Wall clock time and date at job start Tue Mar 31 2020 18:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 119.99590 * 2 1 4 4 O 1.21284 * 120.00106 * 5.00238 * 3 2 1 5 5 C 1.50704 * 120.00104 * 185.00317 * 3 2 1 6 6 C 1.50697 * 115.54760 * 55.00744 * 5 3 2 7 7 O 1.21283 * 120.00174 * 219.33733 * 6 5 3 8 8 N 1.34779 * 120.00146 * 39.33719 * 6 5 3 9 9 C 1.46501 * 120.00407 * 184.99882 * 8 6 5 10 10 C 1.52991 * 109.47449 * 180.02562 * 9 8 6 11 11 H 1.08996 * 109.44065 * 300.56725 * 10 9 8 12 12 C 1.53150 * 109.43403 * 60.47960 * 10 9 8 13 13 C 1.53700 * 108.88361 * 66.12803 * 12 10 9 14 14 H 1.08999 * 112.09958 * 187.61505 * 13 12 10 15 15 C 1.54608 * 107.82865 * 311.59310 * 13 12 10 16 16 C 1.55896 * 103.99147 * 88.87449 * 15 13 12 17 17 C 1.54603 * 104.90678 * 359.97438 * 16 15 13 18 18 H 1.09002 * 112.69354 * 147.08240 * 17 16 15 19 19 C 1.53153 * 109.40024 * 180.67445 * 10 9 8 20 20 N 1.48289 * 107.27084 * 64.00716 * 13 12 10 21 21 C 1.36941 * 128.21181 * 106.81341 * 20 13 12 22 22 H 1.08001 * 119.99980 * 155.02909 * 21 20 13 23 23 C 1.38806 * 119.99592 * 335.02653 * 21 20 13 24 24 N 1.31622 * 120.00419 * 4.99436 * 23 21 20 25 25 Si 1.86808 * 120.00000 * 184.99162 * 23 21 20 26 26 H 1.48499 * 109.47084 * 95.00023 * 25 23 21 27 27 H 1.48498 * 109.47154 * 215.00006 * 25 23 21 28 28 H 1.48497 * 109.46821 * 334.99811 * 25 23 21 29 29 C 1.52995 * 117.52028 * 200.70862 * 5 3 2 30 30 C 1.52996 * 60.00064 * 107.47892 * 29 5 3 31 31 H 1.09008 * 109.46814 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47030 * 299.99377 * 1 2 3 33 33 H 1.08998 * 109.47801 * 59.99957 * 1 2 3 34 34 H 0.96993 * 120.00545 * 180.02562 * 2 1 3 35 35 H 0.97005 * 119.99995 * 5.00418 * 8 6 5 36 36 H 1.09004 * 109.46524 * 60.00248 * 9 8 6 37 37 H 1.09002 * 109.47300 * 300.00752 * 9 8 6 38 38 H 1.09001 * 109.56747 * 306.31054 * 12 10 9 39 39 H 1.08997 * 109.66723 * 186.01241 * 12 10 9 40 40 H 1.09001 * 110.37774 * 208.09023 * 15 13 12 41 41 H 1.08992 * 110.38760 * 330.45710 * 15 13 12 42 42 H 1.09006 * 110.29653 * 241.11414 * 16 15 13 43 43 H 1.09003 * 110.32192 * 118.85709 * 16 15 13 44 44 H 1.08997 * 109.56560 * 53.67072 * 19 10 9 45 45 H 1.09002 * 109.56912 * 174.02637 * 19 10 9 46 46 H 0.96998 * 120.00072 * 180.02562 * 24 23 21 47 47 H 1.08997 * 117.49971 * 214.96872 * 29 5 3 48 48 H 1.09004 * 117.49363 * 359.97438 * 29 5 3 49 49 H 1.09004 * 117.50478 * 252.51158 * 30 29 5 50 50 H 1.09008 * 117.49902 * 107.48551 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5358 2.2156 0.0916 5 6 3.6416 1.1699 -0.1138 6 6 4.2042 0.4406 -1.3065 7 8 5.2115 -0.2250 -1.1906 8 7 3.5882 0.5279 -2.5021 9 6 4.0705 -0.2666 -3.6345 10 6 3.2033 0.0169 -4.8626 11 1 2.1672 -0.2402 -4.6423 12 6 3.2946 1.5037 -5.2186 13 6 4.7285 1.8192 -5.6732 14 1 4.8886 2.8883 -5.8127 15 6 5.6989 1.2143 -4.6325 16 6 5.9480 -0.2358 -5.1477 17 6 5.1042 -0.3499 -6.4381 18 1 5.5623 -0.9995 -7.1840 19 6 3.6984 -0.8270 -6.0408 20 7 4.9762 1.0484 -6.9155 21 6 5.0543 1.5151 -8.2006 22 1 5.6159 0.9654 -8.9415 23 6 4.4117 2.6945 -8.5508 24 7 3.8102 3.4153 -7.6283 25 14 4.4005 3.2588 -10.3316 26 1 3.1510 2.7984 -10.9889 27 1 4.4687 4.7414 -10.3814 28 1 5.5729 2.6853 -11.0399 29 6 4.3847 2.4181 0.3661 30 6 4.4485 1.1276 1.1854 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.9501 -0.8399 -0.0004 35 1 2.8255 1.1170 -2.6128 36 1 4.0130 -1.3262 -3.3854 37 1 5.1049 0.0001 -3.8511 38 1 3.0486 2.1045 -4.3431 39 1 2.5975 1.7312 -6.0251 40 1 6.6272 1.7848 -4.6026 41 1 5.2336 1.1928 -3.6471 42 1 5.6113 -0.9627 -4.4085 43 1 7.0049 -0.3819 -5.3709 44 1 3.7382 -1.8760 -5.7472 45 1 3.0200 -0.7081 -6.8856 46 1 3.3608 4.2393 -7.8732 47 1 5.2806 2.7119 -0.1808 48 1 3.7866 3.2380 0.7639 49 1 3.8924 1.0982 2.1225 50 1 5.3864 0.5722 1.1774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271751162.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:23 Heat of formation + Delta-G solvation = 52.852712 kcal Electronic energy + Delta-G solvation = -31370.064291 eV Core-core repulsion = 27401.735518 eV Total energy + Delta-G solvation = -3968.328774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.74420 -41.50963 -39.86443 -37.12452 -36.09422 -35.68301 -34.60509 -32.89609 -32.00360 -31.68749 -28.97178 -28.13311 -25.97615 -24.83720 -24.71249 -23.45681 -22.76529 -22.07713 -21.15187 -20.92269 -20.30568 -19.40445 -18.69759 -17.74616 -17.17053 -16.95232 -16.67090 -16.62500 -16.01527 -15.90306 -15.72924 -15.11356 -14.98479 -14.55000 -14.51404 -14.16818 -14.03385 -13.87331 -13.71411 -13.30206 -13.14964 -13.14459 -13.02375 -12.94130 -12.65828 -12.62572 -12.40633 -12.34292 -12.16013 -11.96367 -11.66501 -11.47487 -11.31382 -11.18814 -11.05278 -10.91970 -10.86668 -10.71225 -10.44642 -10.22453 -9.48173 -8.59771 -7.85394 -5.24253 1.30475 1.38891 1.45794 1.46971 1.55155 2.04870 2.08033 2.50085 2.81594 3.32541 3.59740 3.61669 3.63365 3.65908 3.82708 3.94146 3.98299 4.03478 4.24077 4.30168 4.40972 4.42013 4.55435 4.59161 4.60203 4.61945 4.68361 4.74085 4.78802 4.86888 4.92315 4.92959 4.97670 5.05773 5.13886 5.16486 5.18213 5.30124 5.31314 5.39101 5.46163 5.53500 5.56385 5.64338 5.80147 5.92040 6.33775 6.34741 6.46689 7.03641 7.12387 7.13961 7.77302 8.62708 9.26052 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016853 B = 0.003369 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.016978 B = 8308.364944 C = 8604.415764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.716 5.716 3 C 0.553 3.447 4 O -0.565 6.565 5 C -0.216 4.216 6 C 0.555 3.445 7 O -0.557 6.557 8 N -0.709 5.709 9 C 0.013 3.987 10 C -0.077 4.077 11 H 0.065 0.935 12 C -0.099 4.099 13 C 0.180 3.820 14 H 0.056 0.944 15 C -0.165 4.165 16 C -0.147 4.147 17 C 0.139 3.861 18 H 0.070 0.930 19 C -0.114 4.114 20 N -0.607 5.607 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.047 4.047 24 N -0.929 5.929 25 Si 0.964 3.036 26 H -0.289 1.289 27 H -0.297 1.297 28 H -0.271 1.271 29 C -0.125 4.125 30 C -0.103 4.103 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.414 0.586 35 H 0.397 0.603 36 H 0.066 0.934 37 H 0.185 0.815 38 H 0.042 0.958 39 H 0.033 0.967 40 H 0.042 0.958 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.040 0.960 46 H 0.246 0.754 47 H 0.110 0.890 48 H 0.115 0.885 49 H 0.125 0.875 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.063 -10.316 18.223 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.367 5.367 3 C 0.338 3.662 4 O -0.443 6.443 5 C -0.222 4.222 6 C 0.341 3.659 7 O -0.436 6.436 8 N -0.359 5.359 9 C -0.106 4.106 10 C -0.095 4.095 11 H 0.083 0.917 12 C -0.138 4.138 13 C 0.073 3.927 14 H 0.074 0.926 15 C -0.203 4.203 16 C -0.185 4.185 17 C 0.032 3.968 18 H 0.088 0.912 19 C -0.154 4.154 20 N -0.329 5.329 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.242 4.242 24 N -0.575 5.575 25 Si 0.793 3.207 26 H -0.217 1.217 27 H -0.224 1.224 28 H -0.196 1.196 29 C -0.163 4.163 30 C -0.140 4.140 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.250 0.750 35 H 0.232 0.768 36 H 0.085 0.915 37 H 0.200 0.800 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.129 0.871 48 H 0.133 0.867 49 H 0.143 0.857 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.892 -9.907 18.135 20.866 hybrid contribution -0.771 0.786 -1.570 1.918 sum -3.663 -9.121 16.565 19.261 Atomic orbital electron populations 1.21742 0.78002 1.04447 1.01829 1.45702 1.08635 1.08242 1.74072 1.19316 0.87366 0.83926 0.75548 1.90720 1.70109 1.32813 1.50689 1.21537 0.92227 1.09350 0.99103 1.19159 0.83377 0.80364 0.83040 1.90691 1.25234 1.42643 1.85071 1.46241 1.34225 1.45245 1.10159 1.24959 1.06922 0.95027 0.83671 1.21145 0.98555 0.95595 0.94245 0.91680 1.21835 0.99217 0.94612 0.98146 1.21233 0.91504 0.95627 0.84327 0.92617 1.23773 0.99765 0.96263 1.00513 1.23567 1.00282 0.96424 0.98189 1.21827 0.93919 0.86974 0.94068 0.91221 1.22027 0.97991 0.98719 0.96661 1.45289 1.83722 1.02020 1.01847 1.19201 1.24795 1.06645 0.86208 0.91236 1.25719 0.98623 0.99313 1.00581 1.70058 1.39932 1.15217 1.32286 0.85287 0.77720 0.76605 0.81057 1.21653 1.22412 1.19585 1.23123 1.00737 0.91067 1.01329 1.23176 1.00770 0.98966 0.91132 0.87174 0.92297 0.93127 0.75046 0.76784 0.91542 0.80000 0.93959 0.94784 0.93880 0.87501 0.86568 0.92014 0.89868 0.94123 0.94505 0.87135 0.86650 0.85707 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.71 127.77 1.37 2.49 16 2 N -0.72 -11.74 5.66 -484.50 -2.74 -14.49 16 3 C 0.55 12.57 6.55 87.66 0.57 13.15 16 4 O -0.56 -16.92 16.47 -3.04 -0.05 -16.97 16 5 C -0.22 -4.65 2.39 -53.68 -0.13 -4.78 16 6 C 0.55 14.22 7.06 87.66 0.62 14.84 16 7 O -0.56 -16.76 16.28 -3.04 -0.05 -16.81 16 8 N -0.71 -18.51 4.25 -463.06 -1.97 -20.48 16 9 C 0.01 0.37 2.67 86.38 0.23 0.60 16 10 C -0.08 -2.47 2.76 -10.70 -0.03 -2.50 16 11 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 12 C -0.10 -4.07 5.12 30.88 0.16 -3.91 16 13 C 0.18 8.26 3.08 45.43 0.14 8.40 16 14 H 0.06 3.07 6.56 -2.39 -0.02 3.06 16 15 C -0.16 -6.15 5.83 32.14 0.19 -5.97 16 16 C -0.15 -4.84 5.75 32.14 0.18 -4.66 16 17 C 0.14 5.32 4.32 45.42 0.20 5.51 16 18 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 19 C -0.11 -3.85 5.37 30.88 0.17 -3.69 16 20 N -0.61 -29.63 2.81 -637.24 -1.79 -31.42 16 21 C -0.24 -13.08 10.35 84.03 0.87 -12.21 16 22 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 23 C -0.05 -2.61 5.49 84.86 0.47 -2.15 16 24 N -0.93 -53.91 10.32 21.65 0.22 -53.68 16 25 Si 0.96 45.23 29.56 68.60 2.03 47.25 16 26 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 27 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 29 C -0.12 -2.47 9.74 30.59 0.30 -2.18 16 30 C -0.10 -1.69 9.75 30.59 0.30 -1.39 16 31 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.41 5.23 8.83 -92.71 -0.82 4.41 16 35 H 0.40 10.61 6.88 -92.70 -0.64 9.97 16 36 H 0.07 1.68 7.98 -2.38 -0.02 1.66 16 37 H 0.18 5.58 1.12 -108.74 -0.12 5.46 16 38 H 0.04 1.63 6.75 -2.39 -0.02 1.61 16 39 H 0.03 1.68 7.69 -2.39 -0.02 1.66 16 40 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 41 H 0.11 3.64 3.96 -2.39 -0.01 3.64 16 42 H 0.12 3.25 4.83 -2.38 -0.01 3.24 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 45 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 47 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.12 2.29 7.83 -2.39 -0.02 2.27 16 49 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 50 H 0.12 2.00 7.68 -2.38 -0.02 1.98 16 Total: -1.00 -69.46 379.44 0.65 -68.81 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: -0.59 Total: 36.23 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 5.60 Total: 1.56 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -6.28 Total: -120.07 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.10 Total: -33.78 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -69.46 0.65 -68.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271751162.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.663 kcal (2) G-P(sol) polarization free energy of solvation -69.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds