Wall clock time and date at job start Tue Mar 31 2020 18:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99952 * 2 1 4 4 C 1.50706 * 109.47312 * 269.99594 * 3 2 1 5 5 O 1.21277 * 119.99479 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00336 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99865 * 180.02562 * 6 4 3 8 8 H 1.08992 * 109.32659 * 35.35687 * 7 6 4 9 9 C 1.53029 * 109.32311 * 154.99927 * 7 6 4 10 10 C 1.53969 * 108.82241 * 175.67560 * 9 7 6 11 11 H 1.09005 * 112.99195 * 169.00368 * 10 9 7 12 12 C 1.55422 * 106.41990 * 293.81644 * 10 9 7 13 13 C 1.55170 * 100.35186 * 73.37893 * 12 10 9 14 14 H 1.08998 * 112.48701 * 162.67311 * 13 12 10 15 15 C 1.52985 * 109.32373 * 275.88774 * 7 6 4 16 16 N 1.47789 * 104.25536 * 40.55634 * 13 12 10 17 17 C 1.36933 * 125.86055 * 153.55435 * 16 13 12 18 18 H 1.07995 * 120.00044 * 353.89317 * 17 16 13 19 19 C 1.38815 * 120.00216 * 173.90047 * 17 16 13 20 20 N 1.31623 * 119.99842 * 6.78349 * 19 17 16 21 21 Si 1.86802 * 120.00204 * 186.78167 * 19 17 16 22 22 H 1.48496 * 109.47118 * 94.98033 * 21 19 17 23 23 H 1.48501 * 109.47025 * 214.98613 * 21 19 17 24 24 H 1.48504 * 109.46859 * 334.98184 * 21 19 17 25 25 C 1.47085 * 108.28417 * 333.52685 * 16 13 12 26 26 C 1.34776 * 120.00031 * 179.97438 * 2 1 3 27 27 O 1.21280 * 120.00046 * 180.02562 * 26 2 1 28 28 C 1.50693 * 119.99843 * 0.02562 * 26 2 1 29 29 C 1.52997 * 117.51832 * 111.28421 * 28 26 2 30 30 C 1.53000 * 117.50071 * 179.91535 * 28 26 2 31 31 H 1.08996 * 109.47057 * 270.00704 * 1 2 3 32 32 H 1.09000 * 109.46851 * 30.00169 * 1 2 3 33 33 H 1.08995 * 109.46760 * 150.00151 * 1 2 3 34 34 H 1.09002 * 109.47562 * 29.99687 * 3 2 1 35 35 H 1.09001 * 109.47020 * 149.99702 * 3 2 1 36 36 H 0.97001 * 119.99524 * 0.02562 * 6 4 3 37 37 H 1.08999 * 109.58388 * 295.48247 * 9 7 6 38 38 H 1.09000 * 109.57634 * 55.74463 * 9 7 6 39 39 H 1.08995 * 111.23756 * 191.15699 * 12 10 9 40 40 H 1.09000 * 111.23648 * 315.56320 * 12 10 9 41 41 H 1.09005 * 109.53113 * 304.52801 * 15 7 6 42 42 H 1.08997 * 109.53649 * 64.75730 * 15 7 6 43 43 H 0.97002 * 119.99996 * 180.02562 * 20 19 17 44 44 H 1.08994 * 109.97808 * 241.74874 * 25 16 13 45 45 H 1.09004 * 109.97714 * 120.46367 * 25 16 13 46 46 H 1.09005 * 115.55465 * 325.58704 * 28 26 2 47 47 H 1.09003 * 117.50366 * 214.97215 * 29 28 26 48 48 H 1.09003 * 117.50147 * 359.97438 * 29 28 26 49 49 H 1.09000 * 117.49775 * 359.97326 * 30 28 26 50 50 H 1.08998 * 117.50368 * 144.99897 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 8 2.0544 1.0214 -2.3426 6 7 3.1118 2.8510 -1.6672 7 6 3.3555 3.2741 -3.0484 8 1 2.5044 2.9915 -3.6677 9 6 3.5291 4.7940 -3.0893 10 6 3.8919 5.2141 -4.5254 11 1 3.8453 6.2923 -4.6783 12 6 5.2961 4.6149 -4.8169 13 6 4.9306 3.1160 -4.9832 14 1 5.7141 2.5492 -5.4861 15 6 4.6131 2.5808 -3.5758 16 7 3.6662 3.1324 -5.7481 17 6 3.2100 2.1328 -6.5653 18 1 3.8350 1.2767 -6.7718 19 6 1.9441 2.2199 -7.1283 20 7 1.2354 3.3200 -6.9871 21 14 1.2466 0.7760 -8.0864 22 1 0.4032 -0.0529 -7.1883 23 1 0.4217 1.2817 -9.2130 24 1 2.3606 -0.0485 -8.6198 25 6 2.9816 4.4064 -5.4807 26 6 2.1389 -1.1672 0.0005 27 8 3.3517 -1.1672 0.0010 28 6 1.3854 -2.4722 0.0005 29 6 1.4590 -3.3310 -1.2636 30 6 2.2075 -3.7626 -0.0009 31 1 -0.3633 0.0001 1.0276 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 1.6085 2.0284 0.5138 35 1 3.1499 1.1384 0.5139 36 1 3.4275 3.3965 -0.9298 37 1 2.5979 5.2762 -2.7919 38 1 4.3269 5.0889 -2.4077 39 1 5.7165 5.0230 -5.7359 40 1 5.9723 4.7660 -3.9754 41 1 5.4504 2.7886 -2.9094 42 1 4.4431 1.5053 -3.6247 43 1 0.3507 3.3808 -7.3802 44 1 2.0179 4.2191 -5.0071 45 1 2.8389 4.9552 -6.4116 46 1 0.4475 -2.4736 0.5559 47 1 0.5696 -3.8973 -1.5399 48 1 2.0522 -2.9519 -2.0958 49 1 3.2933 -3.6676 -0.0022 50 1 1.8105 -4.6129 0.5536 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278954209.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:55 Heat of formation + Delta-G solvation = -29.713743 kcal Electronic energy + Delta-G solvation = -30765.739316 eV Core-core repulsion = 26793.830192 eV Total energy + Delta-G solvation = -3971.909124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.72274 -41.16421 -39.89091 -37.26510 -36.54549 -36.01312 -34.71962 -32.40400 -31.70868 -30.51052 -29.16143 -27.59051 -27.22775 -24.99575 -24.87509 -23.40408 -23.00076 -21.58819 -21.21718 -20.33714 -19.89020 -18.97858 -18.58864 -18.28922 -17.68362 -16.98447 -16.66340 -16.36186 -16.25689 -15.72577 -15.59020 -15.35306 -15.22148 -14.77771 -14.38366 -14.17334 -13.88062 -13.80178 -13.62262 -13.50234 -13.48737 -13.30089 -13.24756 -13.07234 -12.87440 -12.67094 -12.55698 -12.51082 -12.17583 -11.91590 -11.65785 -11.58648 -11.50464 -11.44092 -11.18037 -11.09203 -11.01536 -10.89484 -10.69905 -9.97496 -9.75088 -8.84375 -7.87629 -5.17628 1.30560 1.33975 1.39213 1.45069 1.67502 1.80420 2.38070 2.45466 2.87958 3.30974 3.46126 3.63059 3.77272 3.79725 3.80983 3.90504 3.95327 4.06692 4.11186 4.18277 4.22213 4.32093 4.36850 4.42565 4.50876 4.58826 4.65379 4.66704 4.67963 4.78592 4.81343 4.81590 4.88763 4.95566 5.07984 5.15205 5.17450 5.28738 5.31019 5.31857 5.42634 5.45540 5.47996 5.65705 5.75242 5.82385 6.21042 6.22374 6.64492 7.03873 7.12074 7.39551 7.79857 8.44398 9.22846 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010550 B = 0.004094 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.486230 B = 6837.315950 C = 8372.273618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.599 5.599 3 C 0.102 3.898 4 C 0.479 3.521 5 O -0.582 6.582 6 N -0.710 5.710 7 C 0.156 3.844 8 H 0.046 0.954 9 C -0.099 4.099 10 C -0.106 4.106 11 H 0.114 0.886 12 C -0.111 4.111 13 C 0.139 3.861 14 H 0.057 0.943 15 C -0.121 4.121 16 N -0.614 5.614 17 C -0.232 4.232 18 H 0.066 0.934 19 C -0.059 4.059 20 N -0.944 5.944 21 Si 0.961 3.039 22 H -0.299 1.299 23 H -0.285 1.285 24 H -0.271 1.271 25 C 0.189 3.811 26 C 0.535 3.465 27 O -0.587 6.587 28 C -0.193 4.193 29 C -0.159 4.159 30 C -0.139 4.139 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.154 0.846 35 H 0.117 0.883 36 H 0.416 0.584 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.007 0.993 43 H 0.244 0.756 44 H 0.009 0.991 45 H -0.001 1.001 46 H 0.162 0.838 47 H 0.133 0.867 48 H 0.061 0.939 49 H 0.082 0.918 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 -1.351 21.852 21.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.330 5.330 3 C -0.024 4.024 4 C 0.265 3.735 5 O -0.461 6.461 6 N -0.363 5.363 7 C 0.051 3.949 8 H 0.064 0.936 9 C -0.136 4.136 10 C -0.126 4.126 11 H 0.132 0.868 12 C -0.149 4.149 13 C 0.032 3.968 14 H 0.075 0.925 15 C -0.162 4.162 16 N -0.339 5.339 17 C -0.362 4.362 18 H 0.084 0.916 19 C -0.252 4.252 20 N -0.593 5.593 21 Si 0.791 3.209 22 H -0.227 1.227 23 H -0.211 1.211 24 H -0.196 1.196 25 C 0.064 3.936 26 C 0.325 3.675 27 O -0.467 6.467 28 C -0.214 4.214 29 C -0.197 4.197 30 C -0.176 4.176 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.172 0.828 35 H 0.135 0.865 36 H 0.254 0.746 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.026 0.974 43 H 0.054 0.946 44 H 0.027 0.973 45 H 0.017 0.983 46 H 0.179 0.821 47 H 0.151 0.849 48 H 0.080 0.920 49 H 0.100 0.900 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.472 -1.871 21.071 21.159 hybrid contribution -0.603 -0.722 -1.159 1.493 sum -0.131 -2.594 19.912 20.081 Atomic orbital electron populations 1.22058 0.76674 1.03973 1.03759 1.47481 1.08637 1.04555 1.72308 1.21486 1.01370 0.87639 0.91913 1.22030 0.77348 0.81017 0.93097 1.90784 1.52438 1.54693 1.48174 1.45956 1.57547 1.23807 1.09024 1.20767 0.97474 0.95197 0.81474 0.93616 1.21890 1.02920 0.91802 0.97037 1.22805 0.95450 0.99803 0.94518 0.86825 1.22946 0.96339 0.93384 1.02216 1.21855 0.88053 0.96759 0.90089 0.92535 1.22406 0.97821 0.97590 0.98414 1.44828 1.20698 1.16622 1.51716 1.19267 0.98091 0.98528 1.20278 0.91623 1.25429 0.97311 0.99667 1.02820 1.70155 1.11866 1.26478 1.50814 0.85305 0.78398 0.79540 0.77706 1.22671 1.21133 1.19556 1.21053 0.92968 0.85004 0.94530 1.20392 0.87052 0.85991 0.74023 1.90643 1.16041 1.88018 1.52006 1.22318 1.03712 0.89041 1.06328 1.22954 1.04157 1.01763 0.90781 1.23023 0.98762 0.95870 0.99935 0.88334 0.91533 0.90462 0.82815 0.86493 0.74646 0.91249 0.87721 0.91834 0.87560 0.89974 0.97415 0.94643 0.97282 0.98253 0.82076 0.84871 0.91979 0.89956 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.01 127.77 1.28 2.62 16 2 N -0.60 -15.03 2.36 -851.14 -2.01 -17.04 16 3 C 0.10 2.36 5.89 85.64 0.50 2.86 16 4 C 0.48 16.51 7.85 87.66 0.69 17.20 16 5 O -0.58 -28.27 16.09 -3.02 -0.05 -28.32 16 6 N -0.71 -20.82 5.07 -442.52 -2.24 -23.06 16 7 C 0.16 5.85 2.07 45.00 0.09 5.94 16 8 H 0.05 2.40 5.39 -2.39 -0.01 2.39 16 9 C -0.10 -2.82 4.95 30.93 0.15 -2.67 16 10 C -0.11 -3.61 4.33 -9.05 -0.04 -3.64 16 11 H 0.11 3.22 8.14 -2.38 -0.02 3.20 16 12 C -0.11 -3.54 6.18 32.17 0.20 -3.34 16 13 C 0.14 5.93 4.30 45.79 0.20 6.12 16 14 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 15 C -0.12 -4.83 5.27 30.89 0.16 -4.67 16 16 N -0.61 -33.12 2.43 -664.45 -1.61 -34.74 16 17 C -0.23 -14.25 10.28 84.03 0.86 -13.39 16 18 H 0.07 4.02 7.84 -2.91 -0.02 3.99 16 19 C -0.06 -3.66 5.48 84.86 0.47 -3.19 16 20 N -0.94 -60.11 10.40 21.65 0.23 -59.88 16 21 Si 0.96 50.57 29.56 68.60 2.03 52.59 16 22 H -0.30 -16.05 7.11 99.48 0.71 -15.34 16 23 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 24 H -0.27 -13.58 7.11 99.48 0.71 -12.88 16 25 C 0.19 9.49 4.10 86.85 0.36 9.85 16 26 C 0.54 15.93 7.46 87.65 0.65 16.59 16 27 O -0.59 -22.32 15.84 -3.03 -0.05 -22.36 16 28 C -0.19 -4.16 4.79 -11.54 -0.06 -4.22 16 29 C -0.16 -3.66 10.24 30.59 0.31 -3.35 16 30 C -0.14 -2.77 10.04 30.59 0.31 -2.47 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.28 8.07 -2.39 -0.02 1.26 16 33 H 0.08 1.33 6.64 -2.39 -0.02 1.32 16 34 H 0.15 1.97 8.07 -2.39 -0.02 1.96 16 35 H 0.12 2.58 7.42 -2.39 -0.02 2.56 16 36 H 0.42 7.71 8.60 -92.71 -0.80 6.91 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.10 2.05 7.98 -2.39 -0.02 2.03 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.11 2.50 7.75 -2.39 -0.02 2.48 16 41 H 0.08 2.60 8.00 -2.38 -0.02 2.58 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.01 0.52 6.02 -2.39 -0.01 0.51 16 45 H 0.00 -0.04 7.56 -2.38 -0.02 -0.06 16 46 H 0.16 2.16 7.27 -2.38 -0.02 2.14 16 47 H 0.13 2.23 8.14 -2.39 -0.02 2.22 16 48 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 49 H 0.08 2.07 7.67 -2.39 -0.02 2.05 16 50 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -94.11 392.18 2.58 -91.54 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.15 Total: 21.03 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 6.14 Total: 20.24 kcal Atomic # 7 Polarization: -129.08 SS G_CDS: -5.64 Total: -134.72 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -0.10 Total: -50.68 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.03 Total: 52.59 kcal Total: -94.11 2.58 -91.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278954209.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.824 kcal (2) G-P(sol) polarization free energy of solvation -94.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds