Wall clock time and date at job start Tue Mar 31 2020 18:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99983 * 2 1 4 4 C 1.50700 * 109.47257 * 89.99572 * 3 2 1 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99675 * 180.27849 * 4 3 2 7 7 C 1.44782 * 120.18285 * 359.72209 * 6 4 3 8 8 C 1.51515 * 112.22593 * 264.55924 * 7 6 4 9 9 C 1.51322 * 113.24894 * 285.36174 * 8 7 6 10 10 H 1.08998 * 111.31232 * 186.10545 * 9 8 7 11 11 C 1.54716 * 106.48544 * 307.66872 * 9 8 7 12 12 C 1.54232 * 104.37506 * 89.11334 * 11 9 8 13 13 C 1.50873 * 105.27539 * 11.56195 * 12 11 9 14 14 H 1.09002 * 106.52346 * 122.52563 * 13 12 11 15 15 C 1.49821 * 120.17617 * 179.45259 * 6 4 3 16 16 N 1.48663 * 109.01112 * 62.92348 * 9 8 7 17 17 C 1.36935 * 127.83812 * 97.34499 * 16 9 8 18 18 H 1.07995 * 120.00533 * 359.97438 * 17 16 9 19 19 C 1.38813 * 119.99728 * 179.97438 * 17 16 9 20 20 N 1.31623 * 119.99936 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00031 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46795 * 59.99839 * 21 19 17 23 23 H 1.48495 * 109.46811 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47164 * 299.99846 * 21 19 17 25 25 C 1.34771 * 119.99877 * 179.97438 * 2 1 3 26 26 O 1.21279 * 120.00037 * 179.97438 * 25 2 1 27 27 C 1.50703 * 120.00343 * 0.02562 * 25 2 1 28 28 C 1.52998 * 117.49760 * 248.74547 * 27 25 2 29 29 C 1.53003 * 117.49849 * 180.08664 * 27 25 2 30 30 H 1.08998 * 109.46961 * 90.00627 * 1 2 3 31 31 H 1.08997 * 109.47067 * 210.00075 * 1 2 3 32 32 H 1.08998 * 109.47093 * 330.00363 * 1 2 3 33 33 H 1.09009 * 109.46700 * 329.99466 * 3 2 1 34 34 H 1.08998 * 109.46827 * 210.00040 * 3 2 1 35 35 H 1.08997 * 108.93262 * 25.26125 * 7 6 4 36 36 H 1.08995 * 108.93469 * 143.84813 * 7 6 4 37 37 H 1.08993 * 108.73137 * 46.33892 * 8 7 6 38 38 H 1.09005 * 108.72489 * 164.51964 * 8 7 6 39 39 H 1.09002 * 110.45323 * 207.84233 * 11 9 8 40 40 H 1.09002 * 110.45190 * 330.39705 * 11 9 8 41 41 H 1.09003 * 110.28258 * 130.51234 * 12 11 9 42 42 H 1.09000 * 110.29134 * 252.51504 * 12 11 9 43 43 H 1.08999 * 109.54470 * 270.55117 * 15 6 4 44 44 H 1.08995 * 109.54747 * 30.82861 * 15 6 4 45 45 H 0.97001 * 119.99940 * 180.02562 * 20 19 17 46 46 H 1.09002 * 115.54934 * 34.41283 * 27 25 2 47 47 H 1.09002 * 117.49784 * 359.97438 * 28 27 25 48 48 H 1.09002 * 117.50137 * 145.02113 * 28 27 25 49 49 H 1.09000 * 117.49626 * 214.97655 * 29 27 25 50 50 H 1.08996 * 117.50026 * 359.96940 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 8 2.0541 1.0216 2.3426 6 7 3.1062 2.8542 1.6670 7 6 3.5784 3.6720 0.5695 8 6 5.0269 3.3897 0.2262 9 6 6.0020 3.9682 1.2285 10 1 7.0326 3.8406 0.8976 11 6 5.6395 5.4646 1.3802 12 6 4.5931 5.4923 2.5128 13 6 4.6336 4.1140 3.1252 14 1 4.8621 4.2510 4.1821 15 6 3.3473 3.2968 3.0779 16 7 5.7753 3.3269 2.5504 17 6 6.4584 2.2764 3.1026 18 1 7.2706 1.8155 2.5602 19 6 6.1070 1.8040 4.3597 20 7 5.1175 2.3662 5.0210 21 14 7.0385 0.3706 5.1128 22 1 8.4723 0.7308 5.2528 23 1 6.4734 0.0613 6.4507 24 1 6.9106 -0.8194 4.2338 25 6 2.1389 -1.1672 0.0005 26 8 3.3517 -1.1672 0.0001 27 6 1.3854 -2.4723 0.0005 28 6 1.4578 -3.3298 1.2656 29 6 2.2076 -3.7627 0.0032 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6084 2.0284 -0.5140 34 1 3.1499 1.1383 -0.5138 35 1 2.9625 3.4759 -0.3082 36 1 3.4779 4.7224 0.8423 37 1 5.1717 2.3104 0.1800 38 1 5.2432 3.8135 -0.7545 39 1 6.5197 6.0432 1.6605 40 1 5.2094 5.8480 0.4549 41 1 4.8602 6.2438 3.2558 42 1 3.6025 5.6981 2.1073 43 1 2.5104 3.9075 3.4165 44 1 3.4473 2.4233 3.7221 45 1 4.8722 2.0363 5.8996 46 1 0.4480 -2.4740 -0.5556 47 1 2.0508 -2.9501 2.0977 48 1 0.5682 -3.8959 1.5415 49 1 1.8108 -4.6134 -0.5509 50 1 3.2934 -3.6676 0.0044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278310346.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:54 Heat of formation + Delta-G solvation = -7.863268 kcal Electronic energy + Delta-G solvation = -31738.991834 eV Core-core repulsion = 27768.030218 eV Total energy + Delta-G solvation = -3970.961616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68770 -40.94951 -39.47349 -37.21261 -36.46815 -35.87498 -34.77097 -33.25280 -31.27601 -30.45206 -28.45030 -27.60286 -27.40985 -25.76627 -24.69857 -23.45284 -23.31673 -21.30462 -21.05538 -20.19145 -19.58144 -18.82858 -18.55682 -18.06508 -17.40310 -16.83509 -16.76972 -16.30694 -16.15407 -15.89531 -15.76547 -15.37064 -14.96923 -14.64662 -14.54943 -14.15559 -13.91960 -13.75072 -13.61529 -13.51966 -13.29279 -13.12067 -13.01317 -12.91221 -12.73473 -12.66122 -12.53287 -12.51484 -12.36226 -12.07927 -11.59771 -11.58122 -11.49381 -11.42046 -11.31604 -11.09500 -10.97748 -10.77203 -10.57106 -9.67192 -9.36599 -8.82199 -7.82176 -5.15151 1.31969 1.33904 1.38065 1.40683 1.73341 1.84656 2.38153 2.45804 2.87953 3.31288 3.48037 3.55118 3.72598 3.79759 3.90604 3.94227 4.02348 4.09132 4.11046 4.21750 4.26058 4.27922 4.32846 4.46081 4.57517 4.65928 4.71624 4.72123 4.78603 4.82086 4.87425 4.90449 4.91299 4.96143 5.11421 5.14028 5.15645 5.26057 5.31083 5.34907 5.38309 5.47950 5.58093 5.71485 5.86218 5.97677 6.27716 6.28601 6.73494 7.07762 7.09242 7.37810 7.75722 8.51139 9.22698 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.004970 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.626325 B = 5631.953917 C = 7096.822327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.598 5.598 3 C 0.106 3.894 4 C 0.480 3.520 5 O -0.596 6.596 6 N -0.590 5.590 7 C 0.099 3.901 8 C -0.145 4.145 9 C 0.133 3.867 10 H 0.052 0.948 11 C -0.113 4.113 12 C -0.115 4.115 13 C 0.150 3.850 14 H 0.048 0.952 15 C 0.132 3.868 16 N -0.604 5.604 17 C -0.211 4.211 18 H 0.068 0.932 19 C -0.061 4.061 20 N -0.931 5.931 21 Si 0.956 3.044 22 H -0.270 1.270 23 H -0.293 1.293 24 H -0.302 1.302 25 C 0.528 3.472 26 O -0.594 6.594 27 C -0.188 4.188 28 C -0.153 4.153 29 C -0.146 4.146 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.153 0.847 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.016 0.984 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.042 0.958 44 H 0.066 0.934 45 H 0.241 0.759 46 H 0.169 0.831 47 H 0.057 0.943 48 H 0.142 0.858 49 H 0.143 0.857 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.290 1.729 -16.677 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.329 5.329 3 C -0.020 4.020 4 C 0.267 3.733 5 O -0.478 6.478 6 N -0.322 5.322 7 C -0.023 4.023 8 C -0.185 4.185 9 C 0.027 3.973 10 H 0.070 0.930 11 C -0.152 4.152 12 C -0.153 4.153 13 C 0.044 3.956 14 H 0.066 0.934 15 C 0.009 3.991 16 N -0.328 5.328 17 C -0.340 4.340 18 H 0.086 0.914 19 C -0.255 4.255 20 N -0.581 5.581 21 Si 0.787 3.213 22 H -0.196 1.196 23 H -0.220 1.220 24 H -0.229 1.229 25 C 0.318 3.682 26 O -0.474 6.474 27 C -0.208 4.208 28 C -0.191 4.191 29 C -0.183 4.183 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.171 0.829 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.035 0.965 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.050 0.950 46 H 0.186 0.814 47 H 0.076 0.924 48 H 0.160 0.840 49 H 0.161 0.839 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.817 1.263 -15.979 20.523 hybrid contribution 1.055 -1.108 1.447 2.106 sum -11.762 0.154 -14.532 18.697 Atomic orbital electron populations 1.22092 0.76105 1.04299 1.03846 1.47520 1.08879 1.04177 1.72317 1.21426 1.00290 0.87654 0.92660 1.21812 0.78151 0.80563 0.92750 1.90617 1.54302 1.54704 1.48158 1.48524 1.53594 1.21747 1.08329 1.21384 0.94554 0.97220 0.89150 1.21976 0.96503 0.99623 1.00407 1.21464 0.96467 0.93149 0.86226 0.93025 1.22614 0.98556 0.94870 0.99149 1.21864 1.00364 0.94586 0.98469 1.20892 0.86238 0.89406 0.99091 0.93385 1.22709 0.95817 0.99555 0.80990 1.45555 1.35970 1.35382 1.15856 1.19045 1.10192 1.06320 0.98448 0.91400 1.25249 1.00023 1.01840 0.98347 1.69917 1.30996 1.43871 1.13348 0.85469 0.78831 0.79854 0.77139 1.19613 1.21956 1.22947 1.20589 0.87039 0.86336 0.74190 1.90701 1.16723 1.88074 1.51923 1.22306 1.03590 0.88466 1.06455 1.22975 1.04108 1.01521 0.90479 1.23035 0.98476 0.96222 1.00567 0.88465 0.89974 0.91045 0.82931 0.88663 0.88097 0.87750 0.96520 0.87842 0.92014 0.87316 0.91580 0.89120 0.93973 0.91625 0.94966 0.81405 0.92430 0.83960 0.83888 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.40 10.01 127.77 1.28 2.68 16 2 N -0.60 -17.55 2.36 -851.12 -2.01 -19.56 16 3 C 0.11 3.25 4.37 85.63 0.37 3.62 16 4 C 0.48 20.32 7.76 87.66 0.68 21.00 16 5 O -0.60 -31.55 16.09 -3.04 -0.05 -31.60 16 6 N -0.59 -23.68 2.86 -821.21 -2.35 -26.03 16 7 C 0.10 2.84 4.98 86.21 0.43 3.27 16 8 C -0.14 -4.65 5.01 29.56 0.15 -4.51 16 9 C 0.13 5.04 4.02 44.61 0.18 5.22 16 10 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 11 C -0.11 -3.21 6.02 31.60 0.19 -3.02 16 12 C -0.11 -3.70 5.78 30.32 0.18 -3.53 16 13 C 0.15 6.87 2.00 43.42 0.09 6.96 16 14 H 0.05 2.66 6.21 -2.39 -0.01 2.65 16 15 C 0.13 6.33 5.76 85.55 0.49 6.82 16 16 N -0.60 -30.54 2.77 -644.79 -1.79 -32.33 16 17 C -0.21 -12.46 10.43 84.03 0.88 -11.59 16 18 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.06 -3.74 5.50 84.86 0.47 -3.28 16 20 N -0.93 -57.95 8.33 21.65 0.18 -57.77 16 21 Si 0.96 51.13 29.55 68.60 2.03 53.16 16 22 H -0.27 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.29 -15.67 7.11 99.48 0.71 -14.96 16 24 H -0.30 -16.72 7.11 99.48 0.71 -16.01 16 25 C 0.53 18.45 7.46 87.66 0.65 19.10 16 26 O -0.59 -27.58 15.84 -3.03 -0.05 -27.63 16 27 C -0.19 -4.52 4.79 -11.54 -0.06 -4.57 16 28 C -0.15 -3.78 10.24 30.62 0.31 -3.47 16 29 C -0.15 -3.39 10.05 30.62 0.31 -3.09 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.36 6.64 -2.39 -0.02 1.35 16 32 H 0.07 1.31 8.07 -2.39 -0.02 1.29 16 33 H 0.15 2.90 7.33 -2.38 -0.02 2.88 16 34 H 0.10 3.22 7.39 -2.39 -0.02 3.21 16 35 H 0.10 2.01 6.20 -2.39 -0.01 2.00 16 36 H 0.10 2.54 3.93 -2.39 -0.01 2.53 16 37 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.11 2.11 7.38 -2.39 -0.02 2.09 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.09 2.37 6.15 -2.39 -0.01 2.36 16 43 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 44 H 0.07 4.00 5.39 -2.39 -0.01 3.99 16 45 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 46 H 0.17 2.42 7.27 -2.39 -0.02 2.40 16 47 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 49 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.07 2.22 7.67 -2.39 -0.02 2.20 16 Total: -1.00 -92.47 380.47 3.50 -88.96 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.94 Total: 21.18 kcal Atomic # 6 Polarization: 25.04 SS G_CDS: 6.60 Total: 31.63 kcal Atomic # 7 Polarization: -129.73 SS G_CDS: -5.97 Total: -135.70 kcal Atomic # 8 Polarization: -59.13 SS G_CDS: -0.10 Total: -59.23 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.03 Total: 53.16 kcal Total: -92.47 3.50 -88.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278310346.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.097 kcal (2) G-P(sol) polarization free energy of solvation -92.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds