Wall clock time and date at job start Tue Mar 31 2020 18:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46788 * 231.48469 * 3 2 1 5 5 C 1.53002 * 109.47229 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47158 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99895 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99869 * 179.97438 * 6 5 4 9 9 C 1.47423 * 125.64721 * 5.56468 * 8 6 5 10 10 C 1.54914 * 104.83272 * 204.09089 * 9 8 6 11 11 C 1.55157 * 101.58046 * 322.99265 * 10 9 8 12 12 C 1.47021 * 125.65037 * 185.52080 * 8 6 5 13 13 H 1.09000 * 109.87926 * 59.56064 * 12 8 6 14 14 C 1.52999 * 109.88256 * 298.39603 * 12 8 6 15 15 N 1.46905 * 109.46914 * 179.22770 * 14 12 8 16 16 C 1.46894 * 111.00069 * 295.25466 * 15 14 12 17 17 C 1.46907 * 110.99714 * 171.30258 * 15 14 12 18 18 C 1.50703 * 109.46950 * 190.00033 * 17 15 14 19 19 O 1.21290 * 119.99939 * 0.02562 * 18 17 15 20 20 N 1.34780 * 119.99756 * 179.97438 * 18 17 15 21 21 C 1.37094 * 119.99528 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00713 * 0.02562 * 21 20 18 23 23 C 1.38957 * 119.99636 * 180.02562 * 21 20 18 24 24 N 1.31404 * 119.99831 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00074 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47202 * 89.99556 * 25 23 21 27 27 H 1.48500 * 109.47017 * 209.99865 * 25 23 21 28 28 H 1.48509 * 109.47082 * 329.99638 * 25 23 21 29 29 H 4.44649 * 5.63347 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47055 * 111.49002 * 3 2 1 31 31 H 1.08998 * 109.47246 * 351.47928 * 3 2 1 32 32 H 1.09005 * 109.47286 * 59.99825 * 4 3 2 33 33 H 1.09002 * 109.47400 * 300.00408 * 4 3 2 34 34 H 1.08992 * 109.47059 * 59.99686 * 5 4 3 35 35 H 1.09004 * 109.46615 * 299.99830 * 5 4 3 36 36 H 1.09000 * 110.37089 * 322.92996 * 9 8 6 37 37 H 1.09005 * 110.36730 * 85.25948 * 9 8 6 38 38 H 1.08991 * 111.00660 * 204.91649 * 10 9 8 39 39 H 1.09000 * 111.00565 * 81.06308 * 10 9 8 40 40 H 1.09001 * 110.72202 * 277.13156 * 11 10 9 41 41 H 1.09000 * 110.71810 * 153.86319 * 11 10 9 42 42 H 1.08999 * 109.47201 * 299.22889 * 14 12 8 43 43 H 1.09004 * 109.47159 * 59.23265 * 14 12 8 44 44 H 1.09002 * 109.46825 * 55.81786 * 16 15 14 45 45 H 1.09007 * 109.46826 * 175.80969 * 16 15 14 46 46 H 1.09000 * 109.47643 * 295.81336 * 16 15 14 47 47 H 1.08997 * 109.47193 * 310.00447 * 17 15 14 48 48 H 1.09003 * 109.47106 * 70.00409 * 17 15 14 49 49 H 0.97000 * 119.99822 * 0.02562 * 20 18 17 50 50 H 0.97004 * 120.00432 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.8992 1.1287 5 6 4.6856 0.9005 1.1284 6 6 5.1874 1.7849 2.2405 7 8 4.3989 2.3583 2.9620 8 7 6.5124 1.9389 2.4333 9 6 7.5752 1.3984 1.5664 10 6 8.8192 1.2921 2.4834 11 6 8.6658 2.5599 3.3647 12 6 7.1372 2.6743 3.5425 13 1 6.8405 2.2325 4.4938 14 6 6.7163 4.1444 3.4945 15 7 7.3305 4.8665 4.6168 16 6 6.8218 4.3714 5.9028 17 6 7.1196 6.3147 4.4896 18 6 7.9615 7.0365 5.5100 19 8 8.6681 6.4065 6.2682 20 7 7.9300 8.3822 5.5793 21 6 8.6956 9.0387 6.5079 22 1 9.3242 8.4778 7.1837 23 6 8.6627 10.4261 6.5798 24 7 9.3969 11.0554 7.4695 25 14 7.5750 11.3963 5.4115 26 1 6.2339 11.5808 6.0219 27 1 8.1878 12.7239 5.1522 28 1 7.4387 10.6555 4.1316 29 1 -1.0502 0.0000 -0.0004 30 1 3.0092 0.3773 -0.9562 31 1 3.0098 -1.0155 0.1523 32 1 2.7923 0.5227 2.0850 33 1 2.7917 1.9154 0.9766 34 1 5.0484 1.2772 0.1722 35 1 5.0497 -0.1157 1.2804 36 1 7.2951 0.4140 1.1914 37 1 7.7718 2.0790 0.7379 38 1 9.7391 1.3308 1.9001 39 1 8.7811 0.3875 3.0903 40 1 9.0611 3.4365 2.8514 41 1 9.1569 2.4216 4.3279 42 1 7.0460 4.5863 2.5542 43 1 5.6310 4.2143 3.5680 44 1 6.9870 3.2960 5.9691 45 1 7.3467 4.8704 6.7175 46 1 5.7546 4.5803 5.9762 47 1 7.4060 6.6371 3.4885 48 1 6.0675 6.5449 4.6583 49 1 7.3652 8.8860 4.9726 50 1 9.3743 12.0239 7.5195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275100960.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:47 Heat of formation + Delta-G solvation = -35.204993 kcal Electronic energy + Delta-G solvation = -28680.694145 eV Core-core repulsion = 24708.546903 eV Total energy + Delta-G solvation = -3972.147243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37332 -40.45177 -38.90309 -37.43589 -36.46706 -35.90208 -33.76354 -33.42870 -32.42824 -31.47853 -29.43555 -28.67860 -27.52523 -26.30074 -24.71625 -23.23434 -22.77321 -21.40526 -21.25942 -20.23913 -19.84177 -18.98494 -18.13109 -17.90439 -17.26642 -16.87854 -16.76270 -16.61038 -16.05304 -15.86476 -15.53200 -15.27042 -15.24322 -14.87975 -14.73683 -14.50184 -14.30545 -14.12116 -13.81680 -13.74137 -13.57037 -13.32833 -13.16432 -13.12068 -12.79382 -12.63901 -12.51088 -12.40874 -12.36917 -11.99521 -11.96490 -11.93251 -11.78909 -11.52502 -11.47980 -11.16421 -10.96438 -10.82067 -10.41367 -10.24063 -9.64789 -9.27443 -8.41736 -6.01982 1.28924 1.33810 1.42532 1.65195 1.79813 1.92831 1.93806 2.00565 2.21707 2.64900 3.13874 3.22253 3.48552 3.55651 3.71145 3.84751 3.91913 4.07154 4.08516 4.16245 4.24491 4.26820 4.33042 4.36156 4.43335 4.52382 4.53200 4.59762 4.65980 4.68007 4.69486 4.80248 4.80853 4.90849 5.05664 5.08977 5.13322 5.20742 5.21134 5.21914 5.33425 5.38994 5.47620 5.52281 5.84200 5.96233 6.07695 6.58923 6.59986 6.72540 6.87733 7.19990 7.38846 7.95538 8.75740 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.002175 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.246035 B =12869.992334 C =14189.553810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.215 4.215 3 C -0.009 4.009 4 C -0.095 4.095 5 C -0.123 4.123 6 C 0.516 3.484 7 O -0.589 6.589 8 N -0.615 5.615 9 C 0.096 3.904 10 C -0.128 4.128 11 C -0.112 4.112 12 C 0.141 3.859 13 H 0.056 0.944 14 C 0.054 3.946 15 N -0.522 5.522 16 C 0.029 3.971 17 C 0.054 3.946 18 C 0.455 3.545 19 O -0.600 6.600 20 N -0.593 5.593 21 C -0.326 4.326 22 H 0.058 0.942 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.962 3.038 26 H -0.260 1.260 27 H -0.273 1.273 28 H -0.233 1.233 29 H 0.237 0.763 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.029 0.971 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.017 0.983 47 H 0.119 0.881 48 H 0.067 0.933 49 H 0.388 0.612 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.580 -24.863 -23.262 35.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.215 4.215 3 C -0.045 4.045 4 C -0.133 4.133 5 C -0.163 4.163 6 C 0.307 3.693 7 O -0.470 6.470 8 N -0.349 5.349 9 C -0.025 4.025 10 C -0.166 4.166 11 C -0.150 4.150 12 C 0.037 3.963 13 H 0.074 0.926 14 C -0.074 4.074 15 N -0.247 5.247 16 C -0.120 4.120 17 C -0.078 4.078 18 C 0.243 3.757 19 O -0.484 6.484 20 N -0.235 5.235 21 C -0.455 4.455 22 H 0.076 0.924 23 C -0.213 4.213 24 N -0.574 5.574 25 Si 0.782 3.218 26 H -0.185 1.185 27 H -0.198 1.198 28 H -0.156 1.156 29 H 0.253 0.747 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.128 0.872 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.048 0.952 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.035 0.965 47 H 0.137 0.863 48 H 0.085 0.915 49 H 0.223 0.777 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.008 -24.919 -22.317 34.916 hybrid contribution -1.493 1.490 0.540 2.177 sum -11.501 -23.429 -21.776 33.991 Atomic orbital electron populations 1.25712 0.97174 1.00751 1.00557 1.23896 0.95948 1.00809 1.00876 1.18858 0.83517 1.02015 1.00104 1.21183 0.94098 0.99744 0.98325 1.21689 0.95896 1.01088 0.97579 1.21241 0.80302 0.81720 0.86075 1.90713 1.55745 1.50329 1.50174 1.48760 1.05635 1.52967 1.27562 1.22658 0.85855 1.00850 0.93107 1.22842 0.98623 0.97247 0.97853 1.22487 0.91820 0.99411 1.01325 1.21441 0.94510 0.90258 0.90105 0.92584 1.22429 0.96684 0.94473 0.93839 1.61530 1.58525 1.01934 1.02677 1.22417 0.96518 1.00916 0.92104 1.21832 0.97876 0.88708 0.99348 1.20695 0.85810 0.82032 0.87185 1.90504 1.45092 1.66660 1.46110 1.42040 1.41830 1.06106 1.33498 1.18999 1.22663 0.90743 1.13068 0.92414 1.26065 0.98970 0.96973 0.99256 1.69794 1.41264 1.09917 1.36392 0.85406 0.78500 0.78560 0.79336 1.18476 1.19763 1.15626 0.74666 0.87370 0.87356 0.93137 0.93131 0.85667 0.85619 0.87184 0.89674 0.87726 0.90267 0.90637 0.91165 0.89828 0.95227 0.90645 0.92024 0.96456 0.86281 0.91532 0.77680 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.34 19.25 74.32 1.43 -1.91 16 2 C -0.22 -3.37 13.34 31.13 0.42 -2.96 16 3 C -0.01 -0.08 5.70 28.79 0.16 0.08 16 4 C -0.10 -1.31 4.46 30.60 0.14 -1.17 16 5 C -0.12 -1.13 4.63 29.85 0.14 -0.99 16 6 C 0.52 10.14 7.67 87.66 0.67 10.81 16 7 O -0.59 -17.86 14.81 -3.04 -0.05 -17.90 16 8 N -0.62 -10.47 3.06 -788.06 -2.42 -12.89 16 9 C 0.10 0.78 6.74 86.86 0.59 1.36 16 10 C -0.13 -1.28 7.09 31.99 0.23 -1.05 16 11 C -0.11 -2.11 6.18 31.78 0.20 -1.92 16 12 C 0.14 3.18 2.78 45.34 0.13 3.31 16 13 H 0.06 1.49 6.38 -2.39 -0.02 1.48 16 14 C 0.05 1.46 4.30 86.30 0.37 1.84 16 15 N -0.52 -17.29 4.20 -927.01 -3.89 -21.19 16 16 C 0.03 1.00 9.01 127.69 1.15 2.15 16 17 C 0.05 1.84 5.45 85.56 0.47 2.31 16 18 C 0.46 21.36 7.51 87.66 0.66 22.02 16 19 O -0.60 -33.59 13.89 -3.06 -0.04 -33.63 16 20 N -0.59 -28.90 5.09 -306.98 -1.56 -30.46 16 21 C -0.33 -19.39 10.16 84.04 0.85 -18.53 16 22 H 0.06 4.07 7.39 -2.91 -0.02 4.04 16 23 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 24 N -0.93 -56.85 13.96 21.66 0.30 -56.55 16 25 Si 0.96 39.79 27.74 68.60 1.90 41.69 16 26 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 H -0.23 -8.20 6.52 99.48 0.65 -7.55 16 29 H 0.24 1.95 7.80 -4.41 -0.03 1.91 16 30 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.92 8.10 -2.38 -0.02 0.91 16 33 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.13 0.43 7.97 -2.38 -0.02 0.42 16 36 H 0.11 0.21 7.48 -2.39 -0.02 0.19 16 37 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 1.54 7.83 -2.39 -0.02 1.53 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 2.02 7.93 -2.39 -0.02 2.00 16 43 H 0.03 0.93 6.64 -2.39 -0.02 0.91 16 44 H 0.07 2.35 6.21 -2.39 -0.01 2.33 16 45 H 0.06 2.61 5.89 -2.38 -0.01 2.60 16 46 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.12 3.37 7.95 -2.39 -0.02 3.35 16 48 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 49 H 0.39 15.89 5.76 -92.71 -0.53 15.36 16 50 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -85.85 406.24 2.64 -83.21 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.33 Total: 32.68 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 8.06 Total: 15.03 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -7.57 Total: -121.08 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -0.09 Total: -51.54 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 1.90 Total: 41.69 kcal Total: -85.85 2.64 -83.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275100960.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.004 kcal (2) G-P(sol) polarization free energy of solvation -85.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds