Wall clock time and date at job start Tue Mar 31 2020 18:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46788 * 231.48469 * 3 2 1 5 5 C 1.53002 * 109.47229 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47158 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99895 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99869 * 179.97438 * 6 5 4 9 9 C 1.47423 * 125.64721 * 5.56468 * 8 6 5 10 10 C 1.54914 * 104.83272 * 204.09089 * 9 8 6 11 11 C 1.55157 * 101.58046 * 322.99265 * 10 9 8 12 12 C 1.47021 * 125.65037 * 185.52080 * 8 6 5 13 13 H 1.09000 * 109.87926 * 59.56064 * 12 8 6 14 14 C 1.52999 * 109.88256 * 298.39603 * 12 8 6 15 15 N 1.46905 * 109.46914 * 179.22770 * 14 12 8 16 16 C 1.46894 * 111.00069 * 295.25466 * 15 14 12 17 17 C 1.46907 * 110.99714 * 171.30258 * 15 14 12 18 18 C 1.50703 * 109.46950 * 190.00033 * 17 15 14 19 19 O 1.21290 * 119.99939 * 0.02562 * 18 17 15 20 20 N 1.34780 * 119.99756 * 179.97438 * 18 17 15 21 21 C 1.37094 * 119.99528 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00713 * 0.02562 * 21 20 18 23 23 C 1.38957 * 119.99636 * 180.02562 * 21 20 18 24 24 N 1.31404 * 119.99831 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00074 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47202 * 89.99556 * 25 23 21 27 27 H 1.48500 * 109.47017 * 209.99865 * 25 23 21 28 28 H 1.48509 * 109.47082 * 329.99638 * 25 23 21 29 29 H 4.44649 * 5.63347 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47055 * 111.49002 * 3 2 1 31 31 H 1.08998 * 109.47246 * 351.47928 * 3 2 1 32 32 H 1.09005 * 109.47286 * 59.99825 * 4 3 2 33 33 H 1.09002 * 109.47400 * 300.00408 * 4 3 2 34 34 H 1.08992 * 109.47059 * 59.99686 * 5 4 3 35 35 H 1.09004 * 109.46615 * 299.99830 * 5 4 3 36 36 H 1.09000 * 110.37089 * 322.92996 * 9 8 6 37 37 H 1.09005 * 110.36730 * 85.25948 * 9 8 6 38 38 H 1.08991 * 111.00660 * 204.91649 * 10 9 8 39 39 H 1.09000 * 111.00565 * 81.06308 * 10 9 8 40 40 H 1.09001 * 110.72202 * 277.13156 * 11 10 9 41 41 H 1.09000 * 110.71810 * 153.86319 * 11 10 9 42 42 H 1.08999 * 109.47201 * 299.22889 * 14 12 8 43 43 H 1.09004 * 109.47159 * 59.23265 * 14 12 8 44 44 H 1.09002 * 109.46825 * 55.81786 * 16 15 14 45 45 H 1.09007 * 109.46826 * 175.80969 * 16 15 14 46 46 H 1.09000 * 109.47643 * 295.81336 * 16 15 14 47 47 H 1.08997 * 109.47193 * 310.00447 * 17 15 14 48 48 H 1.09003 * 109.47106 * 70.00409 * 17 15 14 49 49 H 0.97000 * 119.99822 * 0.02562 * 20 18 17 50 50 H 0.97004 * 120.00432 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.8992 1.1287 5 6 4.6856 0.9005 1.1284 6 6 5.1874 1.7849 2.2405 7 8 4.3989 2.3583 2.9620 8 7 6.5124 1.9389 2.4333 9 6 7.5752 1.3984 1.5664 10 6 8.8192 1.2921 2.4834 11 6 8.6658 2.5599 3.3647 12 6 7.1372 2.6743 3.5425 13 1 6.8405 2.2325 4.4938 14 6 6.7163 4.1444 3.4945 15 7 7.3305 4.8665 4.6168 16 6 6.8218 4.3714 5.9028 17 6 7.1196 6.3147 4.4896 18 6 7.9615 7.0365 5.5100 19 8 8.6681 6.4065 6.2682 20 7 7.9300 8.3822 5.5793 21 6 8.6956 9.0387 6.5079 22 1 9.3242 8.4778 7.1837 23 6 8.6627 10.4261 6.5798 24 7 9.3969 11.0554 7.4695 25 14 7.5750 11.3963 5.4115 26 1 6.2339 11.5808 6.0219 27 1 8.1878 12.7239 5.1522 28 1 7.4387 10.6555 4.1316 29 1 -1.0502 0.0000 -0.0004 30 1 3.0092 0.3773 -0.9562 31 1 3.0098 -1.0155 0.1523 32 1 2.7923 0.5227 2.0850 33 1 2.7917 1.9154 0.9766 34 1 5.0484 1.2772 0.1722 35 1 5.0497 -0.1157 1.2804 36 1 7.2951 0.4140 1.1914 37 1 7.7718 2.0790 0.7379 38 1 9.7391 1.3308 1.9001 39 1 8.7811 0.3875 3.0903 40 1 9.0611 3.4365 2.8514 41 1 9.1569 2.4216 4.3279 42 1 7.0460 4.5863 2.5542 43 1 5.6310 4.2143 3.5680 44 1 6.9870 3.2960 5.9691 45 1 7.3467 4.8704 6.7175 46 1 5.7546 4.5803 5.9762 47 1 7.4060 6.6371 3.4885 48 1 6.0675 6.5449 4.6583 49 1 7.3652 8.8860 4.9726 50 1 9.3743 12.0239 7.5195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275100960.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:48 Heat of formation + Delta-G solvation = -9.863534 kcal Electronic energy + Delta-G solvation = -28679.595257 eV Core-core repulsion = 24708.546903 eV Total energy + Delta-G solvation = -3971.048354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.54640 -38.74495 -37.91454 -36.12251 -35.90215 -33.86679 -32.78788 -31.74150 -31.63977 -30.51033 -28.23150 -27.80833 -26.30939 -24.65440 -23.78860 -22.34055 -21.92799 -20.54828 -19.34800 -19.12465 -18.45213 -18.16060 -17.28380 -16.83525 -16.18542 -15.89617 -15.28346 -15.21645 -14.88036 -14.71423 -14.51716 -14.22307 -14.09233 -13.75856 -13.41460 -13.30823 -13.21309 -13.00991 -12.93887 -12.56840 -12.45225 -12.35993 -11.97799 -11.90840 -11.66086 -11.40358 -11.37579 -11.32813 -11.28131 -10.97440 -10.90063 -10.72619 -10.58514 -10.56396 -10.45804 -9.98224 -9.94604 -9.50236 -8.91013 -8.47503 -8.14389 -7.86742 -6.28027 -3.78998 2.41047 2.42116 2.49654 2.72109 3.05469 3.09737 3.17452 3.78867 3.94744 4.05674 4.13310 4.17925 4.33884 4.56204 4.59238 4.66775 4.72219 4.85722 4.90366 5.00015 5.04572 5.10548 5.18715 5.19965 5.23288 5.24903 5.35778 5.50718 5.58052 5.65309 5.67314 5.70887 5.73888 5.79358 5.82840 5.90061 5.91062 5.94376 5.99484 6.05483 6.18298 6.28515 6.58272 7.20402 7.27581 7.30810 7.37568 7.62390 7.96437 8.18278 8.64169 8.98867 9.46328 9.88045 10.85155 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.002175 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.246035 B =12869.992334 C =14189.553810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 C -0.013 4.013 4 C -0.101 4.101 5 C -0.136 4.136 6 C 0.525 3.475 7 O -0.534 6.534 8 N -0.617 5.617 9 C 0.099 3.901 10 C -0.138 4.138 11 C -0.112 4.112 12 C 0.141 3.859 13 H 0.077 0.923 14 C 0.044 3.956 15 N -0.513 5.513 16 C 0.020 3.980 17 C 0.044 3.956 18 C 0.456 3.544 19 O -0.558 6.558 20 N -0.593 5.593 21 C -0.303 4.303 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.883 5.883 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.216 0.784 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.059 0.941 45 H 0.097 0.903 46 H 0.016 0.984 47 H 0.087 0.913 48 H 0.048 0.952 49 H 0.370 0.630 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.557 -23.535 -18.812 31.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.187 4.187 3 C -0.049 4.049 4 C -0.139 4.139 5 C -0.176 4.176 6 C 0.314 3.686 7 O -0.411 6.411 8 N -0.352 5.352 9 C -0.024 4.024 10 C -0.176 4.176 11 C -0.150 4.150 12 C 0.038 3.962 13 H 0.095 0.905 14 C -0.085 4.085 15 N -0.237 5.237 16 C -0.128 4.128 17 C -0.087 4.087 18 C 0.241 3.759 19 O -0.440 6.440 20 N -0.232 5.232 21 C -0.431 4.431 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.705 3.295 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.233 0.767 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.035 0.965 47 H 0.105 0.895 48 H 0.066 0.934 49 H 0.202 0.798 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.003 -23.546 -17.826 30.875 hybrid contribution -1.867 1.167 -0.957 2.401 sum -10.870 -22.379 -18.783 31.174 Atomic orbital electron populations 1.24944 0.96045 1.00919 1.00789 1.23082 0.94577 1.00514 1.00555 1.18753 0.84937 1.01204 1.00019 1.21298 0.92881 1.00905 0.98769 1.21661 0.97295 1.00422 0.98176 1.20361 0.80527 0.81962 0.85743 1.90733 1.54320 1.48046 1.47984 1.48651 1.05084 1.53671 1.27840 1.22361 0.87510 0.98830 0.93666 1.22841 0.97267 0.99206 0.98258 1.22565 0.93480 0.97637 1.01346 1.21588 0.93214 0.91614 0.89778 0.90470 1.22456 0.98114 0.93199 0.94738 1.61559 1.57842 1.02242 1.02070 1.22593 0.97173 1.00316 0.92728 1.21888 0.98271 0.88567 1.00020 1.19632 0.86580 0.82385 0.87287 1.90513 1.43373 1.65765 1.44356 1.42218 1.41732 1.05594 1.33698 1.19424 1.21602 0.90118 1.12003 0.86266 1.25027 0.97538 0.96334 0.97292 1.69620 1.39329 1.09132 1.34193 0.86684 0.81157 0.80654 0.80973 1.19691 1.20208 1.19504 0.76681 0.89475 0.89502 0.90673 0.90653 0.88750 0.88721 0.90621 0.91157 0.89737 0.90735 0.89835 0.89494 0.91145 0.93348 0.92216 0.88488 0.96522 0.89474 0.93382 0.79756 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.64 19.25 29.55 0.57 -1.08 16 2 C -0.19 -1.58 13.34 -37.12 -0.50 -2.07 16 3 C -0.01 -0.07 5.70 -29.52 -0.17 -0.24 16 4 C -0.10 -0.76 4.46 -26.73 -0.12 -0.88 16 5 C -0.14 -0.86 4.63 -27.88 -0.13 -0.98 16 6 C 0.53 5.63 7.67 -10.99 -0.08 5.54 16 7 O -0.53 -8.04 14.81 5.55 0.08 -7.96 16 8 N -0.62 -5.99 3.06 -163.02 -0.50 -6.49 16 9 C 0.10 0.62 6.74 -2.53 -0.02 0.60 16 10 C -0.14 -0.91 7.09 -24.58 -0.17 -1.09 16 11 C -0.11 -1.13 6.18 -24.90 -0.15 -1.28 16 12 C 0.14 1.66 2.78 -66.96 -0.19 1.47 16 13 H 0.08 1.01 6.38 -51.93 -0.33 0.68 16 14 C 0.04 0.61 4.30 -3.82 -0.02 0.60 16 15 N -0.51 -8.54 4.20 -244.36 -1.03 -9.57 16 16 C 0.02 0.33 9.01 60.06 0.54 0.87 16 17 C 0.04 0.79 5.45 -4.97 -0.03 0.76 16 18 C 0.46 10.52 7.51 -10.98 -0.08 10.44 16 19 O -0.56 -14.87 13.89 5.55 0.08 -14.80 16 20 N -0.59 -14.39 5.09 -10.96 -0.06 -14.45 16 21 C -0.30 -8.64 10.16 -14.93 -0.15 -8.80 16 22 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -26.00 13.96 55.50 0.77 -25.23 16 25 Si 0.88 19.72 27.74 -169.99 -4.71 15.00 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 28 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 29 H 0.22 1.00 7.80 -54.08 -0.42 0.57 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.40 7.97 -51.93 -0.41 -0.01 16 36 H 0.08 0.30 7.48 -51.93 -0.39 -0.09 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.92 7.83 -51.93 -0.41 0.51 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.93 7.93 -51.93 -0.41 0.52 16 43 H 0.05 0.77 6.64 -51.93 -0.34 0.42 16 44 H 0.06 0.89 6.21 -51.93 -0.32 0.57 16 45 H 0.10 1.94 5.89 -51.92 -0.31 1.64 16 46 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.09 1.37 7.95 -51.93 -0.41 0.96 16 48 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 49 H 0.37 7.96 5.76 -40.82 -0.24 7.73 16 50 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 406.24 15.07 6.12 6.12 Total: -1.00 -35.49 406.24 -8.23 -43.72 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -8.20 Total: 8.74 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -0.79 Total: 4.90 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.81 Total: -55.73 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.16 Total: -22.75 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.71 Total: 15.00 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.49 -8.23 -43.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275100960.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.856 kcal (2) G-P(sol) polarization free energy of solvation -35.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds