Wall clock time and date at job start Tue Mar 31 2020 18:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 120.00276 * 2 1 4 4 C 1.50705 * 109.46526 * 90.00620 * 3 2 1 5 5 O 1.21275 * 120.00338 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99509 * 180.02562 * 4 3 2 7 7 C 1.48249 * 127.00423 * 359.97438 * 6 4 3 8 8 C 1.55263 * 103.44446 * 141.54289 * 7 6 4 9 9 C 1.53224 * 102.46375 * 36.19179 * 8 7 6 10 10 C 1.53712 * 111.54295 * 216.62257 * 9 8 7 11 11 C 1.54586 * 102.78870 * 206.03431 * 10 9 8 12 12 N 1.47135 * 107.32391 * 20.88617 * 11 10 9 13 13 C 1.36945 * 125.60369 * 180.92361 * 12 11 10 14 14 H 1.08000 * 119.99441 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00031 * 0.02562 * 13 12 11 16 16 N 1.31619 * 120.00283 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99811 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46722 * 90.00437 * 17 15 13 19 19 H 1.48497 * 109.47157 * 210.00127 * 17 15 13 20 20 H 1.48494 * 109.47346 * 330.00290 * 17 15 13 21 21 C 1.47699 * 108.78909 * 1.18356 * 12 11 10 22 22 C 1.47886 * 127.00231 * 180.02562 * 6 4 3 23 23 C 1.34776 * 119.99834 * 180.02562 * 2 1 3 24 24 O 1.21281 * 120.00249 * 179.97438 * 23 2 1 25 25 C 1.50700 * 119.99838 * 359.97438 * 23 2 1 26 26 C 1.53003 * 117.50113 * 248.62643 * 25 23 2 27 27 C 1.53004 * 60.00304 * 252.51367 * 26 25 23 28 28 H 1.08998 * 109.47253 * 89.99379 * 1 2 3 29 29 H 1.09000 * 109.47170 * 209.99703 * 1 2 3 30 30 H 1.09010 * 109.46704 * 329.99341 * 1 2 3 31 31 H 1.08998 * 109.47315 * 330.00708 * 3 2 1 32 32 H 1.08994 * 109.47059 * 210.00390 * 3 2 1 33 33 H 1.08995 * 110.62507 * 260.02472 * 7 6 4 34 34 H 1.08995 * 110.62758 * 22.89368 * 7 6 4 35 35 H 1.09001 * 110.80780 * 277.94794 * 8 7 6 36 36 H 1.08998 * 110.80843 * 154.43830 * 8 7 6 37 37 H 1.09001 * 110.75225 * 87.70760 * 10 9 8 38 38 H 1.09001 * 110.75197 * 324.35713 * 10 9 8 39 39 H 1.09001 * 109.86926 * 261.45246 * 11 10 9 40 40 H 1.08996 * 109.99453 * 140.38785 * 11 10 9 41 41 H 0.96998 * 120.00243 * 179.97438 * 16 15 13 42 42 H 1.08997 * 110.38940 * 95.94688 * 21 12 11 43 43 H 1.08997 * 110.39285 * 218.33657 * 21 12 11 44 44 H 1.09003 * 110.04899 * 85.89361 * 22 6 4 45 45 H 1.09001 * 110.08941 * 324.44751 * 22 6 4 46 46 H 1.08994 * 115.55337 * 34.33942 * 25 23 2 47 47 H 1.09005 * 117.49949 * 359.97438 * 26 25 23 48 48 H 1.08992 * 117.50074 * 145.02267 * 26 25 23 49 49 H 1.08995 * 117.49723 * 252.51318 * 27 26 25 50 50 H 1.08991 * 117.49992 * 107.48262 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7035 1.4209 5 8 2.0552 1.0207 2.3427 6 7 3.1110 2.8513 1.6672 7 6 3.6577 3.7985 0.6663 8 6 3.3762 5.1901 1.2947 9 6 3.5906 4.9276 2.7890 10 6 2.5970 5.7237 3.6502 11 6 3.3529 5.8788 4.9897 12 7 4.7842 5.6839 4.7102 13 6 5.7904 5.7237 5.6383 14 1 6.8142 5.5680 5.3317 15 6 5.4944 5.9642 6.9730 16 7 4.2467 6.1534 7.3467 17 14 6.8669 6.0177 8.2391 18 1 7.3757 7.4077 8.3590 19 1 6.3451 5.5665 9.5541 20 1 7.9708 5.1217 7.8107 21 6 4.9581 5.4446 3.2632 22 6 3.4412 3.4219 2.9910 23 6 2.1389 -1.1672 -0.0005 24 8 3.3517 -1.1673 -0.0010 25 6 1.3853 -2.4723 -0.0005 26 6 1.4608 -3.3317 1.2631 27 6 2.2074 -3.7628 -0.0010 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 1.6085 2.0284 -0.5137 32 1 3.1499 1.1383 -0.5139 33 1 4.7291 3.6451 0.5376 34 1 3.1386 3.6925 -0.2862 35 1 2.3503 5.5026 1.0998 36 1 4.0847 5.9318 0.9262 37 1 1.6727 5.1635 3.7910 38 1 2.3952 6.6983 3.2057 39 1 3.0080 5.1264 5.6990 40 1 3.1874 6.8759 5.3978 41 1 4.0398 6.3211 8.2794 42 1 5.2136 6.3732 2.7527 43 1 5.7279 4.6921 3.0924 44 1 4.3766 2.9990 3.3575 45 1 2.6369 3.2178 3.6978 46 1 0.4468 -2.4733 -0.5549 47 1 2.0559 -2.9534 2.0943 48 1 0.5719 -3.8981 1.5403 49 1 1.8095 -4.6127 -0.5553 50 1 3.2932 -3.6677 -0.0013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269731635.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:27 Heat of formation + Delta-G solvation = 1.216160 kcal Electronic energy + Delta-G solvation = -29773.788357 eV Core-core repulsion = 25803.220454 eV Total energy + Delta-G solvation = -3970.567903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.65295 -39.88743 -38.33012 -36.46075 -35.71948 -35.45426 -32.71101 -30.69798 -29.57536 -29.20727 -27.87595 -26.87649 -25.59743 -24.47989 -23.38319 -22.68048 -22.37796 -20.21954 -19.76918 -18.94892 -18.72890 -17.79493 -17.28006 -16.71892 -16.41146 -15.89683 -15.60609 -15.05428 -14.76995 -14.60261 -14.35577 -14.06449 -13.86307 -13.60478 -13.38677 -13.20808 -12.93018 -12.86991 -12.57995 -12.37258 -12.18015 -12.00215 -11.90714 -11.80575 -11.40782 -11.36666 -11.24609 -10.88474 -10.84688 -10.78642 -10.77196 -10.17577 -10.11890 -10.05019 -9.96483 -9.91546 -9.77143 -9.60817 -8.88474 -8.59439 -8.51869 -6.81141 -5.68714 -3.02278 2.22071 2.54345 2.68570 3.17062 3.42156 3.47338 3.49329 3.60729 4.19381 4.43150 4.49827 4.51833 4.61283 4.69951 4.73980 4.82291 4.83887 4.95443 4.99476 5.08762 5.22121 5.31649 5.34190 5.41234 5.41724 5.45359 5.49540 5.54625 5.69546 5.80862 5.84030 5.86566 5.94555 6.02384 6.05171 6.19398 6.23664 6.35016 6.38393 6.51429 6.61617 6.71061 6.82992 7.04901 7.58020 7.64119 7.64291 7.85214 7.93791 8.23871 8.27908 9.24258 9.84491 10.50122 11.42916 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.002556 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.528582 B =10952.573775 C =11762.424086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.598 5.598 3 C 0.102 3.898 4 C 0.513 3.487 5 O -0.534 6.534 6 N -0.621 5.621 7 C 0.098 3.902 8 C -0.118 4.118 9 C -0.085 4.085 10 C -0.131 4.131 11 C 0.177 3.823 12 N -0.605 5.605 13 C -0.228 4.228 14 H 0.077 0.923 15 C -0.008 4.008 16 N -0.922 5.922 17 Si 0.911 3.089 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.150 3.850 22 C 0.133 3.867 23 C 0.550 3.450 24 O -0.536 6.536 25 C -0.194 4.194 26 C -0.149 4.149 27 C -0.149 4.149 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.252 0.748 42 H 0.023 0.977 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.124 0.876 47 H 0.102 0.898 48 H 0.105 0.895 49 H 0.103 0.897 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.398 -11.545 -20.833 25.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.331 5.331 3 C -0.025 4.025 4 C 0.299 3.701 5 O -0.410 6.410 6 N -0.356 5.356 7 C -0.025 4.025 8 C -0.157 4.157 9 C -0.087 4.087 10 C -0.169 4.169 11 C 0.053 3.947 12 N -0.332 5.332 13 C -0.356 4.356 14 H 0.095 0.905 15 C -0.204 4.204 16 N -0.569 5.569 17 Si 0.742 3.258 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.023 3.977 22 C 0.011 3.989 23 C 0.339 3.661 24 O -0.412 6.412 25 C -0.215 4.215 26 C -0.186 4.186 27 C -0.186 4.186 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.057 0.943 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.142 0.858 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.006 -11.993 -20.107 25.461 hybrid contribution 0.546 0.332 0.798 1.023 sum -9.459 -11.661 -19.309 24.460 Atomic orbital electron populations 1.21820 0.78636 1.04072 1.01467 1.47287 1.07247 1.04744 1.73781 1.21271 1.00052 0.86500 0.94632 1.20695 0.77793 0.79715 0.91865 1.90710 1.51285 1.52805 1.46199 1.49070 1.55511 1.21667 1.09340 1.22677 0.99237 0.88915 0.91706 1.22572 1.02337 0.95862 0.94904 1.21661 0.98997 0.93925 0.94107 1.22809 0.97223 0.98455 0.98456 1.21218 0.82438 1.00629 0.90458 1.44579 1.03252 1.84285 1.01078 1.19046 0.87359 1.41969 0.87247 0.90482 1.24795 0.96520 1.02051 0.97071 1.69963 1.16080 1.55073 1.15819 0.86129 0.80924 0.77628 0.81149 1.21647 1.21701 1.20698 1.21502 0.92620 0.96721 0.86818 1.21866 1.01566 0.91713 0.83760 1.19699 0.87260 0.84330 0.74833 1.90700 1.13948 1.87145 1.49432 1.22155 1.02553 0.90524 1.06246 1.22958 1.03230 1.00914 0.91537 1.22969 1.00138 0.95037 1.00499 0.92335 0.90483 0.90839 0.87542 0.86978 0.90615 0.90642 0.90832 0.89711 0.92158 0.92098 0.93623 0.93921 0.93784 0.95903 0.94265 0.91034 0.90497 0.85787 0.87969 0.87688 0.87897 0.87431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.01 59.85 0.60 1.21 16 2 N -0.60 -6.61 2.36 -182.95 -0.43 -7.04 16 3 C 0.10 1.12 4.82 -5.19 -0.03 1.09 16 4 C 0.51 7.86 7.96 -10.98 -0.09 7.77 16 5 O -0.53 -10.44 16.78 5.56 0.09 -10.34 16 6 N -0.62 -9.10 3.31 -169.95 -0.56 -9.66 16 7 C 0.10 1.05 6.96 -1.88 -0.01 1.04 16 8 C -0.12 -1.40 6.20 -25.42 -0.16 -1.56 16 9 C -0.09 -1.41 0.74 -153.84 -0.11 -1.52 16 10 C -0.13 -2.39 5.74 -25.53 -0.15 -2.53 16 11 C 0.18 4.29 5.34 -2.86 -0.02 4.27 16 12 N -0.61 -15.33 3.41 -170.36 -0.58 -15.91 16 13 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 14 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 15 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 16 N -0.92 -27.41 10.30 55.49 0.57 -26.84 16 17 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.15 2.98 6.12 -3.03 -0.02 2.96 16 22 C 0.13 2.35 6.28 -3.46 -0.02 2.33 16 23 C 0.55 7.08 7.46 -10.99 -0.08 7.00 16 24 O -0.54 -8.95 15.84 5.56 0.09 -8.86 16 25 C -0.19 -1.78 4.80 -91.76 -0.44 -2.22 16 26 C -0.15 -1.32 10.23 -26.73 -0.27 -1.60 16 27 C -0.15 -1.27 10.04 -26.72 -0.27 -1.54 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.51 6.64 -51.93 -0.34 0.17 16 30 H 0.07 0.55 8.07 -51.92 -0.42 0.13 16 31 H 0.11 0.77 7.83 -51.93 -0.41 0.37 16 32 H 0.11 1.24 7.42 -51.93 -0.39 0.85 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.56 7.24 -51.93 -0.38 0.19 16 35 H 0.07 0.80 7.93 -51.93 -0.41 0.39 16 36 H 0.08 0.91 7.60 -51.93 -0.39 0.52 16 37 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 38 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 39 H 0.05 1.24 7.39 -51.93 -0.38 0.86 16 40 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.02 0.45 7.75 -51.93 -0.40 0.04 16 43 H 0.04 0.78 7.74 -51.93 -0.40 0.38 16 44 H 0.07 1.42 7.53 -51.93 -0.39 1.03 16 45 H 0.08 1.53 7.43 -51.93 -0.39 1.14 16 46 H 0.12 0.78 7.26 -51.93 -0.38 0.40 16 47 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.11 1.12 7.67 -51.93 -0.40 0.72 16 LS Contribution 396.95 15.07 5.98 5.98 Total: -1.00 -36.58 396.95 -9.52 -46.10 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -8.35 Total: -0.70 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -1.32 Total: 9.83 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -1.00 Total: -59.46 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.18 Total: -19.20 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.58 -9.52 -46.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269731635.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.318 kcal (2) G-P(sol) polarization free energy of solvation -36.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds