Wall clock time and date at job start Tue Mar 31 2020 18:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 119.99956 * 2 1 4 4 O 1.21276 * 120.00033 * 179.97438 * 3 2 1 5 5 C 1.50704 * 120.00090 * 0.02562 * 3 2 1 6 6 H 1.09000 * 109.61112 * 59.64010 * 5 3 2 7 7 C 1.53299 * 109.61515 * 299.10037 * 5 3 2 8 8 C 1.52875 * 108.57963 * 165.82752 * 7 5 3 9 9 C 1.52716 * 110.15434 * 54.51745 * 8 7 5 10 10 H 1.09003 * 115.38763 * 127.17238 * 9 8 7 11 11 C 1.53646 * 116.02829 * 269.79844 * 9 8 7 12 12 C 1.52070 * 120.52331 * 338.53160 * 9 8 7 13 13 H 1.08998 * 115.92764 * 149.26156 * 12 9 8 14 14 C 1.52070 * 120.01780 * 5.28742 * 12 9 8 15 15 C 1.46495 * 119.99852 * 180.02562 * 2 1 3 16 16 C 1.53940 * 113.73692 * 38.76597 * 15 2 1 17 17 N 1.48184 * 86.10122 * 221.95890 * 16 15 2 18 18 C 1.46907 * 111.07071 * 137.51991 * 17 16 15 19 19 C 1.50699 * 109.46746 * 90.56654 * 18 17 16 20 20 O 1.21284 * 120.00468 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99430 * 179.97438 * 19 18 17 22 22 C 1.37100 * 119.99655 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00126 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99905 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00263 * 179.97438 * 24 22 21 26 26 Si 1.86808 * 120.00149 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.46996 * 89.99788 * 26 24 22 28 28 H 1.48494 * 109.46993 * 210.00140 * 26 24 22 29 29 H 1.48505 * 109.46789 * 330.00045 * 26 24 22 30 30 C 1.47960 * 90.80262 * 24.59968 * 17 16 15 31 31 H 1.09002 * 109.47554 * 89.99886 * 1 2 3 32 32 H 1.09000 * 109.47583 * 210.00029 * 1 2 3 33 33 H 1.09002 * 109.47386 * 329.99808 * 1 2 3 34 34 H 1.08997 * 109.62364 * 46.09760 * 7 5 3 35 35 H 1.09005 * 109.61784 * 285.55128 * 7 5 3 36 36 H 1.09005 * 109.35775 * 294.30676 * 8 7 5 37 37 H 1.09003 * 109.35762 * 174.72473 * 8 7 5 38 38 H 1.09004 * 117.53738 * 219.05823 * 11 9 8 39 39 H 1.08999 * 117.53989 * 4.23650 * 11 9 8 40 40 H 1.09000 * 109.27121 * 98.56713 * 14 12 9 41 41 H 1.09004 * 109.26702 * 218.03535 * 14 12 9 42 42 H 1.09004 * 112.93937 * 170.33398 * 15 2 1 43 43 H 1.09003 * 113.75502 * 336.23937 * 16 15 2 44 44 H 1.08992 * 113.75673 * 107.60285 * 16 15 2 45 45 H 1.09005 * 109.46885 * 210.56108 * 18 17 16 46 46 H 1.08994 * 109.47029 * 330.56700 * 18 17 16 47 47 H 0.96994 * 120.00284 * 0.02562 * 21 19 18 48 48 H 0.96997 * 120.00255 * 179.97438 * 25 24 22 49 49 H 1.09003 * 113.75832 * 221.08631 * 30 17 16 50 50 H 1.09000 * 113.76082 * 89.71719 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.7534 2.5295 0.8868 7 6 0.5194 2.5671 -1.2608 8 6 -0.4871 3.7030 -1.0764 9 6 0.2404 4.9985 -0.7236 10 1 -0.0004 5.8558 -1.3523 11 6 0.4553 5.2646 0.7743 12 6 1.6410 4.9615 -0.1324 13 1 2.2834 5.8078 -0.3755 14 6 2.3758 3.6368 0.0005 15 6 2.1975 -1.2687 -0.0006 16 6 1.5557 -2.3543 -0.8834 17 7 1.8637 -3.2922 0.2217 18 6 0.7405 -4.2069 0.4667 19 6 0.9101 -5.4467 -0.3730 20 8 1.8716 -5.5573 -1.1040 21 7 -0.0069 -6.4326 -0.3117 22 6 0.1471 -7.5603 -1.0760 23 1 1.0028 -7.6584 -1.7275 24 6 -0.7985 -8.5765 -1.0133 25 7 -0.6513 -9.6572 -1.7463 26 14 -2.2798 -8.4059 0.1120 27 1 -3.3911 -7.7558 -0.6279 28 1 -2.7104 -9.7509 0.5708 29 1 -1.9151 -7.5751 1.2877 30 6 1.8623 -2.1781 1.1954 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 -0.0125 1.6277 -1.4112 35 1 1.1517 2.7750 -2.1241 36 1 -1.1782 3.4465 -0.2734 37 1 -1.0469 3.8433 -2.0011 38 1 0.3390 6.2899 1.1258 39 1 0.1433 4.4892 1.4738 40 1 3.0653 3.5224 -0.8359 41 1 2.9390 3.6299 0.9337 42 1 3.2669 -1.1418 -0.1691 43 1 0.4886 -2.2092 -1.0517 44 1 2.1084 -2.5578 -1.8005 45 1 0.7196 -4.4823 1.5212 46 1 -0.1944 -3.7134 0.2014 47 1 -0.7760 -6.3440 0.2726 48 1 -1.3111 -10.3668 -1.7022 49 1 2.6595 -2.2412 1.9361 50 1 0.8851 -1.9814 1.6363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277618466.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:16 Heat of formation + Delta-G solvation = 0.892489 kcal Electronic energy + Delta-G solvation = -29203.569022 eV Core-core repulsion = 25232.987084 eV Total energy + Delta-G solvation = -3970.581938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.22120 -40.07293 -38.70841 -37.84085 -35.37968 -33.95296 -33.46719 -31.68416 -31.24163 -30.15650 -27.40538 -26.36821 -26.11815 -25.11596 -23.77886 -23.07366 -21.72241 -20.35240 -19.47661 -19.18459 -18.87666 -18.35313 -17.48825 -16.93375 -16.19352 -15.97457 -15.86351 -15.19904 -15.02684 -14.87288 -14.57572 -14.32871 -14.18511 -14.01982 -13.52696 -13.34090 -13.14113 -12.94624 -12.89665 -12.73308 -12.66378 -12.41532 -12.32768 -12.16798 -11.95544 -11.67757 -11.57769 -11.42310 -11.23288 -11.11780 -10.86911 -10.75290 -10.61004 -10.20300 -10.09831 -9.97643 -9.84084 -9.56601 -8.89567 -8.86800 -8.32792 -8.17587 -6.30714 -3.82142 2.36042 2.63423 3.00843 3.04497 3.13479 3.31404 3.73357 3.85549 4.05479 4.09450 4.19920 4.26048 4.38740 4.46416 4.56649 4.61677 4.62433 4.64973 4.76824 4.81880 4.94816 5.03783 5.05591 5.11484 5.16996 5.19353 5.23915 5.29367 5.30485 5.43645 5.48327 5.49303 5.51701 5.60568 5.64937 5.68038 5.77292 5.78734 5.82033 5.90275 5.91003 5.92033 6.01055 6.25783 6.41159 6.97410 7.12148 7.58243 7.92649 8.14664 8.60792 8.95992 9.42681 9.84520 10.82562 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.002089 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.777571 B =13401.225094 C =13986.787342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.606 5.606 3 C 0.520 3.480 4 O -0.535 6.535 5 C -0.106 4.106 6 H 0.096 0.904 7 C -0.123 4.123 8 C -0.087 4.087 9 C -0.151 4.151 10 H 0.102 0.898 11 C -0.184 4.184 12 C -0.138 4.138 13 H 0.101 0.899 14 C -0.069 4.069 15 C 0.116 3.884 16 C 0.002 3.998 17 N -0.444 5.444 18 C 0.011 3.989 19 C 0.455 3.545 20 O -0.555 6.555 21 N -0.594 5.594 22 C -0.303 4.303 23 H 0.119 0.881 24 C 0.040 3.960 25 N -0.882 5.882 26 Si 0.880 3.120 27 H -0.272 1.272 28 H -0.277 1.277 29 H -0.270 1.270 30 C -0.013 4.013 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.130 0.870 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.058 0.942 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.095 0.905 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 30.525 6.720 31.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.339 5.339 3 C 0.308 3.692 4 O -0.411 6.411 5 C -0.127 4.127 6 H 0.114 0.886 7 C -0.160 4.160 8 C -0.124 4.124 9 C -0.169 4.169 10 H 0.120 0.880 11 C -0.220 4.220 12 C -0.156 4.156 13 H 0.119 0.881 14 C -0.107 4.107 15 C 0.013 3.987 16 C -0.128 4.128 17 N -0.167 5.167 18 C -0.122 4.122 19 C 0.240 3.760 20 O -0.435 6.435 21 N -0.234 5.234 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.163 4.163 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.196 1.196 30 C -0.143 4.143 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.148 0.852 43 H 0.091 0.909 44 H 0.118 0.882 45 H 0.108 0.892 46 H 0.076 0.924 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.113 0.887 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.439 29.773 6.103 30.489 hybrid contribution -2.286 0.289 1.056 2.535 sum -4.725 30.062 7.159 31.262 Atomic orbital electron populations 1.21967 0.79806 1.03263 1.02133 1.47905 1.06789 1.05852 1.73371 1.20689 0.87950 0.85179 0.75356 1.90704 1.13978 1.87304 1.49141 1.21365 0.98171 0.92529 1.00629 0.88568 1.21836 0.97790 0.99739 0.96669 1.21031 0.96914 0.92466 1.01985 1.22260 0.98958 0.99574 0.96098 0.88033 1.23144 1.03414 1.02388 0.93098 1.21854 0.90676 0.99151 1.03966 0.88080 1.20654 0.96445 0.89978 1.03622 1.23166 0.98995 0.80611 0.95970 1.24479 1.00135 0.90358 0.97787 1.68375 1.37228 1.08190 1.02865 1.22497 0.93123 0.95456 1.01107 1.19561 0.85050 0.84710 0.86698 1.90573 1.31041 1.80030 1.41872 1.42219 1.22602 1.17818 1.40789 1.19426 1.10563 0.92690 1.20531 0.86304 1.25039 0.98127 0.95480 0.97612 1.69621 1.35993 1.07144 1.39479 0.86670 0.83316 0.78571 0.80801 1.19708 1.20178 1.19560 1.24496 1.01848 0.91067 0.96880 0.91712 0.90983 0.90588 0.90137 0.90875 0.91443 0.91040 0.89011 0.88776 0.90384 0.90854 0.85201 0.90945 0.88246 0.89189 0.92447 0.79840 0.91643 0.88654 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 7.43 59.85 0.44 0.90 16 2 N -0.61 -5.89 3.09 -175.27 -0.54 -6.43 16 3 C 0.52 5.63 7.08 -10.98 -0.08 5.55 16 4 O -0.54 -7.89 15.39 5.56 0.09 -7.80 16 5 C -0.11 -0.80 1.45 -91.68 -0.13 -0.93 16 6 H 0.10 0.60 6.37 -51.93 -0.33 0.27 16 7 C -0.12 -0.77 4.84 -26.64 -0.13 -0.90 16 8 C -0.09 -0.44 5.84 -26.94 -0.16 -0.60 16 9 C -0.15 -0.86 6.19 -90.90 -0.56 -1.42 16 10 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 11 C -0.18 -1.02 9.66 -26.75 -0.26 -1.28 16 12 C -0.14 -0.89 6.00 -91.92 -0.55 -1.45 16 13 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 14 C -0.07 -0.56 4.58 -27.27 -0.13 -0.68 16 15 C 0.12 1.40 4.39 -69.63 -0.31 1.10 16 16 C 0.00 0.03 7.41 -2.63 -0.02 0.01 16 17 N -0.44 -7.00 5.65 -239.67 -1.35 -8.35 16 18 C 0.01 0.17 5.28 -4.97 -0.03 0.14 16 19 C 0.45 10.38 7.83 -10.99 -0.09 10.29 16 20 O -0.55 -15.21 16.01 5.55 0.09 -15.12 16 21 N -0.59 -14.12 5.09 -10.97 -0.06 -14.18 16 22 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 23 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 24 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 25 N -0.88 -25.82 13.96 55.50 0.77 -25.05 16 26 Si 0.88 19.22 27.74 -169.99 -4.72 14.50 16 27 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 28 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 29 H -0.27 -5.35 6.52 56.52 0.37 -4.99 16 30 C -0.01 -0.15 7.47 -2.76 -0.02 -0.17 16 31 H 0.06 0.37 6.77 -51.93 -0.35 0.02 16 32 H 0.07 0.45 6.35 -51.93 -0.33 0.12 16 33 H 0.08 0.34 6.15 -51.93 -0.32 0.03 16 34 H 0.08 0.46 4.61 -51.93 -0.24 0.22 16 35 H 0.07 0.54 8.04 -51.93 -0.42 0.12 16 36 H 0.07 0.30 8.06 -51.93 -0.42 -0.12 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.51 7.27 -51.93 -0.38 0.13 16 40 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.13 1.82 7.22 -51.93 -0.37 1.45 16 43 H 0.07 0.86 6.17 -51.93 -0.32 0.54 16 44 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 45 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 46 H 0.06 0.77 7.39 -51.93 -0.38 0.39 16 47 H 0.37 7.62 5.76 -40.82 -0.24 7.39 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.07 0.68 6.62 -51.93 -0.34 0.34 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -35.05 384.26 -9.97 -45.02 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.79 Total: 8.81 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -2.26 Total: 2.81 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -1.18 Total: -54.01 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.17 Total: -22.92 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.72 Total: 14.50 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.05 -9.97 -45.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277618466.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.910 kcal (2) G-P(sol) polarization free energy of solvation -35.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds