Wall clock time and date at job start Tue Mar 31 2020 18:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99952 * 2 1 4 4 C 1.50706 * 109.47312 * 269.99594 * 3 2 1 5 5 O 1.21277 * 119.99479 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00336 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99865 * 180.02562 * 6 4 3 8 8 H 1.08992 * 109.32659 * 35.35687 * 7 6 4 9 9 C 1.53029 * 109.32311 * 154.99927 * 7 6 4 10 10 C 1.53969 * 108.82241 * 175.67560 * 9 7 6 11 11 H 1.09005 * 112.99195 * 169.00368 * 10 9 7 12 12 C 1.55422 * 106.41990 * 293.81644 * 10 9 7 13 13 C 1.55170 * 100.35186 * 73.37893 * 12 10 9 14 14 H 1.08998 * 112.48701 * 162.67311 * 13 12 10 15 15 C 1.52985 * 109.32373 * 275.88774 * 7 6 4 16 16 N 1.47789 * 104.25536 * 40.55634 * 13 12 10 17 17 C 1.36933 * 125.86055 * 153.55435 * 16 13 12 18 18 H 1.07995 * 120.00044 * 353.89317 * 17 16 13 19 19 C 1.38815 * 120.00216 * 173.90047 * 17 16 13 20 20 N 1.31623 * 119.99842 * 6.78349 * 19 17 16 21 21 Si 1.86802 * 120.00204 * 186.78167 * 19 17 16 22 22 H 1.48496 * 109.47118 * 94.98033 * 21 19 17 23 23 H 1.48501 * 109.47025 * 214.98613 * 21 19 17 24 24 H 1.48504 * 109.46859 * 334.98184 * 21 19 17 25 25 C 1.47085 * 108.28417 * 333.52685 * 16 13 12 26 26 C 1.34776 * 120.00031 * 179.97438 * 2 1 3 27 27 O 1.21280 * 120.00046 * 180.02562 * 26 2 1 28 28 C 1.50693 * 119.99843 * 0.02562 * 26 2 1 29 29 C 1.52997 * 117.51832 * 111.28421 * 28 26 2 30 30 C 1.53000 * 117.50071 * 179.91535 * 28 26 2 31 31 H 1.08996 * 109.47057 * 270.00704 * 1 2 3 32 32 H 1.09000 * 109.46851 * 30.00169 * 1 2 3 33 33 H 1.08995 * 109.46760 * 150.00151 * 1 2 3 34 34 H 1.09002 * 109.47562 * 29.99687 * 3 2 1 35 35 H 1.09001 * 109.47020 * 149.99702 * 3 2 1 36 36 H 0.97001 * 119.99524 * 0.02562 * 6 4 3 37 37 H 1.08999 * 109.58388 * 295.48247 * 9 7 6 38 38 H 1.09000 * 109.57634 * 55.74463 * 9 7 6 39 39 H 1.08995 * 111.23756 * 191.15699 * 12 10 9 40 40 H 1.09000 * 111.23648 * 315.56320 * 12 10 9 41 41 H 1.09005 * 109.53113 * 304.52801 * 15 7 6 42 42 H 1.08997 * 109.53649 * 64.75730 * 15 7 6 43 43 H 0.97002 * 119.99996 * 180.02562 * 20 19 17 44 44 H 1.08994 * 109.97808 * 241.74874 * 25 16 13 45 45 H 1.09004 * 109.97714 * 120.46367 * 25 16 13 46 46 H 1.09005 * 115.55465 * 325.58704 * 28 26 2 47 47 H 1.09003 * 117.50366 * 214.97215 * 29 28 26 48 48 H 1.09003 * 117.50147 * 359.97438 * 29 28 26 49 49 H 1.09000 * 117.49775 * 359.97326 * 30 28 26 50 50 H 1.08998 * 117.50368 * 144.99897 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 8 2.0544 1.0214 -2.3426 6 7 3.1118 2.8510 -1.6672 7 6 3.3555 3.2741 -3.0484 8 1 2.5044 2.9915 -3.6677 9 6 3.5291 4.7940 -3.0893 10 6 3.8919 5.2141 -4.5254 11 1 3.8453 6.2923 -4.6783 12 6 5.2961 4.6149 -4.8169 13 6 4.9306 3.1160 -4.9832 14 1 5.7141 2.5492 -5.4861 15 6 4.6131 2.5808 -3.5758 16 7 3.6662 3.1324 -5.7481 17 6 3.2100 2.1328 -6.5653 18 1 3.8350 1.2767 -6.7718 19 6 1.9441 2.2199 -7.1283 20 7 1.2354 3.3200 -6.9871 21 14 1.2466 0.7760 -8.0864 22 1 0.4032 -0.0529 -7.1883 23 1 0.4217 1.2817 -9.2130 24 1 2.3606 -0.0485 -8.6198 25 6 2.9816 4.4064 -5.4807 26 6 2.1389 -1.1672 0.0005 27 8 3.3517 -1.1672 0.0010 28 6 1.3854 -2.4722 0.0005 29 6 1.4590 -3.3310 -1.2636 30 6 2.2075 -3.7626 -0.0009 31 1 -0.3633 0.0001 1.0276 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 1.6085 2.0284 0.5138 35 1 3.1499 1.1384 0.5139 36 1 3.4275 3.3965 -0.9298 37 1 2.5979 5.2762 -2.7919 38 1 4.3269 5.0889 -2.4077 39 1 5.7165 5.0230 -5.7359 40 1 5.9723 4.7660 -3.9754 41 1 5.4504 2.7886 -2.9094 42 1 4.4431 1.5053 -3.6247 43 1 0.3507 3.3808 -7.3802 44 1 2.0179 4.2191 -5.0071 45 1 2.8389 4.9552 -6.4116 46 1 0.4475 -2.4736 0.5559 47 1 0.5696 -3.8973 -1.5399 48 1 2.0522 -2.9519 -2.0958 49 1 3.2933 -3.6676 -0.0022 50 1 1.8105 -4.6129 0.5536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278954209.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:56 Heat of formation + Delta-G solvation = -3.363043 kcal Electronic energy + Delta-G solvation = -30764.596664 eV Core-core repulsion = 26793.830192 eV Total energy + Delta-G solvation = -3970.766472 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.44467 -39.78579 -38.45433 -36.30730 -35.41233 -34.39396 -32.77487 -30.64767 -30.22137 -28.89052 -27.86098 -26.65333 -25.26487 -23.87131 -23.07874 -22.52621 -21.64483 -20.15250 -19.41365 -19.10182 -18.53761 -17.61026 -17.11292 -16.86504 -16.40245 -15.58840 -15.31329 -14.94216 -14.48299 -14.37055 -14.27050 -14.14236 -13.56823 -13.34707 -13.03038 -12.80502 -12.70587 -12.68217 -12.41005 -12.16150 -11.84038 -11.75222 -11.64692 -11.62997 -11.49542 -11.21355 -10.71878 -10.70444 -10.63093 -10.62265 -10.47499 -9.93573 -9.90191 -9.87891 -9.68738 -9.65740 -9.53632 -9.28894 -8.64802 -8.51046 -8.46823 -6.72760 -5.61947 -2.92505 2.40888 2.75353 3.00520 3.49196 3.55167 3.55542 3.61647 3.78144 4.36849 4.60571 4.66345 4.77171 4.89641 4.96688 5.02819 5.04461 5.23474 5.27720 5.28218 5.37847 5.49020 5.50150 5.59415 5.61509 5.62743 5.68308 5.87063 5.93323 5.94664 6.02731 6.09142 6.12135 6.15039 6.19007 6.25233 6.28337 6.60881 6.68034 6.74033 6.94112 6.95014 7.06716 7.14816 7.22851 7.63226 7.68570 7.88063 7.92024 8.12266 8.34853 8.65172 9.32463 9.92969 10.59558 11.50599 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010550 B = 0.004094 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.486230 B = 6837.315950 C = 8372.273618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.596 5.596 3 C 0.097 3.903 4 C 0.488 3.512 5 O -0.513 6.513 6 N -0.728 5.728 7 C 0.148 3.852 8 H 0.114 0.886 9 C -0.111 4.111 10 C -0.119 4.119 11 H 0.081 0.919 12 C -0.129 4.129 13 C 0.157 3.843 14 H 0.064 0.936 15 C -0.134 4.134 16 N -0.595 5.595 17 C -0.219 4.219 18 H 0.075 0.925 19 C -0.005 4.005 20 N -0.922 5.922 21 Si 0.906 3.094 22 H -0.289 1.289 23 H -0.293 1.293 24 H -0.282 1.282 25 C 0.181 3.819 26 C 0.551 3.449 27 O -0.538 6.538 28 C -0.193 4.193 29 C -0.148 4.148 30 C -0.150 4.150 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.389 0.611 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.042 0.958 42 H 0.058 0.942 43 H 0.250 0.750 44 H 0.049 0.951 45 H 0.040 0.960 46 H 0.123 0.877 47 H 0.104 0.896 48 H 0.103 0.897 49 H 0.107 0.893 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 -2.524 18.468 18.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.328 5.328 3 C -0.030 4.030 4 C 0.271 3.729 5 O -0.387 6.387 6 N -0.380 5.380 7 C 0.045 3.955 8 H 0.132 0.868 9 C -0.149 4.149 10 C -0.138 4.138 11 H 0.100 0.900 12 C -0.167 4.167 13 C 0.048 3.952 14 H 0.082 0.918 15 C -0.175 4.175 16 N -0.320 5.320 17 C -0.348 4.348 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.570 5.570 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.220 1.220 24 H -0.207 1.207 25 C 0.056 3.944 26 C 0.340 3.660 27 O -0.414 6.414 28 C -0.214 4.214 29 C -0.186 4.186 30 C -0.187 4.187 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.222 0.778 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.141 0.859 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.125 0.875 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.011 -3.092 17.635 17.904 hybrid contribution -0.492 -0.326 -0.088 0.597 sum -0.480 -3.419 17.547 17.883 Atomic orbital electron populations 1.21811 0.78714 1.04235 1.01228 1.47235 1.07194 1.04763 1.73654 1.21321 0.99829 0.86589 0.95296 1.21025 0.78662 0.81583 0.91645 1.90804 1.49630 1.52608 1.45613 1.46198 1.58306 1.23933 1.09529 1.21164 1.00826 0.92891 0.80621 0.86836 1.21950 1.00482 0.94831 0.97605 1.22837 0.96964 0.99042 0.94988 0.90036 1.22997 0.96086 0.97460 1.00196 1.21519 0.90027 0.93406 0.90222 0.91797 1.22570 0.95884 1.00767 0.98276 1.44606 1.18871 1.16708 1.51787 1.19015 0.97820 0.97799 1.20143 0.90674 1.24722 0.96833 0.97388 1.01114 1.69957 1.12056 1.25177 1.49798 0.86179 0.79017 0.82171 0.78943 1.21684 1.21959 1.20748 1.21289 0.92761 0.85134 0.95179 1.19663 0.87233 0.84328 0.74805 1.90683 1.13944 1.87173 1.49646 1.22144 1.02461 0.90565 1.06275 1.22967 1.03211 1.00830 0.91574 1.22952 1.00058 0.95023 1.00659 0.92507 0.90756 0.90514 0.87794 0.87258 0.77805 0.92254 0.92831 0.91918 0.92229 0.93924 0.92327 0.93996 0.93328 0.94176 0.85898 0.87727 0.87833 0.87498 0.88014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.01 59.85 0.60 1.40 16 2 N -0.60 -7.77 2.36 -182.96 -0.43 -8.20 16 3 C 0.10 1.19 5.89 -5.19 -0.03 1.16 16 4 C 0.49 8.33 7.85 -10.98 -0.09 8.24 16 5 O -0.51 -11.68 16.09 5.56 0.09 -11.59 16 6 N -0.73 -11.16 5.07 -53.80 -0.27 -11.43 16 7 C 0.15 2.80 2.07 -67.92 -0.14 2.66 16 8 H 0.11 2.82 5.39 -51.93 -0.28 2.54 16 9 C -0.11 -1.77 4.95 -26.21 -0.13 -1.90 16 10 C -0.12 -2.15 4.33 -87.93 -0.38 -2.53 16 11 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 12 C -0.13 -2.27 6.18 -24.30 -0.15 -2.42 16 13 C 0.16 3.31 4.30 -65.61 -0.28 3.03 16 14 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.13 -2.66 5.27 -26.28 -0.14 -2.80 16 16 N -0.60 -15.29 2.43 -161.37 -0.39 -15.69 16 17 C -0.22 -6.35 10.28 -15.06 -0.15 -6.50 16 18 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 19 C 0.00 -0.14 5.48 -17.43 -0.10 -0.23 16 20 N -0.92 -27.71 10.40 55.49 0.58 -27.13 16 21 Si 0.91 23.42 29.56 -169.99 -5.02 18.39 16 22 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 23 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 24 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 25 C 0.18 4.36 4.10 -2.82 -0.01 4.35 16 26 C 0.55 8.17 7.46 -10.99 -0.08 8.09 16 27 O -0.54 -9.87 15.84 5.56 0.09 -9.79 16 28 C -0.19 -2.18 4.79 -91.78 -0.44 -2.62 16 29 C -0.15 -1.68 10.24 -26.73 -0.27 -1.96 16 30 C -0.15 -1.55 10.04 -26.73 -0.27 -1.82 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 33 H 0.08 0.72 6.64 -51.93 -0.34 0.37 16 34 H 0.10 0.87 8.07 -51.93 -0.42 0.45 16 35 H 0.11 1.31 7.42 -51.93 -0.39 0.92 16 36 H 0.39 4.34 8.60 -40.82 -0.35 3.99 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.71 7.98 -51.93 -0.41 0.30 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 41 H 0.04 0.74 8.00 -51.93 -0.42 0.32 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.05 1.31 6.02 -51.93 -0.31 1.00 16 45 H 0.04 1.08 7.56 -51.93 -0.39 0.69 16 46 H 0.12 1.02 7.27 -51.93 -0.38 0.64 16 47 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 49 H 0.11 1.29 7.67 -51.93 -0.40 0.89 16 50 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 392.18 15.07 5.91 5.91 Total: -1.00 -37.17 392.18 -9.79 -46.95 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -8.26 Total: 6.42 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -2.07 Total: 6.15 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.52 Total: -62.45 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.18 Total: -21.38 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.39 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.17 -9.79 -46.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278954209.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.591 kcal (2) G-P(sol) polarization free energy of solvation -37.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds