Wall clock time and date at job start Tue Mar 31 2020 18:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 120.00276 * 2 1 4 4 C 1.50705 * 109.46526 * 90.00620 * 3 2 1 5 5 O 1.21275 * 120.00338 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99509 * 180.02562 * 4 3 2 7 7 C 1.48249 * 127.00423 * 359.97438 * 6 4 3 8 8 C 1.55263 * 103.44446 * 141.54289 * 7 6 4 9 9 C 1.53224 * 102.46375 * 36.19179 * 8 7 6 10 10 C 1.53712 * 111.54295 * 216.62257 * 9 8 7 11 11 C 1.54586 * 102.78870 * 206.03431 * 10 9 8 12 12 N 1.47135 * 107.32391 * 20.88617 * 11 10 9 13 13 C 1.36945 * 125.60369 * 180.92361 * 12 11 10 14 14 H 1.08000 * 119.99441 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00031 * 0.02562 * 13 12 11 16 16 N 1.31619 * 120.00283 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99811 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46722 * 90.00437 * 17 15 13 19 19 H 1.48497 * 109.47157 * 210.00127 * 17 15 13 20 20 H 1.48494 * 109.47346 * 330.00290 * 17 15 13 21 21 C 1.47699 * 108.78909 * 1.18356 * 12 11 10 22 22 C 1.47886 * 127.00231 * 180.02562 * 6 4 3 23 23 C 1.34776 * 119.99834 * 180.02562 * 2 1 3 24 24 O 1.21281 * 120.00249 * 179.97438 * 23 2 1 25 25 C 1.50700 * 119.99838 * 359.97438 * 23 2 1 26 26 C 1.53003 * 117.50113 * 248.62643 * 25 23 2 27 27 C 1.53004 * 60.00304 * 252.51367 * 26 25 23 28 28 H 1.08998 * 109.47253 * 89.99379 * 1 2 3 29 29 H 1.09000 * 109.47170 * 209.99703 * 1 2 3 30 30 H 1.09010 * 109.46704 * 329.99341 * 1 2 3 31 31 H 1.08998 * 109.47315 * 330.00708 * 3 2 1 32 32 H 1.08994 * 109.47059 * 210.00390 * 3 2 1 33 33 H 1.08995 * 110.62507 * 260.02472 * 7 6 4 34 34 H 1.08995 * 110.62758 * 22.89368 * 7 6 4 35 35 H 1.09001 * 110.80780 * 277.94794 * 8 7 6 36 36 H 1.08998 * 110.80843 * 154.43830 * 8 7 6 37 37 H 1.09001 * 110.75225 * 87.70760 * 10 9 8 38 38 H 1.09001 * 110.75197 * 324.35713 * 10 9 8 39 39 H 1.09001 * 109.86926 * 261.45246 * 11 10 9 40 40 H 1.08996 * 109.99453 * 140.38785 * 11 10 9 41 41 H 0.96998 * 120.00243 * 179.97438 * 16 15 13 42 42 H 1.08997 * 110.38940 * 95.94688 * 21 12 11 43 43 H 1.08997 * 110.39285 * 218.33657 * 21 12 11 44 44 H 1.09003 * 110.04899 * 85.89361 * 22 6 4 45 45 H 1.09001 * 110.08941 * 324.44751 * 22 6 4 46 46 H 1.08994 * 115.55337 * 34.33942 * 25 23 2 47 47 H 1.09005 * 117.49949 * 359.97438 * 26 25 23 48 48 H 1.08992 * 117.50074 * 145.02267 * 26 25 23 49 49 H 1.08995 * 117.49723 * 252.51318 * 27 26 25 50 50 H 1.08991 * 117.49992 * 107.48262 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7035 1.4209 5 8 2.0552 1.0207 2.3427 6 7 3.1110 2.8513 1.6672 7 6 3.6577 3.7985 0.6663 8 6 3.3762 5.1901 1.2947 9 6 3.5906 4.9276 2.7890 10 6 2.5970 5.7237 3.6502 11 6 3.3529 5.8788 4.9897 12 7 4.7842 5.6839 4.7102 13 6 5.7904 5.7237 5.6383 14 1 6.8142 5.5680 5.3317 15 6 5.4944 5.9642 6.9730 16 7 4.2467 6.1534 7.3467 17 14 6.8669 6.0177 8.2391 18 1 7.3757 7.4077 8.3590 19 1 6.3451 5.5665 9.5541 20 1 7.9708 5.1217 7.8107 21 6 4.9581 5.4446 3.2632 22 6 3.4412 3.4219 2.9910 23 6 2.1389 -1.1672 -0.0005 24 8 3.3517 -1.1673 -0.0010 25 6 1.3853 -2.4723 -0.0005 26 6 1.4608 -3.3317 1.2631 27 6 2.2074 -3.7628 -0.0010 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 1.6085 2.0284 -0.5137 32 1 3.1499 1.1383 -0.5139 33 1 4.7291 3.6451 0.5376 34 1 3.1386 3.6925 -0.2862 35 1 2.3503 5.5026 1.0998 36 1 4.0847 5.9318 0.9262 37 1 1.6727 5.1635 3.7910 38 1 2.3952 6.6983 3.2057 39 1 3.0080 5.1264 5.6990 40 1 3.1874 6.8759 5.3978 41 1 4.0398 6.3211 8.2794 42 1 5.2136 6.3732 2.7527 43 1 5.7279 4.6921 3.0924 44 1 4.3766 2.9990 3.3575 45 1 2.6369 3.2178 3.6978 46 1 0.4468 -2.4733 -0.5549 47 1 2.0559 -2.9534 2.0943 48 1 0.5719 -3.8981 1.5403 49 1 1.8095 -4.6127 -0.5553 50 1 3.2932 -3.6677 -0.0013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269731635.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:26 Heat of formation + Delta-G solvation = -23.437118 kcal Electronic energy + Delta-G solvation = -29774.857404 eV Core-core repulsion = 25803.220454 eV Total energy + Delta-G solvation = -3971.636949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.71378 -41.02907 -39.65582 -37.34645 -37.09663 -36.45396 -34.54019 -32.27626 -30.85878 -30.54508 -29.25811 -27.64971 -27.24613 -25.97714 -24.33785 -23.64872 -23.35544 -22.11395 -20.77690 -20.23517 -19.79305 -18.86673 -18.61515 -18.19126 -17.44116 -17.06164 -16.72580 -16.58183 -15.98192 -15.95622 -15.61623 -15.31151 -15.11988 -14.92481 -14.69912 -14.41733 -13.90175 -13.84780 -13.64760 -13.59023 -13.36977 -13.27461 -13.04597 -12.98063 -12.88355 -12.82152 -12.58332 -12.48255 -12.44732 -12.06306 -11.84787 -11.60445 -11.56393 -11.47147 -11.34270 -11.33164 -11.19725 -10.98253 -10.72185 -9.78755 -9.77835 -8.90330 -7.86873 -5.21860 1.27910 1.41959 1.44409 1.52702 1.52817 1.72298 2.13663 2.47175 2.89565 3.29587 3.41492 3.47427 3.52751 3.61882 3.78287 3.82185 3.85614 3.93624 4.07912 4.15643 4.23345 4.24100 4.27963 4.31591 4.44639 4.57960 4.61805 4.69731 4.71878 4.74112 4.76987 4.84743 4.91006 4.93012 4.95625 4.98861 4.99308 5.09050 5.16757 5.18445 5.28238 5.34007 5.41730 5.45072 5.66049 5.75604 6.18212 6.23055 6.51553 7.00206 7.08610 7.09653 7.76628 8.40611 9.23489 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.002556 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.528582 B =10952.573775 C =11762.424086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.600 5.600 3 C 0.108 3.892 4 C 0.504 3.496 5 O -0.589 6.589 6 N -0.619 5.619 7 C 0.096 3.904 8 C -0.106 4.106 9 C -0.073 4.073 10 C -0.114 4.114 11 C 0.185 3.815 12 N -0.629 5.629 13 C -0.240 4.240 14 H 0.082 0.918 15 C -0.070 4.070 16 N -0.953 5.953 17 Si 0.977 3.023 18 H -0.282 1.282 19 H -0.297 1.297 20 H -0.271 1.271 21 C 0.146 3.854 22 C 0.138 3.862 23 C 0.535 3.465 24 O -0.588 6.588 25 C -0.193 4.193 26 C -0.153 4.153 27 C -0.146 4.146 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.157 0.843 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.088 0.912 39 H -0.002 1.002 40 H 0.008 0.992 41 H 0.245 0.755 42 H 0.044 0.956 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.044 0.956 46 H 0.163 0.837 47 H 0.066 0.934 48 H 0.136 0.864 49 H 0.136 0.864 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.651 -11.429 -24.901 29.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.330 5.330 3 C -0.019 4.019 4 C 0.293 3.707 5 O -0.469 6.469 6 N -0.353 5.353 7 C -0.025 4.025 8 C -0.144 4.144 9 C -0.075 4.075 10 C -0.152 4.152 11 C 0.060 3.940 12 N -0.355 5.355 13 C -0.369 4.369 14 H 0.100 0.900 15 C -0.262 4.262 16 N -0.602 5.602 17 Si 0.805 3.195 18 H -0.209 1.209 19 H -0.224 1.224 20 H -0.196 1.196 21 C 0.021 3.979 22 C 0.014 3.986 23 C 0.325 3.675 24 O -0.469 6.469 25 C -0.214 4.214 26 C -0.190 4.190 27 C -0.183 4.183 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.174 0.826 32 H 0.132 0.868 33 H 0.098 0.902 34 H 0.143 0.857 35 H 0.115 0.885 36 H 0.126 0.874 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.017 0.983 40 H 0.026 0.974 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.180 0.820 47 H 0.085 0.915 48 H 0.154 0.846 49 H 0.155 0.845 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.269 -11.850 -24.251 29.249 hybrid contribution 0.963 0.278 2.094 2.322 sum -10.306 -11.573 -22.157 27.038 Atomic orbital electron populations 1.22102 0.76250 1.04333 1.03871 1.47527 1.08835 1.04291 1.72370 1.21430 1.01348 0.87754 0.91346 1.21699 0.76653 0.79002 0.93364 1.90683 1.53556 1.54415 1.48274 1.49173 1.55159 1.22196 1.08791 1.22997 1.00160 0.86912 0.92450 1.22603 1.04502 0.97109 0.90200 1.21523 0.96105 0.92225 0.97609 1.22656 0.96956 1.00368 0.95264 1.20944 0.83064 0.96988 0.92991 1.44899 1.03150 1.84178 1.03281 1.19460 0.88382 1.40804 0.88225 0.90015 1.25657 0.98777 1.02645 0.99152 1.70201 1.17980 1.56482 1.15541 0.85100 0.78374 0.77878 0.78144 1.20850 1.22352 1.19558 1.21745 0.94658 0.97493 0.84009 1.21526 0.98646 0.93050 0.85337 1.20446 0.87015 0.86046 0.73971 1.90665 1.16247 1.88031 1.51958 1.22317 1.03633 0.88788 1.06625 1.22978 1.04068 1.01352 0.90619 1.23027 0.98761 0.96013 1.00526 0.88656 0.90001 0.91004 0.82589 0.86828 0.90159 0.85738 0.88502 0.87413 0.91446 0.89308 0.98334 0.97393 0.94550 0.93790 0.94587 0.94450 0.93776 0.81980 0.91488 0.84616 0.84548 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.01 127.77 1.28 2.14 16 2 N -0.60 -12.02 2.36 -851.11 -2.01 -14.03 16 3 C 0.11 2.07 4.82 85.63 0.41 2.48 16 4 C 0.50 15.09 7.96 87.66 0.70 15.79 16 5 O -0.59 -23.86 16.78 -3.02 -0.05 -23.92 16 6 N -0.62 -17.39 3.31 -809.98 -2.68 -20.07 16 7 C 0.10 1.67 6.96 86.82 0.60 2.28 16 8 C -0.11 -2.04 6.20 31.45 0.19 -1.84 16 9 C -0.07 -2.33 0.74 -51.75 -0.04 -2.37 16 10 C -0.11 -4.10 5.74 31.37 0.18 -3.92 16 11 C 0.19 9.42 5.34 86.80 0.46 9.88 16 12 N -0.63 -32.86 3.41 -692.89 -2.36 -35.22 16 13 C -0.24 -13.84 10.28 84.03 0.86 -12.97 16 14 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 15 C -0.07 -4.12 5.49 84.86 0.47 -3.65 16 16 N -0.95 -59.65 10.30 21.65 0.22 -59.43 16 17 Si 0.98 47.60 29.55 68.60 2.03 49.63 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 C 0.15 5.72 6.12 86.38 0.53 6.25 16 22 C 0.14 5.03 6.28 86.00 0.54 5.57 16 23 C 0.53 13.44 7.46 87.66 0.65 14.09 16 24 O -0.59 -20.20 15.84 -3.03 -0.05 -20.24 16 25 C -0.19 -3.22 4.80 -11.54 -0.06 -3.27 16 26 C -0.15 -2.62 10.23 30.60 0.31 -2.31 16 27 C -0.15 -2.35 10.04 30.60 0.31 -2.04 16 28 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.08 0.86 6.64 -2.39 -0.02 0.84 16 30 H 0.07 0.87 8.07 -2.38 -0.02 0.85 16 31 H 0.16 1.41 7.83 -2.39 -0.02 1.39 16 32 H 0.11 2.23 7.42 -2.39 -0.02 2.21 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.12 1.05 7.24 -2.39 -0.02 1.03 16 35 H 0.10 1.53 7.93 -2.39 -0.02 1.51 16 36 H 0.11 1.70 7.60 -2.39 -0.02 1.68 16 37 H 0.07 2.33 7.72 -2.39 -0.02 2.32 16 38 H 0.09 2.73 8.04 -2.39 -0.02 2.71 16 39 H 0.00 -0.10 7.39 -2.39 -0.02 -0.11 16 40 H 0.01 0.45 7.49 -2.39 -0.02 0.43 16 41 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 42 H 0.04 1.59 7.75 -2.39 -0.02 1.57 16 43 H 0.04 1.43 7.74 -2.39 -0.02 1.41 16 44 H 0.04 1.59 7.53 -2.39 -0.02 1.57 16 45 H 0.04 1.87 7.43 -2.39 -0.02 1.86 16 46 H 0.16 1.39 7.26 -2.39 -0.02 1.38 16 47 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 48 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.08 1.74 7.67 -2.39 -0.02 1.73 16 Total: -1.00 -89.93 396.95 3.43 -86.50 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.92 Total: 10.68 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 7.41 Total: 26.11 kcal Atomic # 7 Polarization: -121.92 SS G_CDS: -6.83 Total: -128.75 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.10 Total: -44.16 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -89.93 3.43 -86.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269731635.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.059 kcal (2) G-P(sol) polarization free energy of solvation -89.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds