Wall clock time and date at job start Tue Mar 31 2020 18:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34770 * 120.00105 * 2 1 4 4 O 1.21280 * 119.99806 * 355.08328 * 3 2 1 5 5 C 1.50695 * 120.00224 * 175.08193 * 3 2 1 6 6 C 1.50701 * 115.55025 * 297.50006 * 5 3 2 7 7 O 1.21282 * 120.00250 * 93.48000 * 6 5 3 8 8 N 1.34782 * 119.99643 * 273.75335 * 6 5 3 9 9 C 1.47473 * 125.66363 * 4.20188 * 8 6 5 10 10 C 1.55235 * 104.79451 * 155.92633 * 9 8 6 11 11 C 1.54521 * 101.43892 * 36.66280 * 10 9 8 12 12 C 1.47172 * 125.65830 * 184.50446 * 8 6 5 13 13 C 1.52278 * 110.20258 * 83.42191 * 11 10 9 14 14 C 1.53315 * 109.41607 * 182.19816 * 13 11 10 15 15 N 1.46920 * 108.71194 * 306.49412 * 14 13 11 16 16 C 1.36940 * 120.56529 * 234.21563 * 15 14 13 17 17 H 1.08001 * 119.99762 * 29.64525 * 16 15 14 18 18 C 1.38807 * 120.00077 * 209.65380 * 16 15 14 19 19 N 1.31624 * 120.00174 * 14.99095 * 18 16 15 20 20 Si 1.86795 * 120.00268 * 194.99356 * 18 16 15 21 21 H 1.48501 * 109.47088 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47654 * 119.99688 * 20 18 16 23 23 H 1.48502 * 109.47261 * 240.00101 * 20 18 16 24 24 C 1.46933 * 118.87281 * 54.23251 * 15 14 13 25 25 C 1.52267 * 110.21017 * 206.60921 * 11 10 9 26 26 C 1.53006 * 117.51908 * 83.19741 * 5 3 2 27 27 C 1.52996 * 117.50213 * 151.82774 * 5 3 2 28 28 H 1.09005 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47005 * 299.99706 * 1 2 3 30 30 H 1.08998 * 109.47599 * 60.00155 * 1 2 3 31 31 H 0.97004 * 119.99755 * 180.02562 * 2 1 3 32 32 H 1.09004 * 110.35203 * 274.87537 * 9 8 6 33 33 H 1.09004 * 110.35931 * 37.15814 * 9 8 6 34 34 H 1.09000 * 111.20324 * 278.57037 * 10 9 8 35 35 H 1.09006 * 110.91559 * 154.62833 * 10 9 8 36 36 H 1.09001 * 109.91130 * 300.84271 * 12 8 6 37 37 H 1.09008 * 109.91021 * 61.91565 * 12 8 6 38 38 H 1.08996 * 109.48158 * 302.18703 * 13 11 10 39 39 H 1.09005 * 109.47818 * 62.21640 * 13 11 10 40 40 H 1.09004 * 109.59480 * 186.72088 * 14 13 11 41 41 H 1.08997 * 109.59310 * 66.26723 * 14 13 11 42 42 H 0.96994 * 120.00308 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.59939 * 185.99144 * 24 15 14 44 44 H 1.09005 * 109.59797 * 65.52265 * 24 15 14 45 45 H 1.09004 * 109.48512 * 297.77892 * 25 11 10 46 46 H 1.09000 * 109.48318 * 57.80882 * 25 11 10 47 47 H 1.09000 * 117.49728 * 214.97338 * 26 5 3 48 48 H 1.08997 * 117.49688 * 359.97438 * 26 5 3 49 49 H 1.09004 * 117.49834 * 359.97438 * 27 5 3 50 50 H 1.08999 * 117.50141 * 144.99754 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5358 2.2155 -0.0900 5 6 3.6416 1.1696 0.1119 6 6 4.1993 0.5951 1.3886 7 8 4.5174 -0.5742 1.4394 8 7 4.3394 1.3794 2.4757 9 6 3.9088 2.7858 2.5825 10 6 3.7076 3.0244 4.1032 11 6 4.8566 2.1813 4.7003 12 6 4.9532 0.9763 3.7512 13 6 6.1542 2.9782 4.6896 14 6 7.2920 2.1068 5.2342 15 7 6.8948 1.5792 6.5466 16 6 7.6937 1.7657 7.6430 17 1 8.3243 2.6400 7.7092 18 6 7.6934 0.8310 8.6692 19 7 7.1690 -0.3604 8.4740 20 14 8.4369 1.2638 10.3272 21 1 8.9567 2.6543 10.2887 22 1 7.3962 1.1530 11.3806 23 1 9.5496 0.3282 10.6302 24 6 5.6258 0.8476 6.6626 25 6 4.4988 1.7273 6.1090 26 6 4.4464 0.9524 -1.1712 27 6 4.3957 2.3384 -0.5253 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 4.6800 3.4492 2.1910 33 1 2.9708 2.9369 2.0481 34 1 2.7377 2.6543 4.4354 35 1 3.8273 4.0792 4.3507 36 1 4.4126 0.1283 4.1717 37 1 5.9978 0.7084 3.5921 38 1 6.3857 3.2821 3.6688 39 1 6.0423 3.8633 5.3159 40 1 8.1947 2.7085 5.3400 41 1 7.4793 1.2800 4.5491 42 1 7.1684 -1.0135 9.1911 43 1 5.4301 0.6189 7.7103 44 1 5.6832 -0.0773 6.0887 45 1 4.3699 2.5993 6.7503 46 1 3.5712 1.1555 6.0821 47 1 5.3792 0.3940 -1.0917 48 1 3.8889 0.8072 -2.0964 49 1 3.8047 3.1055 -1.0258 50 1 5.2950 2.6920 -0.0211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269714138.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:50 Heat of formation + Delta-G solvation = -18.487147 kcal Electronic energy + Delta-G solvation = -30693.413960 eV Core-core repulsion = 26721.991658 eV Total energy + Delta-G solvation = -3971.422302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.03676 -39.82139 -38.46203 -36.29947 -35.88334 -34.85704 -33.07932 -31.12602 -30.12310 -29.17700 -28.02034 -26.97583 -25.15581 -23.92173 -23.05246 -22.72057 -22.17779 -21.26594 -20.68133 -19.49354 -18.22436 -17.83863 -16.63889 -16.44348 -16.16060 -16.08634 -15.71899 -15.11210 -14.87052 -14.68257 -14.14735 -14.02137 -13.79756 -13.56821 -13.25119 -13.14048 -13.02283 -12.84865 -12.61722 -12.59184 -12.31157 -12.06639 -11.86764 -11.62937 -11.44544 -11.37277 -11.17058 -10.99911 -10.85684 -10.73278 -10.43294 -10.32268 -10.22657 -10.17960 -9.84658 -9.76875 -9.53831 -9.46516 -9.36630 -8.57839 -8.46450 -6.63172 -5.78051 -3.23038 2.06351 2.47615 2.79899 2.85271 3.36710 3.44545 3.44739 3.46615 4.22555 4.30617 4.43792 4.49351 4.53865 4.70184 4.84472 4.91864 5.04487 5.17643 5.22924 5.31156 5.34110 5.37521 5.40648 5.45469 5.50149 5.58203 5.67226 5.72440 5.74130 5.94179 5.98939 6.03629 6.07452 6.12024 6.15018 6.26618 6.32795 6.50723 6.59917 6.65067 6.73995 6.83137 6.96966 7.10390 7.36135 7.49467 7.67194 7.80085 7.84059 8.06400 8.46807 9.22222 9.84952 10.42240 11.29985 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022884 B = 0.002793 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.286260 B =10021.047457 C =10162.567793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.727 5.727 3 C 0.562 3.438 4 O -0.529 6.529 5 C -0.193 4.193 6 C 0.566 3.434 7 O -0.531 6.531 8 N -0.604 5.604 9 C 0.099 3.901 10 C -0.127 4.127 11 C -0.055 4.055 12 C 0.118 3.882 13 C -0.118 4.118 14 C 0.143 3.857 15 N -0.591 5.591 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.170 3.830 25 C -0.126 4.126 26 C -0.129 4.129 27 C -0.131 4.131 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.409 0.591 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.088 0.912 44 H 0.019 0.981 45 H 0.061 0.939 46 H 0.050 0.950 47 H 0.112 0.888 48 H 0.107 0.893 49 H 0.114 0.886 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.059 4.290 -18.483 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.378 5.378 3 C 0.347 3.653 4 O -0.405 6.405 5 C -0.199 4.199 6 C 0.352 3.648 7 O -0.408 6.408 8 N -0.337 5.337 9 C -0.024 4.024 10 C -0.165 4.165 11 C -0.056 4.056 12 C -0.003 4.003 13 C -0.158 4.158 14 C 0.017 3.983 15 N -0.313 5.313 16 C -0.382 4.382 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.044 3.956 25 C -0.166 4.166 26 C -0.166 4.166 27 C -0.169 4.169 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.244 0.756 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.037 0.963 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.130 0.870 48 H 0.126 0.874 49 H 0.132 0.868 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.352 4.224 -18.425 22.049 hybrid contribution 0.475 -0.325 0.952 1.113 sum -10.877 3.900 -17.472 20.947 Atomic orbital electron populations 1.21590 0.79049 1.02589 1.02418 1.45754 1.07944 1.08942 1.75174 1.19009 0.86795 0.83815 0.75719 1.90710 1.69292 1.31446 1.49061 1.21391 0.92753 1.09785 0.95967 1.18611 0.78634 0.85229 0.82286 1.90734 1.50873 1.15737 1.83444 1.48563 1.58903 1.13183 1.13062 1.22490 0.99976 0.81938 0.97974 1.22934 0.99295 1.01063 0.93192 1.20976 0.95226 0.93811 0.95547 1.22195 0.98734 0.97762 0.81597 1.21923 0.95332 0.98919 0.99586 1.20962 0.94399 0.94769 0.88165 1.44021 1.19315 1.64626 1.03365 1.19212 1.20340 1.02655 0.95951 0.91766 1.25095 1.00075 0.94616 0.99804 1.70021 1.49123 1.03796 1.31711 0.86233 0.78488 0.77800 0.84302 1.20281 1.21597 1.21740 1.20824 0.82614 0.90814 1.01328 1.22115 0.99763 1.01077 0.93641 1.23083 1.01102 0.99499 0.92948 1.23118 1.01143 0.91533 1.01095 0.90342 0.92068 0.91982 0.75648 0.91140 0.90513 0.90860 0.89829 0.91196 0.90456 0.93141 0.91808 0.92748 0.96433 0.93683 0.89405 0.96299 0.92045 0.93146 0.86957 0.87437 0.86777 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 10.71 59.85 0.64 1.31 16 2 N -0.73 -7.13 5.71 -67.08 -0.38 -7.52 16 3 C 0.56 6.74 6.83 -10.99 -0.08 6.66 16 4 O -0.53 -7.57 16.44 5.56 0.09 -7.48 16 5 C -0.19 -2.19 1.43 -156.81 -0.22 -2.41 16 6 C 0.57 8.25 6.97 -10.98 -0.08 8.18 16 7 O -0.53 -9.36 17.40 5.56 0.10 -9.26 16 8 N -0.60 -8.72 3.33 -170.54 -0.57 -9.29 16 9 C 0.10 1.20 5.69 -2.33 -0.01 1.19 16 10 C -0.13 -1.61 6.00 -24.75 -0.15 -1.76 16 11 C -0.05 -0.86 0.53 -154.09 -0.08 -0.94 16 12 C 0.12 1.97 5.05 -3.31 -0.02 1.95 16 13 C -0.12 -1.92 4.78 -26.94 -0.13 -2.05 16 14 C 0.14 2.92 6.22 -3.65 -0.02 2.90 16 15 N -0.59 -14.42 2.98 -172.16 -0.51 -14.93 16 16 C -0.25 -6.81 9.57 -15.06 -0.14 -6.95 16 17 H 0.06 1.71 7.87 -52.49 -0.41 1.30 16 18 C 0.00 0.07 4.95 -17.43 -0.09 -0.01 16 19 N -0.90 -26.03 11.17 55.49 0.62 -25.41 16 20 Si 0.90 21.55 29.58 -169.99 -5.03 16.52 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 C 0.17 3.94 5.02 -3.64 -0.02 3.93 16 25 C -0.13 -2.30 4.70 -26.94 -0.13 -2.43 16 26 C -0.13 -1.13 9.92 -26.73 -0.27 -1.40 16 27 C -0.13 -1.20 8.98 -26.73 -0.24 -1.44 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.41 3.62 8.83 -40.82 -0.36 3.26 16 32 H 0.07 0.76 7.74 -51.93 -0.40 0.36 16 33 H 0.08 0.94 7.35 -51.93 -0.38 0.56 16 34 H 0.07 0.93 8.01 -51.93 -0.42 0.51 16 35 H 0.08 0.95 8.01 -51.93 -0.42 0.54 16 36 H 0.07 1.27 7.59 -51.93 -0.39 0.88 16 37 H 0.08 1.43 6.08 -51.92 -0.32 1.11 16 38 H 0.05 0.72 7.47 -51.93 -0.39 0.33 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 41 H 0.02 0.37 6.53 -51.93 -0.34 0.04 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 44 H 0.02 0.47 7.47 -51.93 -0.39 0.08 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 47 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.11 0.99 7.94 -51.93 -0.41 0.58 16 50 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 391.75 15.07 5.90 5.90 Total: -1.00 -32.61 391.75 -9.10 -41.71 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -8.29 Total: 3.05 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -1.03 Total: 6.71 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.84 Total: -57.15 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.19 Total: -16.75 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.61 -9.10 -41.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269714138.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.224 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds