Wall clock time and date at job start Tue Mar 31 2020 18:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00440 * 2 1 4 4 O 1.21275 * 120.00461 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99761 * 359.97438 * 3 2 1 6 6 H 1.09000 * 109.76902 * 60.45557 * 5 3 2 7 7 C 1.53302 * 109.62067 * 300.00329 * 5 3 2 8 8 C 1.52870 * 108.59442 * 165.82769 * 7 5 3 9 9 C 1.52073 * 110.51255 * 54.89005 * 8 7 5 10 10 H 1.09002 * 114.63641 * 194.37194 * 9 8 7 11 11 C 1.52304 * 119.83911 * 49.55356 * 9 8 7 12 12 C 1.51367 * 60.09889 * 250.58281 * 11 9 8 13 13 H 1.09002 * 115.85093 * 251.98801 * 12 11 9 14 14 C 1.52544 * 117.53092 * 111.35206 * 12 11 9 15 15 C 1.46499 * 119.99903 * 179.97438 * 2 1 3 16 16 C 1.53941 * 113.73232 * 36.73240 * 15 2 1 17 17 N 1.47959 * 86.17983 * 221.92054 * 16 15 2 18 18 C 1.46905 * 111.00098 * 137.58446 * 17 16 15 19 19 C 1.50694 * 109.47107 * 70.63826 * 18 17 16 20 20 O 1.21298 * 120.00122 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00159 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00570 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99431 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00335 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99734 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00037 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47397 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47357 * 120.00400 * 26 24 22 29 29 H 1.48496 * 109.47400 * 240.00363 * 26 24 22 30 30 C 1.47961 * 90.76632 * 24.68782 * 17 16 15 31 31 H 1.09004 * 109.46488 * 90.00191 * 1 2 3 32 32 H 1.08993 * 109.47068 * 210.00105 * 1 2 3 33 33 H 1.08997 * 109.47062 * 330.00632 * 1 2 3 34 34 H 1.09005 * 109.61529 * 46.09558 * 7 5 3 35 35 H 1.08999 * 109.61449 * 285.56045 * 7 5 3 36 36 H 1.09000 * 109.26574 * 294.62474 * 8 7 5 37 37 H 1.08994 * 109.26763 * 175.15472 * 8 7 5 38 38 H 1.09000 * 117.53948 * 358.29205 * 11 9 8 39 39 H 1.08994 * 117.53975 * 143.54463 * 11 9 8 40 40 H 1.08992 * 110.04917 * 149.85072 * 14 12 11 41 41 H 1.08998 * 108.21871 * 30.40127 * 14 12 11 42 42 H 1.08999 * 112.94158 * 168.43666 * 15 2 1 43 43 H 1.09000 * 113.76054 * 336.23814 * 16 15 2 44 44 H 1.08995 * 113.75714 * 107.60218 * 16 15 2 45 45 H 1.09002 * 109.47248 * 190.64408 * 18 17 16 46 46 H 1.09000 * 109.46750 * 310.63611 * 18 17 16 47 47 H 0.97006 * 119.99365 * 0.02562 * 21 19 18 48 48 H 0.97001 * 119.99565 * 179.97438 * 25 24 22 49 49 H 1.08999 * 113.76364 * 220.99340 * 30 17 16 50 50 H 1.09006 * 113.85586 * 89.63603 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 1 0.7628 2.5389 0.8915 7 6 0.5033 2.5568 -1.2514 8 6 -0.5008 3.6941 -1.0638 9 6 0.2202 4.9936 -0.7412 10 1 -0.4217 5.7856 -0.3552 11 6 1.3893 5.4465 -1.6058 12 6 1.6385 4.9611 -0.1939 13 1 1.9115 5.7280 0.5311 14 6 2.3759 3.6367 -0.0234 15 6 2.1975 -1.2687 0.0006 16 6 1.5292 -2.3704 -0.8418 17 7 1.8707 -3.2880 0.2675 18 6 0.7553 -4.1980 0.5604 19 6 0.6093 -5.1916 -0.5631 20 8 1.3609 -5.1466 -1.5141 21 7 -0.3563 -6.1304 -0.5112 22 6 -0.4895 -7.0341 -1.5335 23 1 0.1797 -6.9940 -2.3803 24 6 -1.4847 -8.0023 -1.4798 25 7 -2.2986 -8.0514 -0.4492 26 14 -1.6657 -9.2340 -2.8724 27 1 -0.6336 -8.9674 -3.9064 28 1 -1.4905 -10.6100 -2.3422 29 1 -3.0163 -9.1043 -3.4757 30 6 1.8970 -2.1571 1.2213 31 1 -0.3632 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 -0.0304 1.6161 -1.3871 35 1 1.1244 2.7573 -2.1244 36 1 -1.1772 3.4454 -0.2461 37 1 -1.0767 3.8204 -1.9805 38 1 1.6918 4.7950 -2.4257 39 1 1.4958 6.5155 -1.7896 40 1 2.9467 3.6436 0.9051 41 1 3.0572 3.5151 -0.8655 42 1 3.2616 -1.1451 -0.2007 43 1 0.4574 -2.2282 -0.9799 44 1 2.0534 -2.5911 -1.7715 45 1 0.9542 -4.7288 1.4915 46 1 -0.1658 -3.6235 0.6594 47 1 -0.9576 -6.1662 0.2492 48 1 -2.9936 -8.7270 -0.4119 49 1 2.7151 -2.2075 1.9398 50 1 0.9336 -1.9513 1.6877 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277618464.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:13 Heat of formation + Delta-G solvation = -7.641893 kcal Electronic energy + Delta-G solvation = -29280.028266 eV Core-core repulsion = 25309.076249 eV Total energy + Delta-G solvation = -3970.952017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.14779 -40.03832 -38.69035 -37.65578 -35.29966 -33.94492 -33.44626 -31.31103 -31.18347 -29.95949 -27.29973 -26.19787 -25.92743 -25.09864 -24.08091 -23.04072 -21.44627 -20.33173 -19.30647 -19.08116 -18.77354 -17.93430 -17.27427 -16.86955 -16.35786 -16.12664 -15.76699 -15.21200 -14.68142 -14.64562 -14.43973 -14.21875 -14.08249 -13.91330 -13.79453 -13.27598 -13.14527 -12.94544 -12.76258 -12.55547 -12.42006 -12.35946 -12.07405 -11.86261 -11.70300 -11.60470 -11.52930 -11.38440 -11.12764 -11.02493 -10.78704 -10.60087 -10.36245 -10.24698 -10.18444 -10.01339 -9.78524 -9.54170 -8.77695 -8.71818 -8.27696 -7.99227 -6.44559 -3.85275 2.44365 2.73438 3.14272 3.25205 3.32533 3.39389 3.85953 3.99082 4.09986 4.21230 4.31336 4.37477 4.49777 4.53323 4.60591 4.72328 4.76066 4.79462 4.87128 4.95976 5.03684 5.12195 5.15537 5.19013 5.26705 5.30060 5.33317 5.39424 5.43209 5.47022 5.57272 5.63659 5.69924 5.72468 5.73503 5.77433 5.83977 5.88854 5.92487 5.96802 5.99922 6.16471 6.22668 6.36363 6.56807 7.11175 7.22824 7.52941 8.01052 8.03142 8.58335 9.15393 9.50976 10.02620 10.73249 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022117 B = 0.002094 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.707065 B =13368.737237 C =13985.571932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.605 5.605 3 C 0.519 3.481 4 O -0.538 6.538 5 C -0.103 4.103 6 H 0.099 0.901 7 C -0.128 4.128 8 C -0.085 4.085 9 C -0.145 4.145 10 H 0.099 0.901 11 C -0.180 4.180 12 C -0.147 4.147 13 H 0.100 0.900 14 C -0.069 4.069 15 C 0.113 3.887 16 C 0.013 3.987 17 N -0.448 5.448 18 C 0.014 3.986 19 C 0.443 3.557 20 O -0.578 6.578 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 C -0.013 4.013 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.128 0.872 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.052 0.948 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.093 0.907 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 25.575 4.196 25.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.338 5.338 3 C 0.308 3.692 4 O -0.414 6.414 5 C -0.124 4.124 6 H 0.117 0.883 7 C -0.165 4.165 8 C -0.123 4.123 9 C -0.163 4.163 10 H 0.117 0.883 11 C -0.217 4.217 12 C -0.165 4.165 13 H 0.118 0.882 14 C -0.107 4.107 15 C 0.009 3.991 16 C -0.116 4.116 17 N -0.171 5.171 18 C -0.119 4.119 19 C 0.228 3.772 20 O -0.461 6.461 21 N -0.201 5.201 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 C -0.144 4.144 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.146 0.854 43 H 0.089 0.911 44 H 0.118 0.882 45 H 0.110 0.890 46 H 0.070 0.930 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.111 0.889 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.973 25.009 3.527 25.334 hybrid contribution -1.547 -0.335 0.071 1.584 sum 0.427 24.674 3.599 24.939 Atomic orbital electron populations 1.21979 0.79738 1.03284 1.02164 1.47914 1.06833 1.05852 1.73185 1.20710 0.87943 0.85223 0.75369 1.90693 1.14009 1.87352 1.49376 1.21321 0.98036 0.92312 1.00710 0.88272 1.21916 0.97762 1.00064 0.96800 1.20826 0.97189 0.92216 1.02022 1.21827 0.90593 0.99463 1.04415 0.88304 1.22783 1.03042 1.01353 0.94533 1.21824 0.98128 0.99067 0.97469 0.88169 1.20798 0.96218 0.90116 1.03557 1.23242 0.98823 0.80760 0.96268 1.24249 0.99881 0.89668 0.97817 1.68368 1.37039 1.08548 1.03139 1.22444 0.93098 0.96469 0.99841 1.19669 0.84220 0.84643 0.88656 1.90533 1.45473 1.74635 1.35496 1.41874 1.29028 1.27637 1.21587 1.19747 1.14827 1.07697 1.00452 0.87871 1.25265 0.95917 0.98644 0.98181 1.69620 1.19187 1.35843 1.29686 0.85799 0.78190 0.79755 0.80609 1.19209 1.20727 1.20763 1.24502 1.01940 0.91182 0.96735 0.91690 0.90939 0.90531 0.89828 0.91160 0.91159 0.91012 0.88685 0.89045 0.90790 0.90817 0.85435 0.91107 0.88197 0.88994 0.92960 0.77521 0.91923 0.88862 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 7.42 59.85 0.44 1.00 16 2 N -0.61 -6.56 3.09 -175.27 -0.54 -7.11 16 3 C 0.52 6.07 7.09 -10.99 -0.08 5.99 16 4 O -0.54 -8.32 15.41 5.56 0.09 -8.23 16 5 C -0.10 -0.85 1.69 -91.68 -0.16 -1.01 16 6 H 0.10 0.70 7.34 -51.93 -0.38 0.32 16 7 C -0.13 -0.91 4.60 -26.64 -0.12 -1.03 16 8 C -0.09 -0.49 5.93 -27.27 -0.16 -0.66 16 9 C -0.14 -0.91 6.09 -91.92 -0.56 -1.47 16 10 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 11 C -0.18 -1.21 9.59 -27.91 -0.27 -1.47 16 12 C -0.15 -1.03 6.02 -92.15 -0.56 -1.59 16 13 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 14 C -0.07 -0.60 4.51 -27.03 -0.12 -0.72 16 15 C 0.11 1.48 4.39 -69.62 -0.31 1.18 16 16 C 0.01 0.20 6.17 -2.76 -0.02 0.19 16 17 N -0.45 -7.46 5.95 -239.88 -1.43 -8.88 16 18 C 0.01 0.24 5.31 -4.98 -0.03 0.21 16 19 C 0.44 10.38 7.59 -10.99 -0.08 10.29 16 20 O -0.58 -15.62 15.13 5.54 0.08 -15.54 16 21 N -0.56 -14.16 5.29 -10.96 -0.06 -14.21 16 22 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 23 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 26 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 30 C -0.01 -0.17 7.49 -2.76 -0.02 -0.19 16 31 H 0.06 0.48 6.75 -51.93 -0.35 0.13 16 32 H 0.07 0.58 6.36 -51.93 -0.33 0.25 16 33 H 0.08 0.43 6.15 -51.93 -0.32 0.11 16 34 H 0.08 0.56 4.50 -51.93 -0.23 0.33 16 35 H 0.07 0.57 7.12 -51.93 -0.37 0.20 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.69 7.28 -51.93 -0.38 0.31 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 42 H 0.13 1.90 7.24 -51.93 -0.38 1.52 16 43 H 0.07 1.03 6.35 -51.93 -0.33 0.70 16 44 H 0.10 1.75 8.09 -51.93 -0.42 1.33 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.05 0.79 7.69 -51.93 -0.40 0.39 16 47 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 50 H 0.07 0.77 6.63 -51.93 -0.34 0.43 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -32.90 385.71 -10.47 -43.37 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -7.85 Total: 9.64 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -2.27 Total: 2.81 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -1.30 Total: -53.77 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.17 Total: -23.77 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.90 -10.47 -43.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277618464.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.728 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds