Wall clock time and date at job start Tue Mar 31 2020 18:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47134 * 345.74860 * 3 2 1 5 5 C 1.53004 * 109.47289 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47234 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99861 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99969 * 179.97438 * 6 5 4 9 9 C 1.47421 * 125.64778 * 354.89520 * 8 6 5 10 10 C 1.54904 * 104.83128 * 155.82924 * 9 8 6 11 11 C 1.55156 * 101.58484 * 37.00776 * 10 9 8 12 12 C 1.47022 * 125.64447 * 174.57379 * 8 6 5 13 13 H 1.08994 * 109.88499 * 300.51884 * 12 8 6 14 14 C 1.52993 * 109.88172 * 61.68908 * 12 8 6 15 15 N 1.46900 * 109.47170 * 184.02128 * 14 12 8 16 16 C 1.46907 * 110.99596 * 72.10604 * 15 14 12 17 17 C 1.46900 * 111.00332 * 196.05604 * 15 14 12 18 18 C 1.50699 * 109.47134 * 169.99857 * 17 15 14 19 19 O 1.21289 * 120.00043 * 0.02562 * 18 17 15 20 20 N 1.34781 * 119.99894 * 179.97438 * 18 17 15 21 21 C 1.37095 * 120.00199 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99631 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00330 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00207 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 119.99537 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47393 * 89.99919 * 25 23 21 27 27 H 1.48508 * 109.46343 * 209.99554 * 25 23 21 28 28 H 1.48495 * 109.47482 * 329.99142 * 25 23 21 29 29 H 4.44649 * 5.63241 * 180.02562 * 4 1 2 30 30 H 1.08994 * 109.47118 * 225.74596 * 3 2 1 31 31 H 1.09004 * 109.46954 * 105.74885 * 3 2 1 32 32 H 1.09004 * 109.47220 * 299.99862 * 4 3 2 33 33 H 1.09003 * 109.47444 * 59.99715 * 4 3 2 34 34 H 1.08994 * 109.47011 * 300.00104 * 5 4 3 35 35 H 1.08997 * 109.46753 * 60.00219 * 5 4 3 36 36 H 1.09001 * 110.36326 * 274.66395 * 9 8 6 37 37 H 1.08997 * 110.36834 * 36.87585 * 9 8 6 38 38 H 1.09007 * 111.00591 * 155.08123 * 10 9 8 39 39 H 1.08997 * 111.00295 * 278.92794 * 10 9 8 40 40 H 1.08996 * 110.72070 * 82.86351 * 11 10 9 41 41 H 1.08999 * 110.71825 * 205.96175 * 11 10 9 42 42 H 1.09001 * 109.47527 * 304.02150 * 14 12 8 43 43 H 1.08999 * 109.47434 * 64.02198 * 14 12 8 44 44 H 1.09002 * 109.47473 * 54.76127 * 16 15 14 45 45 H 1.09005 * 109.46665 * 174.75572 * 16 15 14 46 46 H 1.08994 * 109.47119 * 294.75106 * 16 15 14 47 47 H 1.08998 * 109.47276 * 290.00226 * 17 15 14 48 48 H 1.09003 * 109.46549 * 49.99971 * 17 15 14 49 49 H 0.97006 * 119.99577 * 0.02562 * 20 18 17 50 50 H 0.96993 * 119.99908 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3971 0.3551 5 6 4.6866 -1.3967 0.3545 6 6 5.1896 -2.7734 0.7049 7 8 4.4018 -3.6671 0.9322 8 7 6.5148 -3.0117 0.7646 9 6 7.5770 -2.0531 0.4096 10 6 8.8201 -2.5269 1.2031 11 6 8.6689 -4.0693 1.1273 12 6 7.1404 -4.2686 1.2009 13 1 6.8432 -4.4948 2.2249 14 6 6.7218 -5.4087 0.2705 15 7 7.2731 -6.6755 0.7695 16 6 6.5725 -7.1122 1.9847 17 6 7.2262 -7.7149 -0.2675 18 6 8.0143 -8.9157 0.1888 19 8 8.5609 -8.9066 1.2715 20 7 8.1109 -10.0000 -0.6059 21 6 8.8283 -11.0922 -0.1911 22 1 9.3157 -11.0838 0.7726 23 6 8.9283 -12.2098 -1.0106 24 7 9.6155 -13.2569 -0.6128 25 14 8.0857 -12.2239 -2.6778 26 1 9.0158 -11.6938 -3.7069 27 1 7.7024 -13.6156 -3.0267 28 1 6.8693 -11.3739 -2.6249 29 1 -1.0498 -0.0004 -0.0001 30 1 3.0090 0.7179 0.7360 31 1 3.0092 0.2798 -0.9891 32 1 2.7934 -1.6763 1.3442 33 1 2.7936 -2.1145 -0.3810 34 1 5.0494 -1.1178 -0.6347 35 1 5.0500 -0.6794 1.0903 36 1 7.7754 -2.0865 -0.6617 37 1 7.2941 -1.0446 0.7110 38 1 9.7406 -2.2004 0.7189 39 1 8.7797 -2.1807 2.2358 40 1 9.0663 -4.4499 0.1864 41 1 9.1618 -4.5471 1.9739 42 1 5.6340 -5.4726 0.2407 43 1 7.1020 -5.2171 -0.7328 44 1 5.5017 -7.1649 1.7877 45 1 6.9364 -8.0963 2.2800 46 1 6.7596 -6.3996 2.7879 47 1 6.1906 -8.0057 -0.4439 48 1 7.6569 -7.3269 -1.1905 49 1 7.6733 -10.0073 -1.4716 50 1 9.6856 -14.0369 -1.1850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275100961.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:51 Heat of formation + Delta-G solvation = -10.527932 kcal Electronic energy + Delta-G solvation = -28675.537214 eV Core-core repulsion = 24704.460049 eV Total energy + Delta-G solvation = -3971.077165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.53074 -38.74299 -37.90202 -36.11891 -35.89933 -33.86878 -32.78801 -31.73798 -31.64227 -30.51158 -28.21640 -27.85261 -26.24444 -24.65449 -23.78457 -22.33011 -21.91188 -20.58203 -19.35580 -19.13069 -18.45544 -18.15715 -17.25473 -16.82565 -16.17452 -15.89960 -15.28481 -15.20254 -14.88110 -14.71323 -14.52445 -14.24050 -14.05081 -13.75352 -13.41624 -13.30639 -13.19818 -13.00553 -12.92012 -12.55797 -12.43258 -12.37659 -11.97545 -11.92719 -11.67376 -11.40399 -11.37633 -11.33525 -11.26811 -10.99681 -10.86403 -10.73313 -10.58283 -10.56895 -10.45659 -9.96588 -9.94774 -9.50367 -8.91949 -8.46027 -8.14266 -7.88149 -6.28236 -3.79246 2.41762 2.42449 2.49782 2.72727 3.05405 3.09102 3.17116 3.78476 3.95080 4.06285 4.13064 4.18327 4.34145 4.56444 4.59742 4.67130 4.72466 4.85675 4.91572 5.00350 5.04808 5.10837 5.18924 5.20641 5.24992 5.25460 5.35675 5.50694 5.59230 5.66221 5.67649 5.70873 5.73376 5.79322 5.82036 5.90563 5.93488 5.95447 6.00295 6.06170 6.17826 6.28795 6.57186 7.21250 7.27720 7.31467 7.38281 7.62240 7.97224 8.18026 8.63923 8.98629 9.46071 9.87705 10.84978 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.002150 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.343687 B =13022.648102 C =14164.537165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 C -0.013 4.013 4 C -0.101 4.101 5 C -0.136 4.136 6 C 0.525 3.475 7 O -0.534 6.534 8 N -0.618 5.618 9 C 0.099 3.901 10 C -0.138 4.138 11 C -0.112 4.112 12 C 0.144 3.856 13 H 0.077 0.923 14 C 0.044 3.956 15 N -0.514 5.514 16 C 0.023 3.977 17 C 0.044 3.956 18 C 0.455 3.545 19 O -0.558 6.558 20 N -0.593 5.593 21 C -0.303 4.303 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.216 0.784 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.069 0.931 44 H 0.017 0.983 45 H 0.094 0.906 46 H 0.059 0.941 47 H 0.048 0.952 48 H 0.087 0.913 49 H 0.370 0.630 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.549 30.044 -1.623 31.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.187 4.187 3 C -0.049 4.049 4 C -0.139 4.139 5 C -0.176 4.176 6 C 0.314 3.686 7 O -0.411 6.411 8 N -0.353 5.353 9 C -0.024 4.024 10 C -0.176 4.176 11 C -0.150 4.150 12 C 0.040 3.960 13 H 0.095 0.905 14 C -0.085 4.085 15 N -0.238 5.238 16 C -0.125 4.125 17 C -0.087 4.087 18 C 0.241 3.759 19 O -0.440 6.440 20 N -0.232 5.232 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.705 3.295 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.233 0.767 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.035 0.965 45 H 0.112 0.888 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.105 0.895 49 H 0.202 0.798 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.109 29.433 -0.682 30.818 hybrid contribution -1.630 -0.308 -1.698 2.374 sum -10.739 29.125 -2.380 31.133 Atomic orbital electron populations 1.24936 0.96044 1.00598 1.01120 1.23082 0.94578 1.00613 1.00447 1.18752 0.84935 0.98225 1.03005 1.21296 0.92881 0.95725 1.03948 1.21663 0.97287 0.94755 1.03857 1.20358 0.80533 0.90640 0.77074 1.90733 1.54373 1.46565 1.49396 1.48653 1.05070 1.15087 1.66464 1.22353 0.87551 0.92832 0.99630 1.22841 0.97250 0.96754 1.00730 1.22563 0.93591 0.94447 1.04430 1.21528 0.93045 0.83043 0.98348 0.90474 1.22482 0.98712 0.89613 0.97713 1.61489 1.55445 1.01734 1.05116 1.22548 0.94707 1.03380 0.91847 1.21885 0.99007 0.92682 0.95176 1.19638 0.85820 0.83906 0.86576 1.90525 1.49448 1.81830 1.22157 1.42223 1.48275 1.14927 1.17819 1.19423 1.27246 0.90765 1.05724 0.86269 1.25026 0.97419 0.95422 0.98314 1.69618 1.40195 1.04948 1.37510 0.86685 0.79831 0.78487 0.84474 1.19633 1.20224 1.19538 0.76689 0.89502 0.89482 0.90666 0.90660 0.88766 0.88730 0.91195 0.90641 0.89763 0.90707 0.90049 0.89420 0.93150 0.91263 0.96496 0.88785 0.92178 0.93428 0.89468 0.79762 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.65 19.25 29.55 0.57 -1.08 16 2 C -0.19 -1.58 13.34 -37.12 -0.50 -2.07 16 3 C -0.01 -0.07 5.70 -29.52 -0.17 -0.24 16 4 C -0.10 -0.76 4.46 -26.73 -0.12 -0.88 16 5 C -0.14 -0.86 4.63 -27.88 -0.13 -0.99 16 6 C 0.53 5.64 7.67 -10.98 -0.08 5.56 16 7 O -0.53 -8.06 14.77 5.56 0.08 -7.98 16 8 N -0.62 -6.02 3.07 -163.03 -0.50 -6.52 16 9 C 0.10 0.62 6.74 -2.53 -0.02 0.60 16 10 C -0.14 -0.92 7.08 -24.59 -0.17 -1.09 16 11 C -0.11 -1.13 6.25 -24.90 -0.16 -1.28 16 12 C 0.14 1.70 2.95 -66.96 -0.20 1.50 16 13 H 0.08 1.04 6.73 -51.93 -0.35 0.69 16 14 C 0.04 0.61 4.36 -3.83 -0.02 0.60 16 15 N -0.51 -8.58 4.23 -244.37 -1.03 -9.61 16 16 C 0.02 0.40 9.00 60.07 0.54 0.94 16 17 C 0.04 0.78 5.44 -4.98 -0.03 0.75 16 18 C 0.45 10.49 7.42 -10.98 -0.08 10.41 16 19 O -0.56 -14.88 13.96 5.55 0.08 -14.80 16 20 N -0.59 -14.35 5.09 -10.96 -0.06 -14.40 16 21 C -0.30 -8.64 10.16 -14.94 -0.15 -8.79 16 22 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.98 13.96 55.50 0.77 -25.20 16 25 Si 0.88 19.66 27.74 -169.99 -4.71 14.94 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.27 -5.56 6.52 56.52 0.37 -5.19 16 29 H 0.22 1.00 7.80 -54.10 -0.42 0.58 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.41 7.96 -51.93 -0.41 -0.01 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.30 7.47 -51.93 -0.39 -0.09 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.87 7.79 -51.93 -0.40 0.47 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.80 6.38 -51.93 -0.33 0.47 16 43 H 0.07 0.90 7.71 -51.93 -0.40 0.50 16 44 H 0.02 0.28 8.01 -51.93 -0.42 -0.14 16 45 H 0.09 1.90 5.79 -51.93 -0.30 1.60 16 46 H 0.06 0.94 6.84 -51.93 -0.35 0.58 16 47 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 48 H 0.09 1.34 7.86 -51.93 -0.41 0.93 16 49 H 0.37 7.93 5.76 -40.82 -0.24 7.69 16 50 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 406.60 15.07 6.13 6.13 Total: -1.00 -35.50 406.60 -8.25 -43.75 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -8.20 Total: 8.73 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -0.80 Total: 4.96 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.81 Total: -55.73 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.16 Total: -22.78 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.71 Total: 14.94 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.50 -8.25 -43.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275100961.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.223 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds