Wall clock time and date at job start Tue Mar 31 2020 18:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99719 * 2 1 4 4 C 1.46903 * 111.00215 * 123.94866 * 2 1 3 5 5 C 1.52999 * 109.46861 * 170.00071 * 4 2 1 6 6 C 1.50700 * 109.46958 * 180.02562 * 5 4 2 7 7 C 1.37979 * 120.07594 * 97.87586 * 6 5 4 8 8 C 1.38342 * 120.14274 * 180.02562 * 7 6 5 9 9 C 1.38377 * 120.29220 * 359.97438 * 8 7 6 10 10 C 1.37939 * 120.15071 * 359.97438 * 9 8 7 11 11 C 1.39556 * 120.07189 * 277.87148 * 6 5 4 12 12 C 1.47850 * 120.14319 * 0.02562 * 11 6 5 13 13 O 1.21551 * 119.99910 * 5.59979 * 12 11 6 14 14 N 1.34782 * 119.99994 * 185.59151 * 12 11 6 15 15 C 1.46493 * 119.99811 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.46948 * 180.02562 * 15 14 12 17 17 H 1.08999 * 109.47553 * 304.99976 * 16 15 14 18 18 O 1.42896 * 109.47040 * 65.00535 * 16 15 14 19 19 C 1.53002 * 109.47033 * 185.00213 * 16 15 14 20 20 N 1.46506 * 109.46834 * 180.02562 * 19 16 15 21 21 C 1.36945 * 119.99799 * 180.02562 * 20 19 16 22 22 H 1.07998 * 119.99663 * 359.97438 * 21 20 19 23 23 C 1.38803 * 119.99984 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00254 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 120.00063 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47187 * 90.00279 * 25 23 21 27 27 H 1.48498 * 109.46886 * 210.00558 * 25 23 21 28 28 H 1.48499 * 109.46762 * 330.00367 * 25 23 21 29 29 H 1.09007 * 109.47241 * 296.04404 * 1 2 3 30 30 H 1.08993 * 109.47767 * 56.04509 * 1 2 3 31 31 H 1.09000 * 109.46975 * 176.05048 * 1 2 3 32 32 H 1.09002 * 109.47237 * 183.95778 * 3 2 1 33 33 H 1.09004 * 109.47100 * 303.95351 * 3 2 1 34 34 H 1.09005 * 109.47411 * 63.95201 * 3 2 1 35 35 H 1.09002 * 109.46741 * 50.00997 * 4 2 1 36 36 H 1.08998 * 109.47436 * 290.00219 * 4 2 1 37 37 H 1.08998 * 109.47315 * 60.00239 * 5 4 2 38 38 H 1.09001 * 109.47663 * 300.00477 * 5 4 2 39 39 H 1.07994 * 119.92988 * 0.02562 * 7 6 5 40 40 H 1.07997 * 119.85287 * 179.97438 * 8 7 6 41 41 H 1.08003 * 119.92840 * 180.02562 * 9 8 7 42 42 H 1.07989 * 120.07444 * 179.73162 * 10 9 8 43 43 H 0.97000 * 119.99634 * 0.02562 * 14 12 11 44 44 H 1.09001 * 109.47814 * 300.00346 * 15 14 12 45 45 H 1.08998 * 109.47507 * 60.00960 * 15 14 12 46 46 H 0.96701 * 114.00218 * 59.99716 * 18 16 15 47 47 H 1.08999 * 109.47372 * 299.99807 * 19 16 15 48 48 H 1.08994 * 109.47384 * 60.00102 * 19 16 15 49 49 H 0.96997 * 120.00157 * 359.97438 * 20 19 16 50 50 H 0.96998 * 119.99793 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 3.5045 -0.9552 0.9703 6 6 4.0445 -1.7414 2.1371 7 6 4.2510 -3.1005 2.0188 8 6 4.7462 -3.8237 3.0891 9 6 5.0381 -3.1902 4.2842 10 6 4.8373 -1.8318 4.4155 11 6 4.3370 -1.0964 3.3396 12 6 4.1177 0.3596 3.4736 13 8 3.5877 0.9799 2.5725 14 7 4.5055 0.9991 4.5948 15 6 4.2887 2.4419 4.7273 16 6 4.8162 2.9144 6.0836 17 1 4.3513 2.3303 6.8779 18 8 6.2336 2.7392 6.1307 19 6 4.4787 4.3944 6.2746 20 7 4.9843 4.8470 7.5730 21 6 4.7979 6.1457 7.9655 22 1 4.2786 6.8363 7.3177 23 6 5.2774 6.5746 9.1954 24 7 5.0988 7.8230 9.5725 25 14 6.1764 5.3802 10.3156 26 1 7.6301 5.4182 10.0150 27 1 5.9535 5.7667 11.7320 28 1 5.6600 4.0062 10.0903 29 1 -0.3634 0.4512 0.9234 30 1 -0.3634 0.5739 -0.8523 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0827 1.3433 -0.0709 33 1 1.5897 1.9163 -0.8525 34 1 1.7042 1.8724 0.9233 35 1 1.5091 -1.7406 1.1756 36 1 1.7976 -0.2246 2.0628 37 1 3.9909 0.0195 0.9322 38 1 3.7025 -1.4964 0.0451 39 1 4.0255 -3.6008 1.0887 40 1 4.9056 -4.8874 2.9915 41 1 5.4248 -3.7604 5.1159 42 1 5.0615 -1.3394 5.3501 43 1 4.9286 0.5042 5.3137 44 1 4.8182 2.9637 3.9301 45 1 3.2225 2.6572 4.6569 46 1 6.7136 3.2314 5.4506 47 1 4.9436 4.9786 5.4804 48 1 3.3976 4.5281 6.2387 49 1 5.4504 4.2266 8.1550 50 1 5.4336 8.1225 10.4322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272488124.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:00 Heat of formation + Delta-G solvation = -39.244007 kcal Electronic energy + Delta-G solvation = -28932.706280 eV Core-core repulsion = 24960.383892 eV Total energy + Delta-G solvation = -3972.322387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75391 -38.80416 -37.74607 -37.51681 -34.74753 -34.21945 -33.14801 -31.85703 -31.37046 -29.49714 -28.98117 -27.62437 -25.96597 -24.75764 -23.81571 -22.46072 -21.81139 -21.55980 -20.92624 -20.42253 -18.19384 -17.74905 -16.61001 -16.40848 -16.19186 -15.80696 -15.72601 -15.39678 -14.94144 -14.91497 -14.79943 -14.64711 -14.51716 -13.78913 -13.70979 -13.35415 -13.26374 -13.20831 -12.93839 -12.65837 -12.42369 -12.42099 -12.13815 -12.06611 -11.90597 -11.85132 -11.58260 -11.33113 -11.26730 -10.95258 -10.89694 -10.84282 -10.21290 -9.97084 -9.71106 -9.57393 -9.39530 -9.21913 -9.00341 -8.95621 -8.45181 -7.29456 -5.80787 -3.17314 0.54586 0.98827 2.66005 2.96178 3.36958 3.41619 3.44332 3.50625 3.85971 4.38798 4.43895 4.48768 4.53773 4.56893 4.66853 4.70185 4.90771 4.99053 5.05435 5.07908 5.11123 5.16574 5.31145 5.37796 5.40347 5.47811 5.51015 5.52895 5.59301 5.63723 5.64814 5.70162 5.74667 5.79538 5.80974 5.92884 5.94799 6.05503 6.08749 6.27930 6.32451 6.37288 6.50307 6.52900 6.90090 6.92504 7.33042 7.72707 7.94937 8.05254 8.37700 9.17074 9.88934 10.08493 11.37215 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.002452 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.655163 B =11415.449206 C =13117.850842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.031 3.969 4 C 0.073 3.927 5 C -0.085 4.085 6 C -0.020 4.020 7 C -0.127 4.127 8 C -0.093 4.093 9 C -0.133 4.133 10 C -0.083 4.083 11 C -0.135 4.135 12 C 0.553 3.447 13 O -0.528 6.528 14 N -0.718 5.718 15 C 0.093 3.907 16 C 0.084 3.916 17 H 0.103 0.897 18 O -0.557 6.557 19 C 0.131 3.869 20 N -0.749 5.749 21 C -0.249 4.249 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.933 5.933 25 Si 0.888 3.112 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.032 0.968 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.402 0.598 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.377 0.623 47 H 0.032 0.968 48 H 0.037 0.963 49 H 0.366 0.634 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.327 -25.478 -17.967 31.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.117 4.117 4 C -0.055 4.055 5 C -0.122 4.122 6 C -0.022 4.022 7 C -0.145 4.145 8 C -0.111 4.111 9 C -0.151 4.151 10 C -0.102 4.102 11 C -0.138 4.138 12 C 0.341 3.659 13 O -0.406 6.406 14 N -0.370 5.370 15 C -0.032 4.032 16 C 0.025 3.975 17 H 0.121 0.879 18 O -0.362 6.362 19 C 0.003 3.997 20 N -0.396 5.396 21 C -0.378 4.378 22 H 0.107 0.893 23 C -0.190 4.190 24 N -0.580 5.580 25 Si 0.719 3.281 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.238 0.762 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.224 0.776 47 H 0.050 0.950 48 H 0.055 0.945 49 H 0.200 0.800 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.792 -25.350 -18.527 31.627 hybrid contribution 0.683 -0.235 1.682 1.831 sum -3.108 -25.586 -16.845 30.790 Atomic orbital electron populations 1.22350 0.87793 1.01788 1.00435 1.62019 1.07381 1.14659 1.43064 1.22330 1.01138 0.88140 1.00104 1.21931 0.94011 0.97267 0.92305 1.20807 0.95793 1.01439 0.94135 1.19992 0.94575 0.93596 0.94045 1.21098 1.00764 0.93224 0.99449 1.21362 0.96669 1.00110 0.92949 1.21107 1.01343 0.94454 0.98176 1.21349 0.96559 0.94538 0.97735 1.19835 1.05284 0.93313 0.95367 1.18280 0.78539 0.86888 0.82207 1.90732 1.42843 1.68193 1.38857 1.45875 1.62183 1.09610 1.19318 1.22077 1.02337 0.80139 0.98619 1.22447 0.81902 0.97832 0.95357 0.87884 1.86539 1.17606 1.73020 1.59038 1.21160 0.98016 0.90681 0.89837 1.42563 1.69612 1.10437 1.16966 1.19037 1.31516 0.85695 1.01597 0.89263 1.24679 1.00724 0.96020 0.97610 1.69708 1.51190 1.14929 1.22205 0.86490 0.80193 0.80876 0.80591 1.20989 1.21785 1.20308 0.95776 0.91515 0.91738 0.90982 0.92428 0.94907 0.92027 0.93631 0.87874 0.91199 0.85320 0.85594 0.85421 0.85541 0.76175 0.90736 0.90240 0.77557 0.95008 0.94543 0.80020 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.57 60.06 0.57 0.80 16 2 N -0.55 -5.78 5.02 -251.25 -1.26 -7.04 16 3 C 0.03 0.34 8.54 60.06 0.51 0.85 16 4 C 0.07 0.77 4.49 -3.82 -0.02 0.75 16 5 C -0.08 -0.85 4.53 -27.88 -0.13 -0.98 16 6 C -0.02 -0.20 5.17 -104.23 -0.54 -0.74 16 7 C -0.13 -0.99 9.66 -39.64 -0.38 -1.37 16 8 C -0.09 -0.63 10.04 -39.49 -0.40 -1.03 16 9 C -0.13 -0.95 10.03 -39.64 -0.40 -1.35 16 10 C -0.08 -0.69 9.53 -39.18 -0.37 -1.07 16 11 C -0.13 -1.37 5.87 -104.97 -0.62 -1.98 16 12 C 0.55 6.43 7.65 -12.32 -0.09 6.33 16 13 O -0.53 -7.09 10.62 5.32 0.06 -7.03 16 14 N -0.72 -7.61 5.45 -61.25 -0.33 -7.94 16 15 C 0.09 1.08 5.31 -4.04 -0.02 1.06 16 16 C 0.08 1.15 3.09 -26.73 -0.08 1.07 16 17 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 18 O -0.56 -7.78 13.03 -35.23 -0.46 -8.24 16 19 C 0.13 2.36 5.92 -4.04 -0.02 2.33 16 20 N -0.75 -17.52 5.30 -59.91 -0.32 -17.83 16 21 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 22 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 23 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 25 Si 0.89 22.27 27.74 -169.99 -4.71 17.56 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 29 H 0.02 0.22 8.14 -51.92 -0.42 -0.20 16 30 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.07 0.82 6.46 -51.93 -0.34 0.48 16 33 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.03 0.40 7.96 -51.93 -0.41 -0.01 16 35 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 36 H 0.05 0.57 6.59 -51.93 -0.34 0.23 16 37 H 0.10 1.23 4.35 -51.93 -0.23 1.00 16 38 H 0.07 0.64 8.03 -51.93 -0.42 0.23 16 39 H 0.13 0.77 8.05 -52.49 -0.42 0.35 16 40 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.13 0.87 6.45 -52.49 -0.34 0.53 16 43 H 0.40 3.73 6.54 -40.82 -0.27 3.46 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.38 4.35 9.05 45.56 0.41 4.76 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.37 8.54 5.40 -40.82 -0.22 8.32 16 50 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -33.55 399.86 -9.69 -43.24 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -7.23 Total: 12.23 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.24 Total: -2.44 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -1.14 Total: -61.35 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.40 Total: -15.27 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.55 -9.69 -43.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272488124.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.998 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds