05 -0.04 -35.10 16 19 N -0.59 -27.96 5.09 -306.99 -1.56 -29.52 16 20 C -0.33 -19.52 10.16 84.04 0.85 -18.67 16 21 H 0.05 3.61 7.39 -2.91 -0.02 3.59 16 22 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 23 N -0.94 -57.07 13.96 21.66 0.30 -56.77 16 24 Si 0.97 38.43 27.74 68.60 1.90 40.33 16 25 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 26 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.23 -7.54 6.52 99.48 0.65 -6.89 16 28 C 0.04 1.24 5.11 86.45 0.44 1.68 16 29 H 0.09 0.61 7.88 -2.38 -0.02 0.59 16 30 H 0.09 0.86 5.78 -2.39 -0.01 0.85 16 31 H 0.07 0.96 6.38 -2.39 -0.02 0.94 16 32 H 0.15 1.49 7.85 -2.39 -0.02 1.47 16 33 H 0.06 1.41 8.09 -2.39 -0.02 1.39 16 34 H 0.10 1.15 7.69 -2.39 -0.02 1.14 16 35 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.71 7.42 -2.39 -0.02 1.69 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.10 1.38 7.17 -2.39 -0.02 1.36 16 43 H 0.10 1.62 8.14 -2.39 -0.02 1.61 16 44 H 0.07 0.98 7.92 -2.39 -0.02 0.97 16 45 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 46 H 0.09 2.00 7.98 -2.39 -0.02 1.98 16 47 H 0.39 15.03 5.76 -92.71 -0.53 14.49 16 48 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 49 H 0.05 1.60 6.07 -2.39 -0.01 1.58 16 50 H 0.05 2.17 6.54 -2.39 -0.02 2.16 16 Total: -1.00 -87.54 392.56 0.50 -87.03 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: 0.36 Total: 37.49 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 6.48 Total: 14.04 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -8.14 Total: -122.28 kcal Atomic # 8 Polarization: -56.52 SS G_CDS: -0.09 Total: -56.61 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.90 Total: 40.33 kcal Total: -87.54 0.50 -87.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269275976.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.936 kcal (2) G-P(sol) polarization free energy of solvation -87.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds