Wall clock time and date at job start Tue Mar 31 2020 18:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 119.99590 * 2 1 4 4 O 1.21284 * 120.00106 * 5.00238 * 3 2 1 5 5 C 1.50704 * 120.00104 * 185.00317 * 3 2 1 6 6 C 1.50697 * 115.54760 * 55.00744 * 5 3 2 7 7 O 1.21283 * 120.00174 * 219.33733 * 6 5 3 8 8 N 1.34779 * 120.00146 * 39.33719 * 6 5 3 9 9 C 1.46501 * 120.00407 * 184.99882 * 8 6 5 10 10 C 1.52991 * 109.47449 * 180.02562 * 9 8 6 11 11 H 1.08996 * 109.44065 * 300.56725 * 10 9 8 12 12 C 1.53150 * 109.43403 * 60.47960 * 10 9 8 13 13 C 1.53700 * 108.88361 * 66.12803 * 12 10 9 14 14 H 1.08999 * 112.09958 * 187.61505 * 13 12 10 15 15 C 1.54608 * 107.82865 * 311.59310 * 13 12 10 16 16 C 1.55896 * 103.99147 * 88.87449 * 15 13 12 17 17 C 1.54603 * 104.90678 * 359.97438 * 16 15 13 18 18 H 1.09002 * 112.69354 * 147.08240 * 17 16 15 19 19 C 1.53153 * 109.40024 * 180.67445 * 10 9 8 20 20 N 1.48289 * 107.27084 * 64.00716 * 13 12 10 21 21 C 1.36941 * 128.21181 * 106.81341 * 20 13 12 22 22 H 1.08001 * 119.99980 * 155.02909 * 21 20 13 23 23 C 1.38806 * 119.99592 * 335.02653 * 21 20 13 24 24 N 1.31622 * 120.00419 * 4.99436 * 23 21 20 25 25 Si 1.86808 * 120.00000 * 184.99162 * 23 21 20 26 26 H 1.48499 * 109.47084 * 95.00023 * 25 23 21 27 27 H 1.48498 * 109.47154 * 215.00006 * 25 23 21 28 28 H 1.48497 * 109.46821 * 334.99811 * 25 23 21 29 29 C 1.52995 * 117.52028 * 200.70862 * 5 3 2 30 30 C 1.52996 * 60.00064 * 107.47892 * 29 5 3 31 31 H 1.09008 * 109.46814 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47030 * 299.99377 * 1 2 3 33 33 H 1.08998 * 109.47801 * 59.99957 * 1 2 3 34 34 H 0.96993 * 120.00545 * 180.02562 * 2 1 3 35 35 H 0.97005 * 119.99995 * 5.00418 * 8 6 5 36 36 H 1.09004 * 109.46524 * 60.00248 * 9 8 6 37 37 H 1.09002 * 109.47300 * 300.00752 * 9 8 6 38 38 H 1.09001 * 109.56747 * 306.31054 * 12 10 9 39 39 H 1.08997 * 109.66723 * 186.01241 * 12 10 9 40 40 H 1.09001 * 110.37774 * 208.09023 * 15 13 12 41 41 H 1.08992 * 110.38760 * 330.45710 * 15 13 12 42 42 H 1.09006 * 110.29653 * 241.11414 * 16 15 13 43 43 H 1.09003 * 110.32192 * 118.85709 * 16 15 13 44 44 H 1.08997 * 109.56560 * 53.67072 * 19 10 9 45 45 H 1.09002 * 109.56912 * 174.02637 * 19 10 9 46 46 H 0.96998 * 120.00072 * 180.02562 * 24 23 21 47 47 H 1.08997 * 117.49971 * 214.96872 * 29 5 3 48 48 H 1.09004 * 117.49363 * 359.97438 * 29 5 3 49 49 H 1.09004 * 117.50478 * 252.51158 * 30 29 5 50 50 H 1.09008 * 117.49902 * 107.48551 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5358 2.2156 0.0916 5 6 3.6416 1.1699 -0.1138 6 6 4.2042 0.4406 -1.3065 7 8 5.2115 -0.2250 -1.1906 8 7 3.5882 0.5279 -2.5021 9 6 4.0705 -0.2666 -3.6345 10 6 3.2033 0.0169 -4.8626 11 1 2.1672 -0.2402 -4.6423 12 6 3.2946 1.5037 -5.2186 13 6 4.7285 1.8192 -5.6732 14 1 4.8886 2.8883 -5.8127 15 6 5.6989 1.2143 -4.6325 16 6 5.9480 -0.2358 -5.1477 17 6 5.1042 -0.3499 -6.4381 18 1 5.5623 -0.9995 -7.1840 19 6 3.6984 -0.8270 -6.0408 20 7 4.9762 1.0484 -6.9155 21 6 5.0543 1.5151 -8.2006 22 1 5.6159 0.9654 -8.9415 23 6 4.4117 2.6945 -8.5508 24 7 3.8102 3.4153 -7.6283 25 14 4.4005 3.2588 -10.3316 26 1 3.1510 2.7984 -10.9889 27 1 4.4687 4.7414 -10.3814 28 1 5.5729 2.6853 -11.0399 29 6 4.3847 2.4181 0.3661 30 6 4.4485 1.1276 1.1854 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.9501 -0.8399 -0.0004 35 1 2.8255 1.1170 -2.6128 36 1 4.0130 -1.3262 -3.3854 37 1 5.1049 0.0001 -3.8511 38 1 3.0486 2.1045 -4.3431 39 1 2.5975 1.7312 -6.0251 40 1 6.6272 1.7848 -4.6026 41 1 5.2336 1.1928 -3.6471 42 1 5.6113 -0.9627 -4.4085 43 1 7.0049 -0.3819 -5.3709 44 1 3.7382 -1.8760 -5.7472 45 1 3.0200 -0.7081 -6.8856 46 1 3.3608 4.2393 -7.8732 47 1 5.2806 2.7119 -0.1808 48 1 3.7866 3.2380 0.7639 49 1 3.8924 1.0982 2.1225 50 1 5.3864 0.5722 1.1774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271751162.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:24 Heat of formation + Delta-G solvation = 73.349653 kcal Electronic energy + Delta-G solvation = -31369.175477 eV Core-core repulsion = 27401.735518 eV Total energy + Delta-G solvation = -3967.439960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.36457 -40.43669 -38.75415 -36.17669 -34.82172 -34.68559 -32.87153 -31.39293 -30.37088 -29.96429 -27.98437 -26.78714 -24.63715 -23.32308 -23.26156 -22.66871 -21.69727 -20.60849 -19.94770 -19.44494 -18.89686 -18.21557 -17.03499 -16.48612 -16.23311 -15.87296 -15.50978 -14.95900 -14.88095 -14.78455 -14.26024 -14.13178 -13.55503 -13.16205 -13.06236 -12.95033 -12.82302 -12.62535 -12.57234 -12.01706 -11.84080 -11.71368 -11.46061 -11.41723 -11.26494 -11.25786 -10.85763 -10.76102 -10.71462 -10.59156 -10.33103 -10.12531 -9.86601 -9.67910 -9.58220 -9.51954 -9.42385 -9.35906 -9.21111 -8.55465 -8.15704 -6.69080 -5.81082 -3.20011 2.21600 2.45166 2.83131 3.15734 3.36768 3.43581 3.44498 3.70564 4.38871 4.45444 4.52220 4.62561 4.67422 4.94957 5.22599 5.23236 5.28367 5.35485 5.42510 5.45145 5.49387 5.54036 5.61252 5.65313 5.71782 5.82183 5.90782 5.92253 6.03913 6.06835 6.08997 6.15719 6.25600 6.42019 6.46954 6.56020 6.63776 6.69605 6.76607 6.84508 6.94006 7.07675 7.12007 7.13014 7.55885 7.61715 7.64372 7.76792 7.89149 8.25499 8.27667 9.13183 9.73759 10.58235 11.31706 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016853 B = 0.003369 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.016978 B = 8308.364944 C = 8604.415764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.728 5.728 3 C 0.553 3.447 4 O -0.526 6.526 5 C -0.205 4.205 6 C 0.550 3.450 7 O -0.536 6.536 8 N -0.710 5.710 9 C 0.003 3.997 10 C -0.087 4.087 11 H 0.049 0.951 12 C -0.110 4.110 13 C 0.185 3.815 14 H 0.103 0.897 15 C -0.175 4.175 16 C -0.159 4.159 17 C 0.147 3.853 18 H 0.067 0.933 19 C -0.120 4.120 20 N -0.583 5.583 21 C -0.229 4.229 22 H 0.072 0.928 23 C 0.005 3.995 24 N -0.906 5.906 25 Si 0.905 3.095 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.280 1.280 29 C -0.120 4.120 30 C -0.126 4.126 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.404 0.596 35 H 0.397 0.603 36 H 0.047 0.953 37 H 0.197 0.803 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.065 0.935 46 H 0.253 0.747 47 H 0.111 0.889 48 H 0.115 0.885 49 H 0.104 0.896 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 -7.887 16.545 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.379 5.379 3 C 0.338 3.662 4 O -0.402 6.402 5 C -0.211 4.211 6 C 0.334 3.666 7 O -0.414 6.414 8 N -0.360 5.360 9 C -0.115 4.115 10 C -0.106 4.106 11 H 0.067 0.933 12 C -0.150 4.150 13 C 0.078 3.922 14 H 0.121 0.879 15 C -0.213 4.213 16 C -0.197 4.197 17 C 0.039 3.961 18 H 0.085 0.915 19 C -0.160 4.160 20 N -0.304 5.304 21 C -0.357 4.357 22 H 0.089 0.911 23 C -0.193 4.193 24 N -0.551 5.551 25 Si 0.735 3.265 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 C -0.157 4.157 30 C -0.164 4.164 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.238 0.762 35 H 0.231 0.769 36 H 0.065 0.935 37 H 0.212 0.788 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.130 0.870 48 H 0.133 0.867 49 H 0.123 0.877 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.957 -7.418 16.447 18.283 hybrid contribution -0.771 0.049 -1.062 1.313 sum -3.728 -7.369 15.385 17.461 Atomic orbital electron populations 1.21590 0.79050 1.02478 1.02563 1.45713 1.07908 1.08623 1.75681 1.19247 0.87279 0.83775 0.75879 1.90733 1.69477 1.31410 1.48571 1.21606 0.92209 1.08520 0.98808 1.18941 0.83924 0.80899 0.82862 1.90700 1.24310 1.41660 1.84696 1.46297 1.34145 1.45302 1.10218 1.25277 1.08308 0.93811 0.84099 1.21268 0.97117 0.98528 0.93661 0.93306 1.22071 1.01704 0.91671 0.99523 1.21353 0.89372 0.97963 0.83535 0.87898 1.23828 1.01108 0.95500 1.00872 1.23619 1.00192 0.97050 0.98881 1.21574 0.92252 0.89136 0.93100 0.91477 1.22117 1.00117 0.96477 0.97281 1.45079 1.83391 0.99684 1.02239 1.18925 1.25313 1.06676 0.84832 0.91068 1.25061 0.98125 0.98800 0.97351 1.69861 1.38919 1.15216 1.31057 0.86227 0.77736 0.77644 0.84925 1.21565 1.21781 1.20553 1.23065 1.00972 0.90783 1.00905 1.23069 1.01198 1.00623 0.91462 0.90479 0.92042 0.91878 0.76195 0.76881 0.93508 0.78816 0.94682 0.90470 0.92997 0.89093 0.89383 0.92641 0.93729 0.91582 0.93637 0.87020 0.86687 0.87744 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.71 59.85 0.64 1.32 16 2 N -0.73 -6.84 5.66 -67.07 -0.38 -7.22 16 3 C 0.55 6.74 6.55 -10.98 -0.07 6.67 16 4 O -0.53 -8.07 16.47 5.55 0.09 -7.98 16 5 C -0.20 -2.41 2.39 -156.82 -0.38 -2.78 16 6 C 0.55 7.70 7.06 -10.99 -0.08 7.62 16 7 O -0.54 -8.83 16.28 5.56 0.09 -8.74 16 8 N -0.71 -10.08 4.25 -60.30 -0.26 -10.33 16 9 C 0.00 0.05 2.67 -4.05 -0.01 0.04 16 10 C -0.09 -1.48 2.76 -90.47 -0.25 -1.73 16 11 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 12 C -0.11 -2.24 5.12 -26.29 -0.13 -2.37 16 13 C 0.18 4.14 3.08 -65.74 -0.20 3.93 16 14 H 0.10 2.69 6.56 -51.93 -0.34 2.35 16 15 C -0.17 -3.32 5.83 -24.34 -0.14 -3.46 16 16 C -0.16 -2.81 5.75 -24.34 -0.14 -2.95 16 17 C 0.15 2.92 4.32 -65.74 -0.28 2.63 16 18 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 19 C -0.12 -2.14 5.37 -26.30 -0.14 -2.28 16 20 N -0.58 -13.99 2.81 -152.77 -0.43 -14.42 16 21 C -0.23 -6.12 10.35 -15.06 -0.16 -6.27 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 23 C 0.00 0.13 5.49 -17.43 -0.10 0.03 16 24 N -0.91 -25.12 10.32 55.49 0.57 -24.55 16 25 Si 0.90 21.40 29.56 -169.99 -5.02 16.38 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 C -0.12 -1.27 9.74 -26.74 -0.26 -1.53 16 30 C -0.13 -1.20 9.75 -26.73 -0.26 -1.46 16 31 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.40 3.19 8.83 -40.82 -0.36 2.83 16 35 H 0.40 5.63 6.88 -40.82 -0.28 5.35 16 36 H 0.05 0.71 7.98 -51.93 -0.41 0.29 16 37 H 0.20 3.25 1.12 -165.16 -0.19 3.07 16 38 H 0.03 0.66 6.75 -51.93 -0.35 0.31 16 39 H 0.08 1.85 7.69 -51.93 -0.40 1.45 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 1.62 3.96 -51.93 -0.21 1.41 16 42 H 0.09 1.41 4.83 -51.93 -0.25 1.16 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 47 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.11 1.19 7.83 -51.93 -0.41 0.79 16 49 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.12 1.15 7.68 -51.92 -0.40 0.75 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -30.94 379.44 -9.37 -40.31 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -7.79 Total: 13.43 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -1.96 Total: -2.59 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.49 Total: -56.53 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: 0.18 Total: -16.72 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.94 -9.37 -40.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271751162.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.656 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds