Wall clock time and date at job start Tue Mar 31 2020 18:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99719 * 2 1 4 4 C 1.46903 * 111.00215 * 123.94866 * 2 1 3 5 5 C 1.52999 * 109.46861 * 170.00071 * 4 2 1 6 6 C 1.50700 * 109.46958 * 180.02562 * 5 4 2 7 7 C 1.37979 * 120.07594 * 97.87586 * 6 5 4 8 8 C 1.38342 * 120.14274 * 180.02562 * 7 6 5 9 9 C 1.38377 * 120.29220 * 359.97438 * 8 7 6 10 10 C 1.37939 * 120.15071 * 359.97438 * 9 8 7 11 11 C 1.39556 * 120.07189 * 277.87148 * 6 5 4 12 12 C 1.47850 * 120.14319 * 0.02562 * 11 6 5 13 13 O 1.21551 * 119.99910 * 5.59979 * 12 11 6 14 14 N 1.34782 * 119.99994 * 185.59151 * 12 11 6 15 15 C 1.46493 * 119.99811 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.46948 * 180.02562 * 15 14 12 17 17 H 1.08999 * 109.47553 * 304.99976 * 16 15 14 18 18 O 1.42896 * 109.47040 * 65.00535 * 16 15 14 19 19 C 1.53002 * 109.47033 * 185.00213 * 16 15 14 20 20 N 1.46506 * 109.46834 * 180.02562 * 19 16 15 21 21 C 1.36945 * 119.99799 * 180.02562 * 20 19 16 22 22 H 1.07998 * 119.99663 * 359.97438 * 21 20 19 23 23 C 1.38803 * 119.99984 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00254 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 120.00063 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47187 * 90.00279 * 25 23 21 27 27 H 1.48498 * 109.46886 * 210.00558 * 25 23 21 28 28 H 1.48499 * 109.46762 * 330.00367 * 25 23 21 29 29 H 1.09007 * 109.47241 * 296.04404 * 1 2 3 30 30 H 1.08993 * 109.47767 * 56.04509 * 1 2 3 31 31 H 1.09000 * 109.46975 * 176.05048 * 1 2 3 32 32 H 1.09002 * 109.47237 * 183.95778 * 3 2 1 33 33 H 1.09004 * 109.47100 * 303.95351 * 3 2 1 34 34 H 1.09005 * 109.47411 * 63.95201 * 3 2 1 35 35 H 1.09002 * 109.46741 * 50.00997 * 4 2 1 36 36 H 1.08998 * 109.47436 * 290.00219 * 4 2 1 37 37 H 1.08998 * 109.47315 * 60.00239 * 5 4 2 38 38 H 1.09001 * 109.47663 * 300.00477 * 5 4 2 39 39 H 1.07994 * 119.92988 * 0.02562 * 7 6 5 40 40 H 1.07997 * 119.85287 * 179.97438 * 8 7 6 41 41 H 1.08003 * 119.92840 * 180.02562 * 9 8 7 42 42 H 1.07989 * 120.07444 * 179.73162 * 10 9 8 43 43 H 0.97000 * 119.99634 * 0.02562 * 14 12 11 44 44 H 1.09001 * 109.47814 * 300.00346 * 15 14 12 45 45 H 1.08998 * 109.47507 * 60.00960 * 15 14 12 46 46 H 0.96701 * 114.00218 * 59.99716 * 18 16 15 47 47 H 1.08999 * 109.47372 * 299.99807 * 19 16 15 48 48 H 1.08994 * 109.47384 * 60.00102 * 19 16 15 49 49 H 0.96997 * 120.00157 * 359.97438 * 20 19 16 50 50 H 0.96998 * 119.99793 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 3.5045 -0.9552 0.9703 6 6 4.0445 -1.7414 2.1371 7 6 4.2510 -3.1005 2.0188 8 6 4.7462 -3.8237 3.0891 9 6 5.0381 -3.1902 4.2842 10 6 4.8373 -1.8318 4.4155 11 6 4.3370 -1.0964 3.3396 12 6 4.1177 0.3596 3.4736 13 8 3.5877 0.9799 2.5725 14 7 4.5055 0.9991 4.5948 15 6 4.2887 2.4419 4.7273 16 6 4.8162 2.9144 6.0836 17 1 4.3513 2.3303 6.8779 18 8 6.2336 2.7392 6.1307 19 6 4.4787 4.3944 6.2746 20 7 4.9843 4.8470 7.5730 21 6 4.7979 6.1457 7.9655 22 1 4.2786 6.8363 7.3177 23 6 5.2774 6.5746 9.1954 24 7 5.0988 7.8230 9.5725 25 14 6.1764 5.3802 10.3156 26 1 7.6301 5.4182 10.0150 27 1 5.9535 5.7667 11.7320 28 1 5.6600 4.0062 10.0903 29 1 -0.3634 0.4512 0.9234 30 1 -0.3634 0.5739 -0.8523 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0827 1.3433 -0.0709 33 1 1.5897 1.9163 -0.8525 34 1 1.7042 1.8724 0.9233 35 1 1.5091 -1.7406 1.1756 36 1 1.7976 -0.2246 2.0628 37 1 3.9909 0.0195 0.9322 38 1 3.7025 -1.4964 0.0451 39 1 4.0255 -3.6008 1.0887 40 1 4.9056 -4.8874 2.9915 41 1 5.4248 -3.7604 5.1159 42 1 5.0615 -1.3394 5.3501 43 1 4.9286 0.5042 5.3137 44 1 4.8182 2.9637 3.9301 45 1 3.2225 2.6572 4.6569 46 1 6.7136 3.2314 5.4506 47 1 4.9436 4.9786 5.4804 48 1 3.3976 4.5281 6.2387 49 1 5.4504 4.2266 8.1550 50 1 5.4336 8.1225 10.4322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272488124.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:59 Heat of formation + Delta-G solvation = -65.538044 kcal Electronic energy + Delta-G solvation = -28933.846475 eV Core-core repulsion = 24960.383892 eV Total energy + Delta-G solvation = -3973.462582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.52668 -39.67878 -38.76248 -38.36776 -36.23029 -35.48766 -33.86575 -33.50842 -32.43329 -30.69247 -29.78549 -28.45081 -27.34588 -25.63080 -24.69353 -23.87120 -22.94472 -22.56493 -21.77879 -21.26091 -19.82905 -18.91801 -17.71217 -17.26416 -17.10260 -16.69251 -16.57254 -16.54541 -16.18486 -15.78159 -15.70321 -15.57591 -15.50901 -15.36610 -14.99644 -14.49448 -14.30577 -14.08897 -13.93926 -13.79265 -13.63347 -13.36512 -13.23912 -13.17787 -12.82951 -12.76520 -12.67351 -12.52805 -12.35016 -12.25278 -11.92739 -11.91020 -11.85344 -11.75203 -11.11634 -11.03052 -10.60954 -10.19715 -9.87931 -9.67284 -9.34203 -9.31235 -8.05525 -5.39649 -0.10374 0.40233 1.38212 1.41476 1.48799 1.89533 2.07722 2.46878 2.83662 3.08578 3.24960 3.31533 3.50602 3.70720 3.86450 3.89868 3.95869 4.07417 4.15041 4.16797 4.18277 4.29242 4.35953 4.49598 4.51341 4.54289 4.57490 4.65632 4.70469 4.72016 4.78765 4.88629 4.89362 4.95715 4.99811 5.03004 5.10855 5.14845 5.23445 5.36941 5.43777 5.52372 5.61522 5.71497 5.96126 6.06156 6.12715 6.17963 6.50201 6.72694 7.05462 7.20287 7.80415 8.00011 9.15763 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.002452 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.655163 B =11415.449206 C =13117.850842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.552 5.552 3 C 0.039 3.961 4 C 0.080 3.920 5 C -0.077 4.077 6 C -0.037 4.037 7 C -0.131 4.131 8 C -0.088 4.088 9 C -0.134 4.134 10 C -0.088 4.088 11 C -0.155 4.155 12 C 0.548 3.452 13 O -0.552 6.552 14 N -0.711 5.711 15 C 0.105 3.895 16 C 0.106 3.894 17 H 0.108 0.892 18 O -0.563 6.563 19 C 0.125 3.875 20 N -0.752 5.752 21 C -0.239 4.239 22 H 0.056 0.944 23 C -0.064 4.064 24 N -0.983 5.983 25 Si 0.960 3.040 26 H -0.279 1.279 27 H -0.296 1.296 28 H -0.252 1.252 29 H 0.015 0.985 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.012 0.988 35 H 0.071 0.929 36 H 0.021 0.979 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.146 0.854 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.139 0.861 43 H 0.411 0.589 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.388 0.612 47 H 0.035 0.965 48 H 0.036 0.964 49 H 0.369 0.631 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.578 -29.247 -18.158 34.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.276 5.276 3 C -0.109 4.109 4 C -0.048 4.048 5 C -0.114 4.114 6 C -0.038 4.038 7 C -0.149 4.149 8 C -0.106 4.106 9 C -0.152 4.152 10 C -0.107 4.107 11 C -0.158 4.158 12 C 0.337 3.663 13 O -0.432 6.432 14 N -0.364 5.364 15 C -0.019 4.019 16 C 0.046 3.954 17 H 0.126 0.874 18 O -0.370 6.370 19 C -0.003 4.003 20 N -0.399 5.399 21 C -0.369 4.369 22 H 0.074 0.926 23 C -0.255 4.255 24 N -0.633 5.633 25 Si 0.787 3.213 26 H -0.205 1.205 27 H -0.222 1.222 28 H -0.177 1.177 29 H 0.033 0.967 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.030 0.970 35 H 0.089 0.911 36 H 0.039 0.961 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.164 0.836 40 H 0.173 0.827 41 H 0.170 0.830 42 H 0.157 0.843 43 H 0.248 0.752 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.237 0.763 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.203 0.797 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.041 -29.169 -18.754 34.811 hybrid contribution 0.403 0.928 1.625 1.914 sum -2.638 -28.241 -17.129 33.135 Atomic orbital electron populations 1.22419 0.86769 1.02793 1.00451 1.62077 1.08393 1.14234 1.42906 1.22231 1.00681 0.88483 0.99534 1.21858 0.94608 0.97181 0.91153 1.20669 0.95179 1.00567 0.94969 1.20059 0.95508 0.94542 0.93721 1.21334 1.00424 0.92440 1.00666 1.21742 0.95056 1.01499 0.92259 1.21460 1.00533 0.94043 0.99129 1.21549 0.96248 0.95270 0.97630 1.19812 1.07098 0.92384 0.96479 1.18636 0.78037 0.87741 0.81892 1.90731 1.43918 1.68888 1.39690 1.45744 1.62145 1.08974 1.19494 1.21805 1.01830 0.80984 0.97327 1.22137 0.82097 0.94689 0.96491 0.87374 1.86516 1.17509 1.73168 1.59784 1.21378 0.97728 0.93757 0.87397 1.42537 1.69796 1.08645 1.18884 1.19034 1.29775 0.87240 1.00897 0.92577 1.25537 1.02488 0.97913 0.99597 1.69889 1.53255 1.17354 1.22846 0.85333 0.78761 0.79464 0.77702 1.20482 1.22229 1.17707 0.96656 0.90440 0.90405 0.91843 0.91153 0.96956 0.91086 0.96111 0.90074 0.90453 0.83630 0.82736 0.83003 0.84343 0.75199 0.90803 0.90787 0.76277 0.94714 0.94573 0.79669 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.57 127.69 1.22 1.63 16 2 N -0.55 -11.57 5.02 -948.83 -4.76 -16.34 16 3 C 0.04 0.87 8.54 127.69 1.09 1.96 16 4 C 0.08 1.69 4.49 86.30 0.39 2.08 16 5 C -0.08 -1.54 4.53 29.85 0.14 -1.41 16 6 C -0.04 -0.67 5.17 -19.61 -0.10 -0.78 16 7 C -0.13 -1.73 9.66 22.23 0.21 -1.52 16 8 C -0.09 -0.90 10.04 22.33 0.22 -0.68 16 9 C -0.13 -1.49 10.03 22.23 0.22 -1.26 16 10 C -0.09 -1.29 9.53 22.53 0.21 -1.08 16 11 C -0.15 -3.00 5.87 -20.09 -0.12 -3.12 16 12 C 0.55 12.65 7.65 86.79 0.66 13.32 16 13 O -0.55 -15.30 10.62 -3.88 -0.04 -15.34 16 14 N -0.71 -14.37 5.45 -465.97 -2.54 -16.91 16 15 C 0.11 2.37 5.31 86.38 0.46 2.83 16 16 C 0.11 2.72 3.09 30.60 0.09 2.81 16 17 H 0.11 2.73 8.14 -2.39 -0.02 2.72 16 18 O -0.56 -14.45 13.03 -148.98 -1.94 -16.39 16 19 C 0.12 4.37 5.92 86.38 0.51 4.88 16 20 N -0.75 -34.47 5.30 -343.45 -1.82 -36.29 16 21 C -0.24 -13.62 10.47 84.03 0.88 -12.74 16 22 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 23 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 24 N -0.98 -63.25 13.97 21.65 0.30 -62.95 16 25 Si 0.96 45.75 27.74 68.60 1.90 47.65 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 28 H -0.25 -10.88 6.52 99.48 0.65 -10.23 16 29 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.08 1.15 8.12 -2.39 -0.02 1.13 16 31 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 32 H 0.06 1.50 6.46 -2.39 -0.02 1.49 16 33 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 34 H 0.01 0.31 7.96 -2.38 -0.02 0.29 16 35 H 0.07 1.33 8.06 -2.39 -0.02 1.31 16 36 H 0.02 0.54 6.59 -2.39 -0.02 0.53 16 37 H 0.08 2.01 4.35 -2.39 -0.01 2.00 16 38 H 0.08 1.38 8.03 -2.39 -0.02 1.36 16 39 H 0.15 1.35 8.05 -2.91 -0.02 1.33 16 40 H 0.15 0.69 8.06 -2.91 -0.02 0.66 16 41 H 0.15 0.93 8.06 -2.91 -0.02 0.90 16 42 H 0.14 1.57 6.45 -2.92 -0.02 1.55 16 43 H 0.41 6.87 6.54 -92.71 -0.61 6.27 16 44 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.39 8.16 9.05 -74.06 -0.67 7.49 16 47 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.37 16.40 5.40 -92.71 -0.50 15.90 16 50 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -73.70 399.86 -3.20 -76.90 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: -0.87 Total: 36.04 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 6.57 Total: 3.62 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -8.82 Total: -132.48 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -1.98 Total: -31.73 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.90 Total: 47.65 kcal Total: -73.70 -3.20 -76.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272488124.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.365 kcal (2) G-P(sol) polarization free energy of solvation -73.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds