Wall clock time and date at job start Tue Mar 31 2020 18:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34770 * 120.00105 * 2 1 4 4 O 1.21280 * 119.99806 * 355.08328 * 3 2 1 5 5 C 1.50695 * 120.00224 * 175.08193 * 3 2 1 6 6 C 1.50701 * 115.55025 * 297.50006 * 5 3 2 7 7 O 1.21282 * 120.00250 * 93.48000 * 6 5 3 8 8 N 1.34782 * 119.99643 * 273.75335 * 6 5 3 9 9 C 1.47473 * 125.66363 * 4.20188 * 8 6 5 10 10 C 1.55235 * 104.79451 * 155.92633 * 9 8 6 11 11 C 1.54521 * 101.43892 * 36.66280 * 10 9 8 12 12 C 1.47172 * 125.65830 * 184.50446 * 8 6 5 13 13 C 1.52278 * 110.20258 * 83.42191 * 11 10 9 14 14 C 1.53315 * 109.41607 * 182.19816 * 13 11 10 15 15 N 1.46920 * 108.71194 * 306.49412 * 14 13 11 16 16 C 1.36940 * 120.56529 * 234.21563 * 15 14 13 17 17 H 1.08001 * 119.99762 * 29.64525 * 16 15 14 18 18 C 1.38807 * 120.00077 * 209.65380 * 16 15 14 19 19 N 1.31624 * 120.00174 * 14.99095 * 18 16 15 20 20 Si 1.86795 * 120.00268 * 194.99356 * 18 16 15 21 21 H 1.48501 * 109.47088 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47654 * 119.99688 * 20 18 16 23 23 H 1.48502 * 109.47261 * 240.00101 * 20 18 16 24 24 C 1.46933 * 118.87281 * 54.23251 * 15 14 13 25 25 C 1.52267 * 110.21017 * 206.60921 * 11 10 9 26 26 C 1.53006 * 117.51908 * 83.19741 * 5 3 2 27 27 C 1.52996 * 117.50213 * 151.82774 * 5 3 2 28 28 H 1.09005 * 109.46895 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47005 * 299.99706 * 1 2 3 30 30 H 1.08998 * 109.47599 * 60.00155 * 1 2 3 31 31 H 0.97004 * 119.99755 * 180.02562 * 2 1 3 32 32 H 1.09004 * 110.35203 * 274.87537 * 9 8 6 33 33 H 1.09004 * 110.35931 * 37.15814 * 9 8 6 34 34 H 1.09000 * 111.20324 * 278.57037 * 10 9 8 35 35 H 1.09006 * 110.91559 * 154.62833 * 10 9 8 36 36 H 1.09001 * 109.91130 * 300.84271 * 12 8 6 37 37 H 1.09008 * 109.91021 * 61.91565 * 12 8 6 38 38 H 1.08996 * 109.48158 * 302.18703 * 13 11 10 39 39 H 1.09005 * 109.47818 * 62.21640 * 13 11 10 40 40 H 1.09004 * 109.59480 * 186.72088 * 14 13 11 41 41 H 1.08997 * 109.59310 * 66.26723 * 14 13 11 42 42 H 0.96994 * 120.00308 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.59939 * 185.99144 * 24 15 14 44 44 H 1.09005 * 109.59797 * 65.52265 * 24 15 14 45 45 H 1.09004 * 109.48512 * 297.77892 * 25 11 10 46 46 H 1.09000 * 109.48318 * 57.80882 * 25 11 10 47 47 H 1.09000 * 117.49728 * 214.97338 * 26 5 3 48 48 H 1.08997 * 117.49688 * 359.97438 * 26 5 3 49 49 H 1.09004 * 117.49834 * 359.97438 * 27 5 3 50 50 H 1.08999 * 117.50141 * 144.99754 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5358 2.2155 -0.0900 5 6 3.6416 1.1696 0.1119 6 6 4.1993 0.5951 1.3886 7 8 4.5174 -0.5742 1.4394 8 7 4.3394 1.3794 2.4757 9 6 3.9088 2.7858 2.5825 10 6 3.7076 3.0244 4.1032 11 6 4.8566 2.1813 4.7003 12 6 4.9532 0.9763 3.7512 13 6 6.1542 2.9782 4.6896 14 6 7.2920 2.1068 5.2342 15 7 6.8948 1.5792 6.5466 16 6 7.6937 1.7657 7.6430 17 1 8.3243 2.6400 7.7092 18 6 7.6934 0.8310 8.6692 19 7 7.1690 -0.3604 8.4740 20 14 8.4369 1.2638 10.3272 21 1 8.9567 2.6543 10.2887 22 1 7.3962 1.1530 11.3806 23 1 9.5496 0.3282 10.6302 24 6 5.6258 0.8476 6.6626 25 6 4.4988 1.7273 6.1090 26 6 4.4464 0.9524 -1.1712 27 6 4.3957 2.3384 -0.5253 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 4.6800 3.4492 2.1910 33 1 2.9708 2.9369 2.0481 34 1 2.7377 2.6543 4.4354 35 1 3.8273 4.0792 4.3507 36 1 4.4126 0.1283 4.1717 37 1 5.9978 0.7084 3.5921 38 1 6.3857 3.2821 3.6688 39 1 6.0423 3.8633 5.3159 40 1 8.1947 2.7085 5.3400 41 1 7.4793 1.2800 4.5491 42 1 7.1684 -1.0135 9.1911 43 1 5.4301 0.6189 7.7103 44 1 5.6832 -0.0773 6.0887 45 1 4.3699 2.5993 6.7503 46 1 3.5712 1.1555 6.0821 47 1 5.3792 0.3940 -1.0917 48 1 3.8889 0.8072 -2.0964 49 1 3.8047 3.1055 -1.0258 50 1 5.2950 2.6920 -0.0211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269714138.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:49 Heat of formation + Delta-G solvation = -40.273905 kcal Electronic energy + Delta-G solvation = -30694.358705 eV Core-core repulsion = 26721.991658 eV Total energy + Delta-G solvation = -3972.367047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.07906 -40.95093 -39.66289 -37.46276 -37.15559 -35.68835 -34.73792 -32.82577 -31.69615 -30.55772 -28.88969 -28.27044 -26.67816 -25.13223 -24.28963 -23.77686 -23.44545 -22.33646 -22.13493 -20.42172 -19.76261 -18.96464 -18.27888 -17.52714 -17.29864 -17.00589 -16.84769 -16.67894 -15.97198 -15.74074 -15.62202 -15.39521 -15.12106 -14.86760 -14.65460 -14.49075 -14.33253 -13.92014 -13.76640 -13.70675 -13.29600 -13.18474 -13.16086 -13.00519 -12.78398 -12.62920 -12.57437 -12.44707 -12.26697 -12.04062 -11.97178 -11.87470 -11.72376 -11.46392 -11.22171 -11.08707 -11.01780 -10.84495 -10.53130 -10.25416 -9.77523 -8.63291 -7.85857 -5.34059 1.09803 1.44529 1.45933 1.47674 1.58165 1.77654 2.07303 2.51414 2.62605 3.21970 3.30053 3.53330 3.56688 3.60963 3.70783 3.72839 3.76652 3.81139 4.22205 4.23179 4.35785 4.36850 4.51730 4.54512 4.56430 4.59931 4.62628 4.65681 4.70668 4.75329 4.82657 4.86519 4.87171 4.93643 5.02388 5.06195 5.07606 5.11234 5.24831 5.28364 5.29621 5.37224 5.40269 5.53793 5.66040 5.77860 6.30512 6.38213 6.41225 6.92185 7.00206 7.16354 7.87520 8.39599 9.19879 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022884 B = 0.002793 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.286260 B =10021.047457 C =10162.567793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.723 5.723 3 C 0.561 3.439 4 O -0.555 6.555 5 C -0.207 4.207 6 C 0.564 3.436 7 O -0.571 6.571 8 N -0.605 5.605 9 C 0.102 3.898 10 C -0.116 4.116 11 C -0.051 4.051 12 C 0.126 3.874 13 C -0.104 4.104 14 C 0.139 3.861 15 N -0.608 5.608 16 C -0.259 4.259 17 H 0.068 0.932 18 C -0.053 4.053 19 N -0.937 5.937 20 Si 0.967 3.033 21 H -0.264 1.264 22 H -0.290 1.290 23 H -0.295 1.295 24 C 0.179 3.821 25 C -0.113 4.113 26 C -0.116 4.116 27 C -0.118 4.118 28 H 0.106 0.894 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.413 0.587 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.005 0.995 42 H 0.248 0.752 43 H 0.051 0.949 44 H -0.011 1.011 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.110 0.890 48 H 0.127 0.873 49 H 0.124 0.876 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.851 6.720 -20.122 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.374 5.374 3 C 0.345 3.655 4 O -0.433 6.433 5 C -0.213 4.213 6 C 0.352 3.648 7 O -0.450 6.450 8 N -0.337 5.337 9 C -0.019 4.019 10 C -0.153 4.153 11 C -0.051 4.051 12 C 0.004 3.996 13 C -0.143 4.143 14 C 0.013 3.987 15 N -0.332 5.332 16 C -0.389 4.389 17 H 0.085 0.915 18 C -0.248 4.248 19 N -0.583 5.583 20 Si 0.795 3.205 21 H -0.188 1.188 22 H -0.217 1.217 23 H -0.222 1.222 24 C 0.053 3.947 25 C -0.152 4.152 26 C -0.153 4.153 27 C -0.155 4.155 28 H 0.125 0.875 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.248 0.752 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.128 0.872 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.023 0.977 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.007 0.993 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.128 0.872 48 H 0.145 0.855 49 H 0.142 0.858 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.159 6.682 -20.094 24.418 hybrid contribution 0.745 -1.168 1.415 1.981 sum -11.413 5.514 -18.679 22.573 Atomic orbital electron populations 1.21754 0.77782 1.04409 1.02021 1.45855 1.08912 1.08645 1.73970 1.19092 0.86930 0.83920 0.75511 1.90691 1.69738 1.32275 1.50628 1.21265 0.92680 1.12176 0.95161 1.19165 0.77793 0.84722 0.83090 1.90710 1.52509 1.17549 1.84237 1.48635 1.58528 1.14317 1.12189 1.22637 1.01001 0.80624 0.97661 1.22902 0.97645 1.01774 0.93016 1.20866 0.96657 0.93946 0.93676 1.21896 0.97076 0.97556 0.83103 1.21767 0.93432 0.97936 1.01119 1.21119 0.96384 0.94918 0.86246 1.44287 1.19625 1.64799 1.04440 1.19558 1.20053 1.02437 0.96855 0.91452 1.25861 1.01195 0.94556 1.03162 1.70193 1.50953 1.04810 1.32387 0.85210 0.77322 0.77900 0.80037 1.18840 1.21730 1.22207 1.20572 0.84327 0.90922 0.98877 1.21901 0.97960 1.00166 0.95194 1.23218 1.00550 0.99181 0.92394 1.23232 1.00756 0.91446 1.00111 0.87525 0.93030 0.91736 0.75186 0.88801 0.89957 0.90644 0.87236 0.93737 0.92893 0.90076 0.91021 0.92691 0.97678 0.94259 0.93054 0.99287 0.91618 0.92062 0.87179 0.85469 0.85830 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.71 127.77 1.37 2.52 16 2 N -0.72 -13.20 5.71 -484.53 -2.77 -15.97 16 3 C 0.56 12.49 6.83 87.66 0.60 13.09 16 4 O -0.55 -14.84 16.44 -3.03 -0.05 -14.89 16 5 C -0.21 -4.32 1.43 -53.67 -0.08 -4.39 16 6 C 0.56 16.02 6.97 87.66 0.61 16.63 16 7 O -0.57 -20.40 17.40 -3.04 -0.05 -20.46 16 8 N -0.60 -16.69 3.33 -811.84 -2.70 -19.40 16 9 C 0.10 2.15 5.69 86.96 0.50 2.65 16 10 C -0.12 -2.54 6.00 31.88 0.19 -2.35 16 11 C -0.05 -1.52 0.53 -51.91 -0.03 -1.54 16 12 C 0.13 4.21 5.05 86.48 0.44 4.65 16 13 C -0.10 -3.13 4.78 30.46 0.15 -2.99 16 14 C 0.14 5.62 6.22 86.41 0.54 6.16 16 15 N -0.61 -30.30 2.98 -698.60 -2.08 -32.38 16 16 C -0.26 -14.17 9.57 84.03 0.80 -13.37 16 17 H 0.07 3.58 7.87 -2.91 -0.02 3.56 16 18 C -0.05 -2.96 4.95 84.86 0.42 -2.54 16 19 N -0.94 -56.31 11.17 21.65 0.24 -56.07 16 20 Si 0.97 45.07 29.58 68.60 2.03 47.10 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 24 C 0.18 8.64 5.02 86.40 0.43 9.08 16 25 C -0.11 -4.08 4.70 30.46 0.14 -3.94 16 26 C -0.12 -1.78 9.92 30.60 0.30 -1.47 16 27 C -0.12 -1.82 8.98 30.59 0.27 -1.54 16 28 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.41 6.87 8.83 -92.70 -0.82 6.05 16 32 H 0.09 1.59 7.74 -2.38 -0.02 1.57 16 33 H 0.08 1.73 7.35 -2.38 -0.02 1.72 16 34 H 0.07 1.68 8.01 -2.39 -0.02 1.66 16 35 H 0.11 1.94 8.01 -2.38 -0.02 1.92 16 36 H 0.04 1.69 7.59 -2.39 -0.02 1.67 16 37 H 0.05 2.02 6.08 -2.38 -0.01 2.01 16 38 H 0.08 2.00 7.47 -2.39 -0.02 1.98 16 39 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.05 2.18 7.93 -2.38 -0.02 2.16 16 41 H 0.01 0.23 6.53 -2.39 -0.02 0.21 16 42 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 43 H 0.05 2.84 6.07 -2.39 -0.01 2.82 16 44 H -0.01 -0.58 7.47 -2.38 -0.02 -0.60 16 45 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 46 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 47 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.12 1.73 7.94 -2.39 -0.02 1.71 16 50 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -73.78 391.75 1.40 -72.38 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.12 Total: 19.04 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 6.66 Total: 20.64 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -7.31 Total: -123.81 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.10 Total: -35.34 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -73.78 1.40 -72.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269714138.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.109 kcal (2) G-P(sol) polarization free energy of solvation -73.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds