Wall clock time and date at job start Tue Mar 31 2020 18:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 120.00241 * 2 1 4 4 C 1.50698 * 109.47361 * 89.99650 * 3 2 1 5 5 O 1.21285 * 119.99605 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00452 * 179.97438 * 4 3 2 7 7 C 1.47612 * 126.91710 * 359.97438 * 6 4 3 8 8 C 1.54352 * 107.05508 * 205.03496 * 7 6 4 9 9 C 1.53093 * 104.72526 * 357.72257 * 8 7 6 10 10 C 1.53646 * 111.77681 * 100.54324 * 9 8 7 11 11 C 1.55191 * 101.41198 * 155.68439 * 10 9 8 12 12 N 1.47559 * 105.00795 * 324.51946 * 11 10 9 13 13 C 1.36935 * 125.67428 * 203.81733 * 12 11 10 14 14 H 1.08001 * 119.99835 * 180.02562 * 13 12 11 15 15 C 1.38807 * 119.99949 * 0.04915 * 13 12 11 16 16 N 1.31623 * 120.00211 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00056 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47050 * 89.99522 * 17 15 13 19 19 H 1.48501 * 109.47046 * 209.99558 * 17 15 13 20 20 H 1.48498 * 109.47264 * 329.99930 * 17 15 13 21 21 C 1.47414 * 108.65163 * 23.85935 * 12 11 10 22 22 C 1.48404 * 126.92390 * 180.02562 * 6 4 3 23 23 C 1.34783 * 119.99547 * 179.97438 * 2 1 3 24 24 O 1.21279 * 119.99671 * 180.02562 * 23 2 1 25 25 C 1.50695 * 120.00016 * 359.97438 * 23 2 1 26 26 C 1.53004 * 117.49907 * 248.74678 * 25 23 2 27 27 C 1.53000 * 117.49593 * 180.08913 * 25 23 2 28 28 H 1.08998 * 109.47273 * 89.99573 * 1 2 3 29 29 H 1.08992 * 109.47527 * 210.00023 * 1 2 3 30 30 H 1.09000 * 109.47128 * 330.00242 * 1 2 3 31 31 H 1.09008 * 109.46933 * 329.99917 * 3 2 1 32 32 H 1.09000 * 109.47023 * 209.99788 * 3 2 1 33 33 H 1.09007 * 109.92088 * 85.68235 * 7 6 4 34 34 H 1.08999 * 109.92224 * 324.38709 * 7 6 4 35 35 H 1.09002 * 110.40824 * 116.56937 * 8 7 6 36 36 H 1.09002 * 110.40516 * 238.88326 * 8 7 6 37 37 H 1.09003 * 111.03482 * 273.71778 * 10 9 8 38 38 H 1.08994 * 111.03706 * 37.65072 * 10 9 8 39 39 H 1.08997 * 110.33103 * 205.63616 * 11 10 9 40 40 H 1.09002 * 110.41886 * 83.45092 * 11 10 9 41 41 H 0.96993 * 120.00075 * 179.97438 * 16 15 13 42 42 H 1.09005 * 109.98245 * 238.53565 * 21 12 11 43 43 H 1.08994 * 109.99064 * 117.22954 * 21 12 11 44 44 H 1.09001 * 110.68322 * 260.79365 * 22 6 4 45 45 H 1.09000 * 110.68339 * 23.96437 * 22 6 4 46 46 H 1.09001 * 115.55304 * 34.41980 * 25 23 2 47 47 H 1.09001 * 117.49416 * 0.02562 * 26 25 23 48 48 H 1.09001 * 117.49564 * 145.01986 * 26 25 23 49 49 H 1.09003 * 117.49458 * 214.97994 * 27 25 23 50 50 H 1.08997 * 117.49915 * 359.97385 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7038 1.4208 5 8 2.0549 1.0210 2.3426 6 7 3.1117 2.8510 1.6671 7 6 3.6564 3.7921 0.6688 8 6 4.8161 4.5513 1.3480 9 6 4.8406 4.0206 2.7838 10 6 5.9417 2.9678 2.9837 11 6 6.1917 3.0713 4.5118 12 7 6.0193 4.5016 4.8312 13 6 6.5647 5.1512 5.9062 14 1 6.3774 6.2047 6.0524 15 6 7.3588 4.4557 6.8076 16 7 7.5870 3.1717 6.6294 17 14 8.1035 5.3420 8.2737 18 1 7.1669 5.2697 9.4238 19 1 9.3895 4.6968 8.6412 20 1 8.3460 6.7641 7.9215 21 6 5.1612 5.1145 3.8011 22 6 3.4420 3.4220 2.9964 23 6 2.1388 -1.1673 0.0005 24 8 3.3516 -1.1673 0.0010 25 6 1.3853 -2.4723 0.0017 26 6 1.4585 -3.3293 1.2671 27 6 2.2073 -3.7627 0.0043 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6084 2.0283 -0.5139 32 1 3.1500 1.1382 -0.5138 33 1 2.8827 4.4951 0.3602 34 1 4.0285 3.2423 -0.1956 35 1 5.7588 4.3332 0.8461 36 1 4.6228 5.6240 1.3427 37 1 5.5866 1.9737 2.7118 38 1 6.8386 3.2283 2.4219 39 1 7.2048 2.7489 4.7525 40 1 5.4641 2.4708 5.0578 41 1 8.1422 2.6859 7.2591 42 1 5.6911 5.9329 3.3136 43 1 4.2410 5.4835 4.2539 44 1 2.7292 4.2003 3.2690 45 1 3.4688 2.6401 3.7554 46 1 0.4474 -2.4742 -0.5538 47 1 2.0514 -2.9488 2.0989 48 1 0.5689 -3.8951 1.5439 49 1 1.8101 -4.6136 -0.5491 50 1 3.2931 -3.6677 0.0048 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269731634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:24 Heat of formation + Delta-G solvation = 2.421373 kcal Electronic energy + Delta-G solvation = -29948.962846 eV Core-core repulsion = 25978.447205 eV Total energy + Delta-G solvation = -3970.515641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.64969 -39.88977 -38.28581 -36.42305 -35.70469 -35.44436 -32.68819 -30.73569 -29.57410 -29.08044 -28.03029 -26.87474 -25.58351 -24.38163 -23.36766 -22.64637 -22.31675 -20.33074 -19.66931 -18.98092 -18.63949 -17.78436 -17.22437 -16.77892 -16.33323 -15.91987 -15.53491 -15.12475 -14.75720 -14.51502 -14.29651 -14.19954 -13.99766 -13.71949 -13.24528 -13.13937 -12.87030 -12.74899 -12.54942 -12.39398 -12.27615 -11.95246 -11.76698 -11.72553 -11.64309 -11.28435 -11.11822 -10.89728 -10.84557 -10.75441 -10.74841 -10.20651 -10.09682 -10.03841 -9.96733 -9.91458 -9.68930 -9.43451 -8.87228 -8.60734 -8.56566 -6.79504 -5.60542 -3.02716 2.24780 2.56007 2.67562 3.16329 3.42645 3.47059 3.49508 3.64098 4.21753 4.43455 4.52498 4.53344 4.64495 4.71837 4.75932 4.83125 4.86128 4.97104 4.99295 5.09879 5.23052 5.29255 5.37961 5.40085 5.40833 5.47891 5.51992 5.54847 5.73816 5.85596 5.90856 5.91475 5.95542 6.01734 6.07574 6.12512 6.21107 6.37415 6.41713 6.59624 6.71761 6.78885 6.88427 7.06845 7.58380 7.62487 7.66242 7.91310 7.97007 8.22786 8.40321 9.25674 9.86635 10.52174 11.43137 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.002661 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.048727 B =10521.196442 C =11498.628482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.599 5.599 3 C 0.102 3.898 4 C 0.514 3.486 5 O -0.532 6.532 6 N -0.619 5.619 7 C 0.101 3.899 8 C -0.119 4.119 9 C -0.082 4.082 10 C -0.128 4.128 11 C 0.154 3.846 12 N -0.604 5.604 13 C -0.223 4.223 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.921 5.921 17 Si 0.914 3.086 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.152 3.848 22 C 0.126 3.874 23 C 0.549 3.451 24 O -0.533 6.533 25 C -0.194 4.194 26 C -0.149 4.149 27 C -0.149 4.149 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.011 0.989 41 H 0.252 0.748 42 H 0.029 0.971 43 H 0.023 0.977 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.124 0.876 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.103 0.897 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.026 -6.182 -19.606 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.332 5.332 3 C -0.024 4.024 4 C 0.301 3.699 5 O -0.408 6.408 6 N -0.354 5.354 7 C -0.022 4.022 8 C -0.157 4.157 9 C -0.084 4.084 10 C -0.167 4.167 11 C 0.029 3.971 12 N -0.331 5.331 13 C -0.351 4.351 14 H 0.095 0.905 15 C -0.207 4.207 16 N -0.569 5.569 17 Si 0.745 3.255 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.026 3.974 22 C 0.004 3.996 23 C 0.338 3.662 24 O -0.409 6.409 25 C -0.215 4.215 26 C -0.187 4.187 27 C -0.186 4.186 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.029 0.971 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.041 0.959 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.142 0.858 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.523 -6.688 -18.956 25.398 hybrid contribution 0.151 0.678 0.781 1.046 sum -15.373 -6.010 -18.175 24.551 Atomic orbital electron populations 1.21802 0.78723 1.03983 1.01416 1.47285 1.07184 1.04745 1.73958 1.21265 1.00059 0.86536 0.94585 1.20706 0.77866 0.79470 0.91897 1.90715 1.51217 1.52704 1.46190 1.48956 1.55609 1.21630 1.09189 1.22230 0.96220 0.91890 0.91908 1.22374 0.97975 0.99839 0.95503 1.21601 0.94937 0.97552 0.94285 1.22842 0.96170 0.96512 1.01175 1.21972 1.03138 0.84744 0.87259 1.44633 1.56307 1.05953 1.26158 1.19060 1.23372 0.93142 0.99555 0.90504 1.24800 1.00707 0.95933 0.99273 1.69820 1.42740 1.06971 1.37387 0.86081 0.78478 0.78426 0.82549 1.21677 1.21688 1.20731 1.21051 0.93928 0.93132 0.89302 1.22357 0.94689 0.97855 0.84711 1.19708 0.87291 0.84315 0.74882 1.90715 1.13903 1.87092 1.49154 1.22151 1.02537 0.90570 1.06235 1.22973 1.03213 1.00916 0.91549 1.22983 1.00190 0.94972 1.00477 0.92387 0.90491 0.90956 0.87616 0.86932 0.91494 0.91057 0.90340 0.90370 0.92456 0.91975 0.87781 0.97062 0.93742 0.95325 0.95927 0.91222 0.89505 0.85844 0.87907 0.87723 0.87913 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.01 59.85 0.60 1.20 16 2 N -0.60 -6.68 2.36 -182.96 -0.43 -7.11 16 3 C 0.10 1.13 4.96 -5.20 -0.03 1.10 16 4 C 0.51 7.82 7.96 -10.99 -0.09 7.73 16 5 O -0.53 -10.33 16.65 5.55 0.09 -10.24 16 6 N -0.62 -8.89 3.31 -170.03 -0.56 -9.45 16 7 C 0.10 1.07 6.77 -2.72 -0.02 1.05 16 8 C -0.12 -1.50 6.06 -25.97 -0.16 -1.65 16 9 C -0.08 -1.42 0.68 -153.92 -0.11 -1.52 16 10 C -0.13 -2.58 5.97 -25.24 -0.15 -2.73 16 11 C 0.15 3.90 5.77 -2.30 -0.01 3.88 16 12 N -0.60 -15.69 3.41 -170.42 -0.58 -16.27 16 13 C -0.22 -6.29 10.28 -15.06 -0.15 -6.45 16 14 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 15 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 16 N -0.92 -27.61 10.10 55.49 0.56 -27.05 16 17 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.15 3.12 6.43 -3.65 -0.02 3.09 16 22 C 0.13 2.12 5.88 -2.68 -0.02 2.11 16 23 C 0.55 7.25 7.46 -10.99 -0.08 7.16 16 24 O -0.53 -9.17 15.84 5.56 0.09 -9.09 16 25 C -0.19 -1.84 4.79 -91.77 -0.44 -2.28 16 26 C -0.15 -1.38 10.24 -26.69 -0.27 -1.65 16 27 C -0.15 -1.34 10.05 -26.69 -0.27 -1.61 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.51 6.64 -51.93 -0.34 0.17 16 30 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 31 H 0.11 0.76 8.07 -51.92 -0.42 0.34 16 32 H 0.11 1.28 7.19 -51.93 -0.37 0.91 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.64 7.55 -51.93 -0.39 0.24 16 35 H 0.08 0.97 7.62 -51.93 -0.40 0.57 16 36 H 0.08 0.87 7.81 -51.93 -0.41 0.47 16 37 H 0.06 1.16 8.00 -51.93 -0.42 0.74 16 38 H 0.06 1.21 7.80 -51.93 -0.40 0.81 16 39 H 0.10 2.97 5.89 -51.93 -0.31 2.67 16 40 H 0.01 0.31 8.10 -51.93 -0.42 -0.11 16 41 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.03 0.57 7.78 -51.93 -0.40 0.17 16 43 H 0.02 0.46 7.63 -51.93 -0.40 0.07 16 44 H 0.07 1.10 7.82 -51.93 -0.41 0.69 16 45 H 0.09 1.77 7.63 -51.93 -0.40 1.37 16 46 H 0.12 0.80 7.27 -51.93 -0.38 0.42 16 47 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.11 1.19 7.67 -51.93 -0.40 0.79 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -36.70 396.71 -9.53 -46.22 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -8.33 Total: 0.56 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -1.31 Total: 9.02 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -1.02 Total: -59.88 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.18 Total: -19.33 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.70 -9.53 -46.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269731634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.644 kcal (2) G-P(sol) polarization free energy of solvation -36.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds