Wall clock time and date at job start Tue Mar 31 2020 18:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99983 * 2 1 4 4 C 1.50700 * 109.47257 * 89.99572 * 3 2 1 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99675 * 180.27849 * 4 3 2 7 7 C 1.44782 * 120.18285 * 359.72209 * 6 4 3 8 8 C 1.51515 * 112.22593 * 264.55924 * 7 6 4 9 9 C 1.51322 * 113.24894 * 285.36174 * 8 7 6 10 10 H 1.08998 * 111.31232 * 186.10545 * 9 8 7 11 11 C 1.54716 * 106.48544 * 307.66872 * 9 8 7 12 12 C 1.54232 * 104.37506 * 89.11334 * 11 9 8 13 13 C 1.50873 * 105.27539 * 11.56195 * 12 11 9 14 14 H 1.09002 * 106.52346 * 122.52563 * 13 12 11 15 15 C 1.49821 * 120.17617 * 179.45259 * 6 4 3 16 16 N 1.48663 * 109.01112 * 62.92348 * 9 8 7 17 17 C 1.36935 * 127.83812 * 97.34499 * 16 9 8 18 18 H 1.07995 * 120.00533 * 359.97438 * 17 16 9 19 19 C 1.38813 * 119.99728 * 179.97438 * 17 16 9 20 20 N 1.31623 * 119.99936 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00031 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46795 * 59.99839 * 21 19 17 23 23 H 1.48495 * 109.46811 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47164 * 299.99846 * 21 19 17 25 25 C 1.34771 * 119.99877 * 179.97438 * 2 1 3 26 26 O 1.21279 * 120.00037 * 179.97438 * 25 2 1 27 27 C 1.50703 * 120.00343 * 0.02562 * 25 2 1 28 28 C 1.52998 * 117.49760 * 248.74547 * 27 25 2 29 29 C 1.53003 * 117.49849 * 180.08664 * 27 25 2 30 30 H 1.08998 * 109.46961 * 90.00627 * 1 2 3 31 31 H 1.08997 * 109.47067 * 210.00075 * 1 2 3 32 32 H 1.08998 * 109.47093 * 330.00363 * 1 2 3 33 33 H 1.09009 * 109.46700 * 329.99466 * 3 2 1 34 34 H 1.08998 * 109.46827 * 210.00040 * 3 2 1 35 35 H 1.08997 * 108.93262 * 25.26125 * 7 6 4 36 36 H 1.08995 * 108.93469 * 143.84813 * 7 6 4 37 37 H 1.08993 * 108.73137 * 46.33892 * 8 7 6 38 38 H 1.09005 * 108.72489 * 164.51964 * 8 7 6 39 39 H 1.09002 * 110.45323 * 207.84233 * 11 9 8 40 40 H 1.09002 * 110.45190 * 330.39705 * 11 9 8 41 41 H 1.09003 * 110.28258 * 130.51234 * 12 11 9 42 42 H 1.09000 * 110.29134 * 252.51504 * 12 11 9 43 43 H 1.08999 * 109.54470 * 270.55117 * 15 6 4 44 44 H 1.08995 * 109.54747 * 30.82861 * 15 6 4 45 45 H 0.97001 * 119.99940 * 180.02562 * 20 19 17 46 46 H 1.09002 * 115.54934 * 34.41283 * 27 25 2 47 47 H 1.09002 * 117.49784 * 359.97438 * 28 27 25 48 48 H 1.09002 * 117.50137 * 145.02113 * 28 27 25 49 49 H 1.09000 * 117.49626 * 214.97655 * 29 27 25 50 50 H 1.08996 * 117.50026 * 359.96940 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 8 2.0541 1.0216 2.3426 6 7 3.1062 2.8542 1.6670 7 6 3.5784 3.6720 0.5695 8 6 5.0269 3.3897 0.2262 9 6 6.0020 3.9682 1.2285 10 1 7.0326 3.8406 0.8976 11 6 5.6395 5.4646 1.3802 12 6 4.5931 5.4923 2.5128 13 6 4.6336 4.1140 3.1252 14 1 4.8621 4.2510 4.1821 15 6 3.3473 3.2968 3.0779 16 7 5.7753 3.3269 2.5504 17 6 6.4584 2.2764 3.1026 18 1 7.2706 1.8155 2.5602 19 6 6.1070 1.8040 4.3597 20 7 5.1175 2.3662 5.0210 21 14 7.0385 0.3706 5.1128 22 1 8.4723 0.7308 5.2528 23 1 6.4734 0.0613 6.4507 24 1 6.9106 -0.8194 4.2338 25 6 2.1389 -1.1672 0.0005 26 8 3.3517 -1.1672 0.0001 27 6 1.3854 -2.4723 0.0005 28 6 1.4578 -3.3298 1.2656 29 6 2.2076 -3.7627 0.0032 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6084 2.0284 -0.5140 34 1 3.1499 1.1383 -0.5138 35 1 2.9625 3.4759 -0.3082 36 1 3.4779 4.7224 0.8423 37 1 5.1717 2.3104 0.1800 38 1 5.2432 3.8135 -0.7545 39 1 6.5197 6.0432 1.6605 40 1 5.2094 5.8480 0.4549 41 1 4.8602 6.2438 3.2558 42 1 3.6025 5.6981 2.1073 43 1 2.5104 3.9075 3.4165 44 1 3.4473 2.4233 3.7221 45 1 4.8722 2.0363 5.8996 46 1 0.4480 -2.4740 -0.5556 47 1 2.0508 -2.9501 2.0977 48 1 0.5682 -3.8959 1.5415 49 1 1.8108 -4.6134 -0.5509 50 1 3.2934 -3.6676 0.0044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278310346.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:55 Heat of formation + Delta-G solvation = 16.687047 kcal Electronic energy + Delta-G solvation = -31737.927253 eV Core-core repulsion = 27768.030218 eV Total energy + Delta-G solvation = -3969.897035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.27266 -39.52094 -37.88979 -36.10585 -35.16049 -34.17846 -32.87146 -31.59310 -29.38416 -29.14090 -27.01170 -26.48408 -25.77297 -24.00905 -23.29126 -22.42991 -21.96671 -19.82475 -19.23318 -18.90029 -18.12369 -17.44623 -17.04072 -16.52099 -16.02040 -15.34737 -15.04025 -14.90590 -14.57227 -14.38532 -14.21985 -13.88124 -13.64150 -13.12698 -12.89093 -12.86772 -12.58345 -12.47195 -12.28994 -12.09505 -11.92412 -11.55495 -11.53933 -11.39577 -11.20461 -11.17303 -10.82731 -10.72639 -10.69871 -10.60156 -10.49907 -10.16450 -9.90240 -9.69202 -9.64610 -9.55266 -9.38440 -9.23036 -8.66592 -8.30810 -7.69694 -6.81347 -5.64381 -2.99924 2.62342 2.96345 3.33848 3.47632 3.53064 3.55226 3.87223 3.93202 4.52482 4.54597 4.77786 4.88257 5.01439 5.08057 5.11950 5.18048 5.27711 5.32872 5.41939 5.48864 5.56087 5.58688 5.59673 5.63352 5.67029 5.72577 5.75724 5.89198 5.93484 5.98721 6.14487 6.15124 6.23910 6.27510 6.46062 6.49052 6.49700 6.62699 6.71918 6.84436 7.01451 7.09565 7.28106 7.44812 7.55626 7.68210 7.91160 8.27968 8.29215 8.37901 8.96663 9.20749 9.83268 10.56285 11.44588 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.004970 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.626325 B = 5631.953917 C = 7096.822327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.598 5.598 3 C 0.098 3.902 4 C 0.494 3.506 5 O -0.540 6.540 6 N -0.590 5.590 7 C 0.108 3.892 8 C -0.153 4.153 9 C 0.151 3.849 10 H 0.060 0.940 11 C -0.130 4.130 12 C -0.123 4.123 13 C 0.141 3.859 14 H 0.097 0.903 15 C 0.128 3.872 16 N -0.579 5.579 17 C -0.206 4.206 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.546 3.454 26 O -0.529 6.529 27 C -0.191 4.191 28 C -0.150 4.150 29 C -0.150 4.150 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.030 0.970 44 H 0.125 0.875 45 H 0.253 0.747 46 H 0.122 0.878 47 H 0.103 0.897 48 H 0.103 0.897 49 H 0.101 0.899 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.874 0.080 -12.864 16.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.330 5.330 3 C -0.028 4.028 4 C 0.279 3.721 5 O -0.417 6.417 6 N -0.323 5.323 7 C -0.016 4.016 8 C -0.194 4.194 9 C 0.042 3.958 10 H 0.078 0.922 11 C -0.169 4.169 12 C -0.161 4.161 13 C 0.034 3.966 14 H 0.115 0.885 15 C 0.007 3.993 16 N -0.302 5.302 17 C -0.334 4.334 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.213 1.213 25 C 0.334 3.666 26 O -0.404 6.404 27 C -0.212 4.212 28 C -0.187 4.187 29 C -0.188 4.188 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.143 0.857 45 H 0.063 0.937 46 H 0.140 0.860 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.383 -0.450 -12.108 15.957 hybrid contribution 0.275 -0.601 0.275 0.716 sum -10.108 -1.050 -11.833 15.598 Atomic orbital electron populations 1.21744 0.79222 1.03766 1.00984 1.47259 1.06895 1.04994 1.73884 1.21400 0.99435 0.85824 0.96188 1.20798 0.79080 0.81126 0.91060 1.90650 1.51964 1.53131 1.45966 1.48468 1.54104 1.21218 1.08521 1.21004 0.94851 0.96780 0.88981 1.22075 0.96205 1.02373 0.98752 1.21093 0.95922 0.90712 0.88026 0.92199 1.22676 0.98608 0.97918 0.97686 1.21929 0.98007 0.98375 0.97791 1.20898 0.87371 0.87125 1.01173 0.88498 1.23213 0.94861 1.01699 0.79528 1.45358 1.35610 1.35820 1.13363 1.18893 1.10433 1.05450 0.98610 0.90442 1.24642 0.98720 0.99599 0.97324 1.69673 1.30096 1.43240 1.13903 0.86184 0.78760 0.82420 0.78402 1.21366 1.21621 1.21262 1.19648 0.87344 0.84272 0.75306 1.90737 1.13831 1.86999 1.48879 1.22145 1.02346 0.90755 1.05949 1.22956 1.03065 1.01019 0.91702 1.22963 1.00221 0.95048 1.00546 0.92753 0.90769 0.91080 0.88399 0.87392 0.92680 0.90074 0.92128 0.92782 0.92425 0.92135 0.92250 0.92304 0.95182 0.85699 0.93670 0.86036 0.87895 0.87896 0.88092 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 10.01 59.85 0.60 1.52 16 2 N -0.60 -9.18 2.36 -182.95 -0.43 -9.61 16 3 C 0.10 1.58 4.37 -5.19 -0.02 1.56 16 4 C 0.49 10.35 7.76 -10.98 -0.09 10.27 16 5 O -0.54 -13.56 16.09 5.55 0.09 -13.47 16 6 N -0.59 -11.97 2.86 -173.50 -0.50 -12.47 16 7 C 0.11 1.75 4.98 -5.71 -0.03 1.72 16 8 C -0.15 -2.66 5.01 -28.33 -0.14 -2.80 16 9 C 0.15 2.96 4.02 -66.68 -0.27 2.69 16 10 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 11 C -0.13 -2.11 6.02 -25.18 -0.15 -2.26 16 12 C -0.12 -2.15 5.78 -27.15 -0.16 -2.31 16 13 C 0.14 3.17 2.00 -67.25 -0.13 3.04 16 14 H 0.10 2.55 6.21 -51.93 -0.32 2.23 16 15 C 0.13 2.97 5.76 -2.46 -0.01 2.95 16 16 N -0.58 -14.23 2.77 -155.16 -0.43 -14.66 16 17 C -0.21 -5.79 10.43 -15.06 -0.16 -5.94 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -26.72 8.33 55.49 0.46 -26.26 16 21 Si 0.91 23.45 29.55 -169.99 -5.02 18.43 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 24 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 25 C 0.55 9.45 7.46 -10.99 -0.08 9.37 16 26 O -0.53 -11.59 15.84 5.56 0.09 -11.50 16 27 C -0.19 -2.44 4.79 -91.77 -0.44 -2.88 16 28 C -0.15 -1.87 10.24 -26.69 -0.27 -2.14 16 29 C -0.15 -1.80 10.05 -26.69 -0.27 -2.07 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.73 6.64 -51.93 -0.34 0.39 16 32 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 33 H 0.10 1.17 7.33 -51.92 -0.38 0.79 16 34 H 0.11 1.86 7.39 -51.93 -0.38 1.48 16 35 H 0.05 0.71 6.20 -51.93 -0.32 0.39 16 36 H 0.08 1.22 3.93 -51.93 -0.20 1.02 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.80 7.38 -51.93 -0.38 0.42 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.91 6.15 -51.93 -0.32 0.59 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.13 3.55 5.39 -51.93 -0.28 3.27 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.12 1.15 7.27 -51.93 -0.38 0.77 16 47 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 48 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.11 1.54 7.67 -51.93 -0.40 1.14 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -35.89 380.47 -9.64 -45.52 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.91 Total: 5.91 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: -1.72 Total: 12.38 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.90 Total: -63.00 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: 0.18 Total: -24.97 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.43 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.89 -9.64 -45.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278310346.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.210 kcal (2) G-P(sol) polarization free energy of solvation -35.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds