Wall clock time and date at job start Tue Mar 31 2020 18:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 120.00241 * 2 1 4 4 C 1.50698 * 109.47361 * 89.99650 * 3 2 1 5 5 O 1.21285 * 119.99605 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00452 * 179.97438 * 4 3 2 7 7 C 1.47612 * 126.91710 * 359.97438 * 6 4 3 8 8 C 1.54352 * 107.05508 * 205.03496 * 7 6 4 9 9 C 1.53093 * 104.72526 * 357.72257 * 8 7 6 10 10 C 1.53646 * 111.77681 * 100.54324 * 9 8 7 11 11 C 1.55191 * 101.41198 * 155.68439 * 10 9 8 12 12 N 1.47559 * 105.00795 * 324.51946 * 11 10 9 13 13 C 1.36935 * 125.67428 * 203.81733 * 12 11 10 14 14 H 1.08001 * 119.99835 * 180.02562 * 13 12 11 15 15 C 1.38807 * 119.99949 * 0.04915 * 13 12 11 16 16 N 1.31623 * 120.00211 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00056 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47050 * 89.99522 * 17 15 13 19 19 H 1.48501 * 109.47046 * 209.99558 * 17 15 13 20 20 H 1.48498 * 109.47264 * 329.99930 * 17 15 13 21 21 C 1.47414 * 108.65163 * 23.85935 * 12 11 10 22 22 C 1.48404 * 126.92390 * 180.02562 * 6 4 3 23 23 C 1.34783 * 119.99547 * 179.97438 * 2 1 3 24 24 O 1.21279 * 119.99671 * 180.02562 * 23 2 1 25 25 C 1.50695 * 120.00016 * 359.97438 * 23 2 1 26 26 C 1.53004 * 117.49907 * 248.74678 * 25 23 2 27 27 C 1.53000 * 117.49593 * 180.08913 * 25 23 2 28 28 H 1.08998 * 109.47273 * 89.99573 * 1 2 3 29 29 H 1.08992 * 109.47527 * 210.00023 * 1 2 3 30 30 H 1.09000 * 109.47128 * 330.00242 * 1 2 3 31 31 H 1.09008 * 109.46933 * 329.99917 * 3 2 1 32 32 H 1.09000 * 109.47023 * 209.99788 * 3 2 1 33 33 H 1.09007 * 109.92088 * 85.68235 * 7 6 4 34 34 H 1.08999 * 109.92224 * 324.38709 * 7 6 4 35 35 H 1.09002 * 110.40824 * 116.56937 * 8 7 6 36 36 H 1.09002 * 110.40516 * 238.88326 * 8 7 6 37 37 H 1.09003 * 111.03482 * 273.71778 * 10 9 8 38 38 H 1.08994 * 111.03706 * 37.65072 * 10 9 8 39 39 H 1.08997 * 110.33103 * 205.63616 * 11 10 9 40 40 H 1.09002 * 110.41886 * 83.45092 * 11 10 9 41 41 H 0.96993 * 120.00075 * 179.97438 * 16 15 13 42 42 H 1.09005 * 109.98245 * 238.53565 * 21 12 11 43 43 H 1.08994 * 109.99064 * 117.22954 * 21 12 11 44 44 H 1.09001 * 110.68322 * 260.79365 * 22 6 4 45 45 H 1.09000 * 110.68339 * 23.96437 * 22 6 4 46 46 H 1.09001 * 115.55304 * 34.41980 * 25 23 2 47 47 H 1.09001 * 117.49416 * 0.02562 * 26 25 23 48 48 H 1.09001 * 117.49564 * 145.01986 * 26 25 23 49 49 H 1.09003 * 117.49458 * 214.97994 * 27 25 23 50 50 H 1.08997 * 117.49915 * 359.97385 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7038 1.4208 5 8 2.0549 1.0210 2.3426 6 7 3.1117 2.8510 1.6671 7 6 3.6564 3.7921 0.6688 8 6 4.8161 4.5513 1.3480 9 6 4.8406 4.0206 2.7838 10 6 5.9417 2.9678 2.9837 11 6 6.1917 3.0713 4.5118 12 7 6.0193 4.5016 4.8312 13 6 6.5647 5.1512 5.9062 14 1 6.3774 6.2047 6.0524 15 6 7.3588 4.4557 6.8076 16 7 7.5870 3.1717 6.6294 17 14 8.1035 5.3420 8.2737 18 1 7.1669 5.2697 9.4238 19 1 9.3895 4.6968 8.6412 20 1 8.3460 6.7641 7.9215 21 6 5.1612 5.1145 3.8011 22 6 3.4420 3.4220 2.9964 23 6 2.1388 -1.1673 0.0005 24 8 3.3516 -1.1673 0.0010 25 6 1.3853 -2.4723 0.0017 26 6 1.4585 -3.3293 1.2671 27 6 2.2073 -3.7627 0.0043 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6084 2.0283 -0.5139 32 1 3.1500 1.1382 -0.5138 33 1 2.8827 4.4951 0.3602 34 1 4.0285 3.2423 -0.1956 35 1 5.7588 4.3332 0.8461 36 1 4.6228 5.6240 1.3427 37 1 5.5866 1.9737 2.7118 38 1 6.8386 3.2283 2.4219 39 1 7.2048 2.7489 4.7525 40 1 5.4641 2.4708 5.0578 41 1 8.1422 2.6859 7.2591 42 1 5.6911 5.9329 3.3136 43 1 4.2410 5.4835 4.2539 44 1 2.7292 4.2003 3.2690 45 1 3.4688 2.6401 3.7554 46 1 0.4474 -2.4742 -0.5538 47 1 2.0514 -2.9488 2.0989 48 1 0.5689 -3.8951 1.5439 49 1 1.8101 -4.6136 -0.5491 50 1 3.2931 -3.6677 0.0048 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269731634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:23 Heat of formation + Delta-G solvation = -22.287224 kcal Electronic energy + Delta-G solvation = -29950.034291 eV Core-core repulsion = 25978.447205 eV Total energy + Delta-G solvation = -3971.587086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.72998 -41.04056 -39.62654 -37.35793 -37.10768 -36.45349 -34.52180 -32.31316 -30.84550 -30.49934 -29.46421 -27.65333 -27.19188 -25.95811 -24.35691 -23.57050 -23.36064 -22.27606 -20.70835 -20.27890 -19.75049 -18.88756 -18.63845 -18.18434 -17.39284 -17.11415 -16.76766 -16.54631 -16.12589 -15.74300 -15.67343 -15.34903 -15.15764 -14.98442 -14.63141 -14.20713 -14.04086 -13.85663 -13.61620 -13.60007 -13.55217 -13.30402 -13.05552 -12.97934 -12.84539 -12.81955 -12.63781 -12.48622 -12.43667 -12.03743 -11.85998 -11.58375 -11.56484 -11.47438 -11.46880 -11.28857 -11.11740 -10.98080 -10.77328 -9.78664 -9.72562 -8.92040 -7.78993 -5.24324 1.28129 1.44051 1.46927 1.53943 1.55725 1.72775 2.14518 2.48201 2.89294 3.28348 3.38800 3.47547 3.53923 3.67603 3.78057 3.78919 3.82117 3.92997 4.07248 4.16827 4.23699 4.24796 4.27186 4.33854 4.36240 4.54694 4.58668 4.69534 4.70247 4.72228 4.77896 4.84379 4.87893 4.92482 4.95869 4.98109 4.98849 5.05527 5.14525 5.18031 5.30237 5.37310 5.40479 5.44206 5.54157 5.76194 6.23230 6.25382 6.51995 7.01318 7.06457 7.10835 7.75183 8.40514 9.23560 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.002661 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.048727 B =10521.196442 C =11498.628482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.600 5.600 3 C 0.107 3.893 4 C 0.504 3.496 5 O -0.588 6.588 6 N -0.618 5.618 7 C 0.100 3.900 8 C -0.111 4.111 9 C -0.073 4.073 10 C -0.111 4.111 11 C 0.160 3.840 12 N -0.626 5.626 13 C -0.235 4.235 14 H 0.088 0.912 15 C -0.075 4.075 16 N -0.955 5.955 17 Si 0.984 3.016 18 H -0.289 1.289 19 H -0.295 1.295 20 H -0.263 1.263 21 C 0.148 3.852 22 C 0.129 3.871 23 C 0.534 3.466 24 O -0.588 6.588 25 C -0.192 4.192 26 C -0.153 4.153 27 C -0.147 4.147 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.157 0.843 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.068 0.932 40 H -0.031 1.031 41 H 0.245 0.755 42 H 0.048 0.952 43 H 0.028 0.972 44 H 0.085 0.915 45 H 0.036 0.964 46 H 0.164 0.836 47 H 0.065 0.935 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.330 -4.306 -22.910 29.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.331 5.331 3 C -0.019 4.019 4 C 0.293 3.707 5 O -0.468 6.468 6 N -0.352 5.352 7 C -0.021 4.021 8 C -0.149 4.149 9 C -0.075 4.075 10 C -0.150 4.150 11 C 0.034 3.966 12 N -0.352 5.352 13 C -0.364 4.364 14 H 0.106 0.894 15 C -0.266 4.266 16 N -0.605 5.605 17 Si 0.812 3.188 18 H -0.216 1.216 19 H -0.222 1.222 20 H -0.187 1.187 21 C 0.023 3.977 22 C 0.006 3.994 23 C 0.324 3.676 24 O -0.469 6.469 25 C -0.212 4.212 26 C -0.190 4.190 27 C -0.185 4.185 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.174 0.826 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.086 0.914 40 H -0.013 1.013 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.046 0.954 44 H 0.103 0.897 45 H 0.055 0.945 46 H 0.181 0.819 47 H 0.084 0.916 48 H 0.155 0.845 49 H 0.155 0.845 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.876 -4.747 -22.319 28.987 hybrid contribution 0.838 0.117 1.863 2.046 sum -17.039 -4.630 -20.455 27.022 Atomic orbital electron populations 1.22096 0.76193 1.04362 1.03845 1.47523 1.08855 1.04245 1.72430 1.21420 1.01186 0.87761 0.91551 1.21629 0.76946 0.78857 0.93245 1.90690 1.53615 1.54320 1.48212 1.49050 1.55196 1.22074 1.08879 1.22548 0.96543 0.91856 0.91147 1.22401 0.99515 1.01533 0.91487 1.21485 0.93572 0.95439 0.96996 1.22598 0.97985 0.97404 0.96973 1.21648 0.99656 0.84620 0.90632 1.44939 1.57192 1.06123 1.26967 1.19530 1.22875 0.93795 1.00228 0.89398 1.25735 1.01761 0.96721 1.02426 1.70111 1.43591 1.08603 1.38185 0.84993 0.77011 0.78046 0.78774 1.21636 1.22199 1.18718 1.21296 0.93257 0.94347 0.88789 1.22119 0.95199 0.96745 0.85372 1.20468 0.87019 0.86111 0.74018 1.90679 1.16334 1.88027 1.51847 1.22316 1.03608 0.88760 1.06524 1.22987 1.04064 1.01403 0.90570 1.23037 0.98713 0.96102 1.00605 0.88722 0.90020 0.90871 0.82603 0.87159 0.87446 0.88547 0.89531 0.87699 0.93326 0.90862 0.91436 1.01293 0.94562 0.93431 0.95391 0.89677 0.94547 0.81858 0.91637 0.84492 0.84471 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.01 127.77 1.28 2.15 16 2 N -0.60 -12.38 2.36 -851.15 -2.01 -14.39 16 3 C 0.11 2.12 4.96 85.63 0.43 2.55 16 4 C 0.50 15.11 7.96 87.66 0.70 15.80 16 5 O -0.59 -23.84 16.65 -3.04 -0.05 -23.89 16 6 N -0.62 -16.84 3.31 -810.25 -2.68 -19.52 16 7 C 0.10 1.69 6.77 86.63 0.59 2.28 16 8 C -0.11 -2.37 6.06 31.08 0.19 -2.19 16 9 C -0.07 -2.47 0.68 -51.80 -0.04 -2.50 16 10 C -0.11 -4.61 5.97 31.56 0.19 -4.42 16 11 C 0.16 8.67 5.77 86.93 0.50 9.18 16 12 N -0.63 -33.44 3.41 -693.07 -2.36 -35.81 16 13 C -0.24 -13.54 10.28 84.03 0.86 -12.67 16 14 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 15 C -0.07 -4.40 5.49 84.86 0.47 -3.94 16 16 N -0.95 -60.41 10.10 21.65 0.22 -60.19 16 17 Si 0.98 47.20 29.55 68.60 2.03 49.22 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 19 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 C 0.15 5.94 6.43 86.13 0.55 6.50 16 22 C 0.13 4.38 5.88 86.22 0.51 4.89 16 23 C 0.53 14.00 7.46 87.65 0.65 14.66 16 24 O -0.59 -21.20 15.84 -3.02 -0.05 -21.25 16 25 C -0.19 -3.38 4.79 -11.54 -0.06 -3.44 16 26 C -0.15 -2.80 10.24 30.62 0.31 -2.49 16 27 C -0.15 -2.56 10.05 30.62 0.31 -2.26 16 28 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.08 0.86 6.64 -2.39 -0.02 0.85 16 30 H 0.07 0.85 8.07 -2.39 -0.02 0.83 16 31 H 0.16 1.47 8.07 -2.38 -0.02 1.45 16 32 H 0.11 2.30 7.19 -2.39 -0.02 2.29 16 33 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.10 1.23 7.55 -2.39 -0.02 1.21 16 35 H 0.09 1.77 7.62 -2.39 -0.02 1.75 16 36 H 0.10 1.77 7.81 -2.39 -0.02 1.75 16 37 H 0.05 2.08 8.00 -2.39 -0.02 2.06 16 38 H 0.07 2.86 7.80 -2.39 -0.02 2.84 16 39 H 0.07 4.16 5.89 -2.39 -0.01 4.14 16 40 H -0.03 -1.88 8.10 -2.39 -0.02 -1.90 16 41 H 0.24 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.05 1.76 7.78 -2.38 -0.02 1.74 16 43 H 0.03 1.11 7.63 -2.39 -0.02 1.09 16 44 H 0.09 2.61 7.82 -2.39 -0.02 2.59 16 45 H 0.04 1.60 7.63 -2.39 -0.02 1.58 16 46 H 0.16 1.50 7.27 -2.39 -0.02 1.48 16 47 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.08 1.85 7.67 -2.39 -0.02 1.83 16 Total: -1.00 -90.08 396.71 3.46 -86.63 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.92 Total: 15.10 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 7.44 Total: 24.09 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -6.84 Total: -129.90 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -0.10 Total: -45.14 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.22 kcal Total: -90.08 3.46 -86.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269731634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.340 kcal (2) G-P(sol) polarization free energy of solvation -90.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds