Wall clock time and date at job start Tue Mar 31 2020 18:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00440 * 2 1 4 4 O 1.21275 * 120.00461 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99761 * 359.97438 * 3 2 1 6 6 H 1.09000 * 109.76902 * 60.45557 * 5 3 2 7 7 C 1.53302 * 109.62067 * 300.00329 * 5 3 2 8 8 C 1.52870 * 108.59442 * 165.82769 * 7 5 3 9 9 C 1.52073 * 110.51255 * 54.89005 * 8 7 5 10 10 H 1.09002 * 114.63641 * 194.37194 * 9 8 7 11 11 C 1.52304 * 119.83911 * 49.55356 * 9 8 7 12 12 C 1.51367 * 60.09889 * 250.58281 * 11 9 8 13 13 H 1.09002 * 115.85093 * 251.98801 * 12 11 9 14 14 C 1.52544 * 117.53092 * 111.35206 * 12 11 9 15 15 C 1.46499 * 119.99903 * 179.97438 * 2 1 3 16 16 C 1.53941 * 113.73232 * 36.73240 * 15 2 1 17 17 N 1.47959 * 86.17983 * 221.92054 * 16 15 2 18 18 C 1.46905 * 111.00098 * 137.58446 * 17 16 15 19 19 C 1.50694 * 109.47107 * 70.63826 * 18 17 16 20 20 O 1.21298 * 120.00122 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00159 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00570 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99431 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00335 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99734 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00037 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47397 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47357 * 120.00400 * 26 24 22 29 29 H 1.48496 * 109.47400 * 240.00363 * 26 24 22 30 30 C 1.47961 * 90.76632 * 24.68782 * 17 16 15 31 31 H 1.09004 * 109.46488 * 90.00191 * 1 2 3 32 32 H 1.08993 * 109.47068 * 210.00105 * 1 2 3 33 33 H 1.08997 * 109.47062 * 330.00632 * 1 2 3 34 34 H 1.09005 * 109.61529 * 46.09558 * 7 5 3 35 35 H 1.08999 * 109.61449 * 285.56045 * 7 5 3 36 36 H 1.09000 * 109.26574 * 294.62474 * 8 7 5 37 37 H 1.08994 * 109.26763 * 175.15472 * 8 7 5 38 38 H 1.09000 * 117.53948 * 358.29205 * 11 9 8 39 39 H 1.08994 * 117.53975 * 143.54463 * 11 9 8 40 40 H 1.08992 * 110.04917 * 149.85072 * 14 12 11 41 41 H 1.08998 * 108.21871 * 30.40127 * 14 12 11 42 42 H 1.08999 * 112.94158 * 168.43666 * 15 2 1 43 43 H 1.09000 * 113.76054 * 336.23814 * 16 15 2 44 44 H 1.08995 * 113.75714 * 107.60218 * 16 15 2 45 45 H 1.09002 * 109.47248 * 190.64408 * 18 17 16 46 46 H 1.09000 * 109.46750 * 310.63611 * 18 17 16 47 47 H 0.97006 * 119.99365 * 0.02562 * 21 19 18 48 48 H 0.97001 * 119.99565 * 179.97438 * 25 24 22 49 49 H 1.08999 * 113.76364 * 220.99340 * 30 17 16 50 50 H 1.09006 * 113.85586 * 89.63603 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 1 0.7628 2.5389 0.8915 7 6 0.5033 2.5568 -1.2514 8 6 -0.5008 3.6941 -1.0638 9 6 0.2202 4.9936 -0.7412 10 1 -0.4217 5.7856 -0.3552 11 6 1.3893 5.4465 -1.6058 12 6 1.6385 4.9611 -0.1939 13 1 1.9115 5.7280 0.5311 14 6 2.3759 3.6367 -0.0234 15 6 2.1975 -1.2687 0.0006 16 6 1.5292 -2.3704 -0.8418 17 7 1.8707 -3.2880 0.2675 18 6 0.7553 -4.1980 0.5604 19 6 0.6093 -5.1916 -0.5631 20 8 1.3609 -5.1466 -1.5141 21 7 -0.3563 -6.1304 -0.5112 22 6 -0.4895 -7.0341 -1.5335 23 1 0.1797 -6.9940 -2.3803 24 6 -1.4847 -8.0023 -1.4798 25 7 -2.2986 -8.0514 -0.4492 26 14 -1.6657 -9.2340 -2.8724 27 1 -0.6336 -8.9674 -3.9064 28 1 -1.4905 -10.6100 -2.3422 29 1 -3.0163 -9.1043 -3.4757 30 6 1.8970 -2.1571 1.2213 31 1 -0.3632 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 -0.0304 1.6161 -1.3871 35 1 1.1244 2.7573 -2.1244 36 1 -1.1772 3.4454 -0.2461 37 1 -1.0767 3.8204 -1.9805 38 1 1.6918 4.7950 -2.4257 39 1 1.4958 6.5155 -1.7896 40 1 2.9467 3.6436 0.9051 41 1 3.0572 3.5151 -0.8655 42 1 3.2616 -1.1451 -0.2007 43 1 0.4574 -2.2282 -0.9799 44 1 2.0534 -2.5911 -1.7715 45 1 0.9542 -4.7288 1.4915 46 1 -0.1658 -3.6235 0.6594 47 1 -0.9576 -6.1662 0.2492 48 1 -2.9936 -8.7270 -0.4119 49 1 2.7151 -2.2075 1.9398 50 1 0.9336 -1.9513 1.6877 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277618464.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:12 Heat of formation + Delta-G solvation = -30.905354 kcal Electronic energy + Delta-G solvation = -29281.037045 eV Core-core repulsion = 25309.076249 eV Total energy + Delta-G solvation = -3971.960796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.07774 -41.03053 -39.83512 -39.15944 -36.29955 -35.88975 -34.17035 -33.30261 -31.76396 -31.29057 -28.12747 -27.51780 -27.05954 -26.31830 -25.05700 -24.04760 -22.00258 -21.41337 -20.89239 -20.12132 -19.86542 -19.39703 -18.23485 -17.82915 -17.69260 -17.09927 -16.86016 -16.56744 -16.23198 -15.91614 -15.63540 -15.29709 -15.17509 -14.87705 -14.64742 -14.57013 -14.14665 -13.88196 -13.67781 -13.55079 -13.50577 -13.48472 -13.19560 -13.02763 -12.98441 -12.87982 -12.42023 -12.37998 -12.23899 -12.14537 -12.13092 -11.93363 -11.82032 -11.51649 -11.39874 -10.72640 -10.71126 -10.50829 -10.35539 -10.02292 -9.77049 -9.69961 -8.47742 -5.96028 1.35552 1.41426 1.53716 1.55103 1.84434 2.03604 2.28467 2.81536 2.88196 3.18757 3.23958 3.38518 3.50316 3.71648 3.74524 3.79960 3.95442 4.02611 4.09378 4.13947 4.20803 4.22942 4.28241 4.34366 4.39894 4.44307 4.51481 4.55130 4.59272 4.68831 4.74097 4.75578 4.79168 4.85264 4.94278 4.98637 5.06207 5.14570 5.21124 5.27631 5.31263 5.35084 5.37993 5.40316 5.41328 5.44632 5.84964 6.04417 6.34505 6.59402 7.10825 7.12308 7.54987 8.11151 8.69759 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022117 B = 0.002094 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.707065 B =13368.737237 C =13985.571932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.601 5.601 3 C 0.514 3.486 4 O -0.585 6.585 5 C -0.093 4.093 6 H 0.124 0.876 7 C -0.125 4.125 8 C -0.083 4.083 9 C -0.135 4.135 10 H 0.114 0.886 11 C -0.188 4.188 12 C -0.152 4.152 13 H 0.108 0.892 14 C -0.067 4.067 15 C 0.123 3.877 16 C 0.015 3.985 17 N -0.480 5.480 18 C 0.027 3.973 19 C 0.439 3.561 20 O -0.620 6.620 21 N -0.572 5.572 22 C -0.331 4.331 23 H 0.076 0.924 24 C -0.012 4.012 25 N -0.918 5.918 26 Si 0.991 3.009 27 H -0.276 1.276 28 H -0.272 1.272 29 H -0.269 1.269 30 C 0.003 3.997 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.110 0.890 46 H 0.085 0.915 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.100 0.900 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.113 26.729 5.524 27.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.332 5.332 3 C 0.304 3.696 4 O -0.465 6.465 5 C -0.114 4.114 6 H 0.142 0.858 7 C -0.162 4.162 8 C -0.120 4.120 9 C -0.153 4.153 10 H 0.132 0.868 11 C -0.225 4.225 12 C -0.170 4.170 13 H 0.126 0.874 14 C -0.105 4.105 15 C 0.018 3.982 16 C -0.115 4.115 17 N -0.203 5.203 18 C -0.105 4.105 19 C 0.227 3.773 20 O -0.506 6.506 21 N -0.210 5.210 22 C -0.461 4.461 23 H 0.094 0.906 24 C -0.212 4.212 25 N -0.559 5.559 26 Si 0.815 3.185 27 H -0.200 1.200 28 H -0.197 1.197 29 H -0.194 1.194 30 C -0.127 4.127 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.128 0.872 46 H 0.103 0.897 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.118 0.882 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.599 26.174 4.883 26.633 hybrid contribution -0.699 -0.670 -0.363 1.034 sum -1.298 25.505 4.520 25.935 Atomic orbital electron populations 1.22281 0.77403 1.05053 1.03211 1.47949 1.08156 1.04677 1.72463 1.21377 0.87592 0.86368 0.74262 1.90674 1.16221 1.88015 1.51546 1.21328 0.97841 0.89850 1.02357 0.85826 1.21904 0.97674 1.01242 0.95391 1.20867 0.96847 0.91115 1.03205 1.21954 0.90151 1.00079 1.03134 0.86837 1.22813 1.03921 1.01701 0.94060 1.21780 0.99094 0.98189 0.97953 0.87377 1.20728 0.96225 0.91526 1.02039 1.22833 0.97634 0.81646 0.96050 1.24162 1.00275 0.90514 0.96560 1.68334 1.37128 1.10057 1.04800 1.22343 0.95041 0.95605 0.97478 1.20745 0.82558 0.84590 0.89419 1.90510 1.46723 1.75694 1.37720 1.41923 1.29812 1.27928 1.21314 1.19652 1.15645 1.09758 1.01041 0.90585 1.26002 0.95110 0.99673 1.00405 1.69667 1.19266 1.36374 1.30621 0.84899 0.78274 0.77676 0.77659 1.20048 1.19706 1.19376 1.24505 1.03651 0.88565 0.95939 0.91048 0.90391 0.87557 0.89054 0.92863 0.89164 0.90282 0.89790 0.88177 0.91669 0.93301 0.87916 0.89914 0.91633 0.87167 0.89681 0.76896 0.91271 0.88194 0.88282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 7.42 127.77 0.95 1.72 16 2 N -0.60 -12.21 3.09 -826.82 -2.56 -14.77 16 3 C 0.51 11.77 7.09 87.66 0.62 12.39 16 4 O -0.58 -18.77 15.41 -3.01 -0.05 -18.82 16 5 C -0.09 -1.40 1.69 -11.48 -0.02 -1.42 16 6 H 0.12 1.30 7.34 -2.39 -0.02 1.28 16 7 C -0.12 -1.54 4.60 30.65 0.14 -1.40 16 8 C -0.08 -0.70 5.93 30.25 0.18 -0.52 16 9 C -0.14 -1.33 6.09 -11.64 -0.07 -1.41 16 10 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 11 C -0.19 -2.32 9.59 29.83 0.29 -2.03 16 12 C -0.15 -1.94 6.02 -11.79 -0.07 -2.01 16 13 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 14 C -0.07 -1.16 4.51 30.40 0.14 -1.02 16 15 C 0.12 3.21 4.39 46.56 0.20 3.41 16 16 C 0.01 0.45 6.17 86.41 0.53 0.98 16 17 N -0.48 -15.59 5.95 -912.85 -5.43 -21.02 16 18 C 0.03 0.90 5.31 85.55 0.45 1.35 16 19 C 0.44 20.71 7.59 87.66 0.67 21.38 16 20 O -0.62 -34.62 15.13 -3.09 -0.05 -34.67 16 21 N -0.57 -28.90 5.29 -306.99 -1.62 -30.52 16 22 C -0.33 -18.70 9.68 84.04 0.81 -17.88 16 23 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 24 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 25 N -0.92 -48.70 13.05 21.66 0.28 -48.42 16 26 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 28 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 29 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 30 C 0.00 0.06 7.49 86.41 0.65 0.71 16 31 H 0.07 0.84 6.75 -2.38 -0.02 0.83 16 32 H 0.08 0.94 6.36 -2.39 -0.02 0.92 16 33 H 0.11 0.72 6.15 -2.39 -0.01 0.71 16 34 H 0.09 0.99 4.50 -2.38 -0.01 0.98 16 35 H 0.05 0.85 7.12 -2.39 -0.02 0.83 16 36 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 1.22 7.28 -2.39 -0.02 1.20 16 39 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.05 1.07 7.85 -2.39 -0.02 1.05 16 42 H 0.10 3.21 7.24 -2.39 -0.02 3.20 16 43 H 0.08 2.31 6.35 -2.39 -0.02 2.30 16 44 H 0.07 2.45 8.09 -2.39 -0.02 2.43 16 45 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 46 H 0.09 2.28 7.69 -2.39 -0.02 2.26 16 47 H 0.40 18.82 7.90 -92.70 -0.73 18.09 16 48 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 49 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 50 H 0.10 1.77 6.63 -2.38 -0.02 1.76 16 Total: -1.00 -74.25 385.71 -1.22 -75.47 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.23 Total: 33.94 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 5.94 Total: 14.08 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -9.32 Total: -114.73 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -0.09 Total: -53.48 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -74.25 -1.22 -75.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277618464.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.568 kcal (2) G-P(sol) polarization free energy of solvation -74.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds