Wall clock time and date at job start Tue Mar 31 2020 18:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 119.99956 * 2 1 4 4 O 1.21276 * 120.00033 * 179.97438 * 3 2 1 5 5 C 1.50704 * 120.00090 * 0.02562 * 3 2 1 6 6 H 1.09000 * 109.61112 * 59.64010 * 5 3 2 7 7 C 1.53299 * 109.61515 * 299.10037 * 5 3 2 8 8 C 1.52875 * 108.57963 * 165.82752 * 7 5 3 9 9 C 1.52716 * 110.15434 * 54.51745 * 8 7 5 10 10 H 1.09003 * 115.38763 * 127.17238 * 9 8 7 11 11 C 1.53646 * 116.02829 * 269.79844 * 9 8 7 12 12 C 1.52070 * 120.52331 * 338.53160 * 9 8 7 13 13 H 1.08998 * 115.92764 * 149.26156 * 12 9 8 14 14 C 1.52070 * 120.01780 * 5.28742 * 12 9 8 15 15 C 1.46495 * 119.99852 * 180.02562 * 2 1 3 16 16 C 1.53940 * 113.73692 * 38.76597 * 15 2 1 17 17 N 1.48184 * 86.10122 * 221.95890 * 16 15 2 18 18 C 1.46907 * 111.07071 * 137.51991 * 17 16 15 19 19 C 1.50699 * 109.46746 * 90.56654 * 18 17 16 20 20 O 1.21284 * 120.00468 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99430 * 179.97438 * 19 18 17 22 22 C 1.37100 * 119.99655 * 179.97438 * 21 19 18 23 23 H 1.07997 * 120.00126 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99905 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00263 * 179.97438 * 24 22 21 26 26 Si 1.86808 * 120.00149 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.46996 * 89.99788 * 26 24 22 28 28 H 1.48494 * 109.46993 * 210.00140 * 26 24 22 29 29 H 1.48505 * 109.46789 * 330.00045 * 26 24 22 30 30 C 1.47960 * 90.80262 * 24.59968 * 17 16 15 31 31 H 1.09002 * 109.47554 * 89.99886 * 1 2 3 32 32 H 1.09000 * 109.47583 * 210.00029 * 1 2 3 33 33 H 1.09002 * 109.47386 * 329.99808 * 1 2 3 34 34 H 1.08997 * 109.62364 * 46.09760 * 7 5 3 35 35 H 1.09005 * 109.61784 * 285.55128 * 7 5 3 36 36 H 1.09005 * 109.35775 * 294.30676 * 8 7 5 37 37 H 1.09003 * 109.35762 * 174.72473 * 8 7 5 38 38 H 1.09004 * 117.53738 * 219.05823 * 11 9 8 39 39 H 1.08999 * 117.53989 * 4.23650 * 11 9 8 40 40 H 1.09000 * 109.27121 * 98.56713 * 14 12 9 41 41 H 1.09004 * 109.26702 * 218.03535 * 14 12 9 42 42 H 1.09004 * 112.93937 * 170.33398 * 15 2 1 43 43 H 1.09003 * 113.75502 * 336.23937 * 16 15 2 44 44 H 1.08992 * 113.75673 * 107.60285 * 16 15 2 45 45 H 1.09005 * 109.46885 * 210.56108 * 18 17 16 46 46 H 1.08994 * 109.47029 * 330.56700 * 18 17 16 47 47 H 0.96994 * 120.00284 * 0.02562 * 21 19 18 48 48 H 0.96997 * 120.00255 * 179.97438 * 25 24 22 49 49 H 1.09003 * 113.75832 * 221.08631 * 30 17 16 50 50 H 1.09000 * 113.76082 * 89.71719 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.7534 2.5295 0.8868 7 6 0.5194 2.5671 -1.2608 8 6 -0.4871 3.7030 -1.0764 9 6 0.2404 4.9985 -0.7236 10 1 -0.0004 5.8558 -1.3523 11 6 0.4553 5.2646 0.7743 12 6 1.6410 4.9615 -0.1324 13 1 2.2834 5.8078 -0.3755 14 6 2.3758 3.6368 0.0005 15 6 2.1975 -1.2687 -0.0006 16 6 1.5557 -2.3543 -0.8834 17 7 1.8637 -3.2922 0.2217 18 6 0.7405 -4.2069 0.4667 19 6 0.9101 -5.4467 -0.3730 20 8 1.8716 -5.5573 -1.1040 21 7 -0.0069 -6.4326 -0.3117 22 6 0.1471 -7.5603 -1.0760 23 1 1.0028 -7.6584 -1.7275 24 6 -0.7985 -8.5765 -1.0133 25 7 -0.6513 -9.6572 -1.7463 26 14 -2.2798 -8.4059 0.1120 27 1 -3.3911 -7.7558 -0.6279 28 1 -2.7104 -9.7509 0.5708 29 1 -1.9151 -7.5751 1.2877 30 6 1.8623 -2.1781 1.1954 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 -0.0125 1.6277 -1.4112 35 1 1.1517 2.7750 -2.1241 36 1 -1.1782 3.4465 -0.2734 37 1 -1.0469 3.8433 -2.0011 38 1 0.3390 6.2899 1.1258 39 1 0.1433 4.4892 1.4738 40 1 3.0653 3.5224 -0.8359 41 1 2.9390 3.6299 0.9337 42 1 3.2669 -1.1418 -0.1691 43 1 0.4886 -2.2092 -1.0517 44 1 2.1084 -2.5578 -1.8005 45 1 0.7196 -4.4823 1.5212 46 1 -0.1944 -3.7134 0.2014 47 1 -0.7760 -6.3440 0.2726 48 1 -1.3111 -10.3668 -1.7022 49 1 2.6595 -2.2412 1.9361 50 1 0.8851 -1.9814 1.6363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277618466.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:15 Heat of formation + Delta-G solvation = -25.740435 kcal Electronic energy + Delta-G solvation = -29204.723912 eV Core-core repulsion = 25232.987084 eV Total energy + Delta-G solvation = -3971.736829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.05414 -40.98805 -39.89153 -39.17408 -36.27790 -35.91741 -34.10010 -33.74192 -31.75890 -31.37367 -28.12809 -27.55143 -27.11209 -26.31947 -24.78732 -23.89672 -22.24259 -21.36318 -21.07504 -20.36748 -19.95639 -19.43961 -18.27454 -17.80502 -17.76320 -16.93304 -16.78539 -16.64763 -16.17927 -15.80611 -15.52614 -15.37198 -15.12726 -14.83822 -14.65755 -14.56909 -14.41162 -14.03375 -14.00865 -13.66170 -13.61303 -13.41463 -13.24248 -13.06220 -12.82579 -12.77778 -12.46845 -12.40879 -12.18939 -12.08689 -11.98494 -11.92079 -11.85514 -11.49494 -11.39144 -10.75539 -10.62789 -10.49943 -10.45997 -10.23984 -9.71853 -9.68540 -8.40240 -6.01657 1.30627 1.36830 1.46093 1.54200 1.84553 1.97712 2.24381 2.64971 2.87394 3.15170 3.16743 3.41538 3.49900 3.64888 3.71651 3.78946 3.97955 4.06457 4.08288 4.10927 4.13939 4.17634 4.27270 4.31879 4.36464 4.43668 4.47955 4.59264 4.59510 4.67065 4.69499 4.77042 4.82338 4.88182 4.97327 5.00292 5.02871 5.17405 5.22570 5.29623 5.31393 5.32984 5.36984 5.43536 5.47253 5.54743 5.88838 5.99989 6.34981 6.60897 6.89767 7.11909 7.41043 7.99943 8.77696 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.002089 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.777571 B =13401.225094 C =13986.787342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.600 5.600 3 C 0.513 3.487 4 O -0.586 6.586 5 C -0.095 4.095 6 H 0.120 0.880 7 C -0.119 4.119 8 C -0.083 4.083 9 C -0.150 4.150 10 H 0.107 0.893 11 C -0.175 4.175 12 C -0.152 4.152 13 H 0.099 0.901 14 C -0.067 4.067 15 C 0.124 3.876 16 C 0.004 3.996 17 N -0.487 5.487 18 C 0.024 3.976 19 C 0.450 3.550 20 O -0.612 6.612 21 N -0.592 5.592 22 C -0.329 4.329 23 H 0.051 0.949 24 C -0.019 4.019 25 N -0.937 5.937 26 Si 0.969 3.031 27 H -0.254 1.254 28 H -0.277 1.277 29 H -0.229 1.229 30 C 0.004 3.996 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.120 0.880 46 H 0.100 0.900 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.094 0.906 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.761 32.940 9.744 35.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.332 5.332 3 C 0.303 3.697 4 O -0.466 6.466 5 C -0.116 4.116 6 H 0.138 0.862 7 C -0.156 4.156 8 C -0.120 4.120 9 C -0.168 4.168 10 H 0.125 0.875 11 C -0.212 4.212 12 C -0.171 4.171 13 H 0.117 0.883 14 C -0.105 4.105 15 C 0.019 3.981 16 C -0.126 4.126 17 N -0.211 5.211 18 C -0.107 4.107 19 C 0.238 3.762 20 O -0.496 6.496 21 N -0.234 5.234 22 C -0.458 4.458 23 H 0.069 0.931 24 C -0.217 4.217 25 N -0.577 5.577 26 Si 0.788 3.212 27 H -0.178 1.178 28 H -0.202 1.202 29 H -0.152 1.152 30 C -0.125 4.125 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.084 0.916 45 H 0.138 0.862 46 H 0.118 0.882 47 H 0.226 0.774 48 H 0.088 0.912 49 H 0.112 0.888 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.003 32.221 9.142 34.217 hybrid contribution -0.711 -0.464 -0.004 0.849 sum -7.714 31.757 9.138 33.934 Atomic orbital electron populations 1.22325 0.77123 1.05259 1.03495 1.47935 1.08294 1.04494 1.72466 1.21350 0.87565 0.86437 0.74313 1.90686 1.16363 1.88022 1.51500 1.21352 0.97887 0.90024 1.02313 0.86189 1.21827 0.97642 1.01013 0.95155 1.21056 0.96565 0.91289 1.03137 1.22371 0.97761 1.00256 0.96396 0.87527 1.23218 1.01786 1.03074 0.93099 1.21785 0.91288 0.98091 1.05903 0.88260 1.20559 0.96494 0.91476 1.01927 1.22748 0.97634 0.81681 0.96067 1.24463 1.01265 0.90481 0.96371 1.68280 1.37971 1.09947 1.04863 1.22443 0.95119 0.92245 1.00930 1.20965 0.83348 0.86041 0.85840 1.90554 1.33326 1.81435 1.44307 1.42024 1.23833 1.16760 1.40806 1.18979 1.09560 0.95605 1.21650 0.93127 1.26188 1.02069 0.94076 0.99370 1.69817 1.37867 1.08450 1.41613 0.85319 0.77426 0.79351 0.79098 1.17824 1.20235 1.15205 1.24492 1.03689 0.88403 0.95874 0.90676 0.89699 0.87945 0.88957 0.92654 0.89665 0.90171 0.88302 0.88049 0.92823 0.92158 0.88376 0.88310 0.91594 0.86180 0.88182 0.77394 0.91178 0.88780 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 7.43 127.77 0.95 1.44 16 2 N -0.60 -10.40 3.09 -826.82 -2.56 -12.95 16 3 C 0.51 10.76 7.08 87.66 0.62 11.38 16 4 O -0.59 -18.07 15.39 -3.02 -0.05 -18.12 16 5 C -0.09 -1.26 1.45 -11.48 -0.02 -1.28 16 6 H 0.12 1.05 6.37 -2.39 -0.02 1.04 16 7 C -0.12 -1.21 4.84 30.65 0.15 -1.06 16 8 C -0.08 -0.56 5.84 30.46 0.18 -0.38 16 9 C -0.15 -1.32 6.19 -10.98 -0.07 -1.39 16 10 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 11 C -0.17 -1.47 9.66 30.58 0.30 -1.18 16 12 C -0.15 -1.81 6.00 -11.64 -0.07 -1.88 16 13 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 14 C -0.07 -1.07 4.58 30.24 0.14 -0.94 16 15 C 0.12 2.88 4.39 46.56 0.20 3.08 16 16 C 0.00 0.10 7.41 86.37 0.64 0.74 16 17 N -0.49 -14.58 5.65 -912.19 -5.15 -19.73 16 18 C 0.02 0.70 5.28 85.56 0.45 1.15 16 19 C 0.45 20.38 7.83 87.66 0.69 21.06 16 20 O -0.61 -35.11 16.01 -3.04 -0.05 -35.16 16 21 N -0.59 -27.61 5.09 -306.99 -1.56 -29.18 16 22 C -0.33 -19.35 10.16 84.04 0.85 -18.49 16 23 H 0.05 3.59 7.39 -2.91 -0.02 3.57 16 24 C -0.02 -1.04 5.50 84.93 0.47 -0.58 16 25 N -0.94 -56.70 13.96 21.66 0.30 -56.40 16 26 Si 0.97 37.95 27.74 68.60 1.90 39.85 16 27 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 28 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 29 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 30 C 0.00 0.09 7.47 86.41 0.65 0.74 16 31 H 0.07 0.52 6.77 -2.39 -0.02 0.50 16 32 H 0.08 0.54 6.35 -2.39 -0.02 0.53 16 33 H 0.10 0.35 6.15 -2.39 -0.01 0.34 16 34 H 0.09 0.73 4.61 -2.39 -0.01 0.72 16 35 H 0.05 0.77 8.04 -2.38 -0.02 0.76 16 36 H 0.08 0.32 8.06 -2.38 -0.02 0.30 16 37 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.10 0.71 7.27 -2.39 -0.02 0.70 16 40 H 0.05 1.10 7.93 -2.39 -0.02 1.08 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.10 2.93 7.22 -2.38 -0.02 2.91 16 43 H 0.10 2.03 6.17 -2.39 -0.01 2.01 16 44 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.12 2.81 8.08 -2.38 -0.02 2.79 16 46 H 0.10 2.09 7.39 -2.39 -0.02 2.07 16 47 H 0.39 14.67 5.76 -92.71 -0.53 14.14 16 48 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 49 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.11 1.44 6.62 -2.39 -0.02 1.43 16 Total: -1.00 -86.34 384.26 -0.67 -87.01 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.37 Total: 32.27 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 6.13 Total: 12.42 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -8.97 Total: -118.27 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.10 Total: -53.28 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 1.90 Total: 39.85 kcal Total: -86.34 -0.67 -87.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277618466.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.270 kcal (2) G-P(sol) polarization free energy of solvation -86.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds